mRNA_P-littoralis_Contig632.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig632.49.1
Unique NamemRNA_P-littoralis_Contig632.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig632.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig632contigP-littoralis_Contig632:162433..163419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons3
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791319.2282286-CDS-P-littoralis_Contig632:162434..1625761680791319.2282286-CDS-P-littoralis_Contig632:162434..162576Pylaiella littoralis U1_48CDSP-littoralis_Contig632 162435..162576 -
1680791319.2391438-CDS-P-littoralis_Contig632:162735..1628341680791319.2391438-CDS-P-littoralis_Contig632:162735..162834Pylaiella littoralis U1_48CDSP-littoralis_Contig632 162736..162834 -
1680791319.248533-CDS-P-littoralis_Contig632:163336..1634191680791319.248533-CDS-P-littoralis_Contig632:163336..163419Pylaiella littoralis U1_48CDSP-littoralis_Contig632 163337..163419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig632.49.1prot_P-littoralis_Contig632.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig632 162435..163419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig632.49.1

>prot_P-littoralis_Contig632.49.1 ID=prot_P-littoralis_Contig632.49.1|Name=mRNA_P-littoralis_Contig632.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
GLLPAEEPEDGTGPTQEAAPPAICTPGSAGKKRSSTTDLTPSPPSTRRSS
SRRKQAPTVDSDQDAEARPGTKEKKPASGALDENAVVMMARSMGMQMVPA
NSSGCYPP
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mRNA from alignment at P-littoralis_Contig632:162433..163419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig632.49.1 ID=mRNA_P-littoralis_Contig632.49.1|Name=mRNA_P-littoralis_Contig632.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=987bp|location=Sequence derived from alignment at P-littoralis_Contig632:162433..163419- (Pylaiella littoralis U1_48)
GGTCTCCTTCCAGCAGAGGAACCTGAGGATGGGACTGGACCCACCCAGGA
GGCGGCCCCGCCCGCTATCTGTACCCCGGGTAGGTGGGCAAATACCTCAT
GCTTGTACTGCTGTACGAATTACGACATTGTCTCGTTGTTCAACTGCTGT
TTGCGCAATTTTATTTTTTGTAAAGATGACGAAGAACGGTTTGGTAGTTT
TTTTTAATTTTCTTAGAAGTGCCACTTTTATTTAACGACAGCAACACAAG
TTCCCGCAGAGTTGAAGCTGACCTCCAGGCCGAGGTAGCAGTGTTGTTCG
CTCACATGTGTGTACGTGGCGCTTTTCGTTTTCAGTGGGAGGCTTGTGTT
GTTGACCCCGATCACTCCTCCCATCGTAAATAAATATTAATCGTAAAAAA
ATACGCAGGAGTCGCGAGGCAGAGGCCTCATACCCGTCCCCACGCCCCGG
CGTTTCGAACTGTCCCGTCATTTTCCCCTTCTGAATAAGGTTGTGTAGCA
TGACCTTGTTTATTTGAAATCATGTAGACATTACCTCGACTAACTTTTCG
TTTACCTGTGCCTGCTTGCGAAACACGTCTCTTAGTGCTGGAAAAAAGCG
CTCGTCCACCACCGATCTCACGCCATCCCCGCCGAGCACCAGGCGCAGTT
CCTCCAGGAGGAAGCAGGCGCCGACAGTGGACAGGTCAGGACCATTGCTT
TTGCTAGTATCGAAAACACTTCGATGAGGGGCATGGTGGAAGAATTTGAT
TGCAGAGGTCGTAATACCTTCATCATGATGGAGCGGCGCGCGCTGACTCT
TTTCACCCTCGTGACGTTCATCTCTTTGTTTCAATTTTTGTAGCGATCAA
GACGCGGAGGCGAGGCCAGGGACTAAGGAGAAGAAGCCTGCCTCAGGAGC
GCTCGATGAGAACGCGGTCGTGATGATGGCGAGATCGATGGGCATGCAGA
TGGTTCCGGCCAACAGCAGCGGCTGTTACCCGCCTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig632:162433..163419-

>mRNA_P-littoralis_Contig632.49.1 ID=mRNA_P-littoralis_Contig632.49.1|Name=mRNA_P-littoralis_Contig632.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig632:162433..163419- (Pylaiella littoralis U1_48)
GGTCTCCTTCCAGCAGAGGAACCTGAGGATGGGACTGGACCCACCCAGGA
GGCGGCCCCGCCCGCTATCTGTACCCCGGGTAGTGCTGGAAAAAAGCGCT
CGTCCACCACCGATCTCACGCCATCCCCGCCGAGCACCAGGCGCAGTTCC
TCCAGGAGGAAGCAGGCGCCGACAGTGGACAGCGATCAAGACGCGGAGGC
GAGGCCAGGGACTAAGGAGAAGAAGCCTGCCTCAGGAGCGCTCGATGAGA
ACGCGGTCGTGATGATGGCGAGATCGATGGGCATGCAGATGGTTCCGGCC
AACAGCAGCGGCTGTTACCCGCCT
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