mRNA_P-littoralis_Contig632.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig632.47.1
Unique NamemRNA_P-littoralis_Contig632.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig632.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig632contigP-littoralis_Contig632:161668..161982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size293
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791319.1595528-CDS-P-littoralis_Contig632:161667..1618341680791319.1595528-CDS-P-littoralis_Contig632:161667..161834Pylaiella littoralis U1_48CDSP-littoralis_Contig632 161668..161834 -
1680791319.1745849-CDS-P-littoralis_Contig632:161856..1619711680791319.1745849-CDS-P-littoralis_Contig632:161856..161971Pylaiella littoralis U1_48CDSP-littoralis_Contig632 161857..161971 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791319.1851845-UTR-P-littoralis_Contig632:161971..1619821680791319.1851845-UTR-P-littoralis_Contig632:161971..161982Pylaiella littoralis U1_48UTRP-littoralis_Contig632 161972..161982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig632.47.1prot_P-littoralis_Contig632.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig632 161668..161971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig632.47.1

>prot_P-littoralis_Contig632.47.1 ID=prot_P-littoralis_Contig632.47.1|Name=mRNA_P-littoralis_Contig632.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
MNCGRFTLASTECSVSHFCIVDECLHRILTQMLLMLICGDRGREGVLATT
VVVVYSLFNRHSSPFDLEVAESTVHDDEGFVRTHQPVDCPSFYI
back to top

mRNA from alignment at P-littoralis_Contig632:161668..161982-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig632.47.1 ID=mRNA_P-littoralis_Contig632.47.1|Name=mRNA_P-littoralis_Contig632.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig632:161668..161982- (Pylaiella littoralis U1_48)
TCTCTTCGCCGATGAATTGTGGCCGCTTCACACTTGCCTCAACGGAGTGC
TCGGTGTCTCATTTTTGTATCGTTGACGAATGTTTACACCGGATTTTGAC
CCAGATGCTGTTGATGTTGATTTGCGTGTGCAGTAATAAATTTTGTCGGT
GACCGAGGCCGTGAGGGGGTCCTCGCAACCACTGTTGTTGTGGTTTATTC
TTTGTTCAACCGTCATTCGTCGCCTTTCGACCTCGAGGTGGCTGAGAGTA
CAGTTCATGACGACGAAGGGTTTGTACGTACTCACCAACCTGTCGATTGT
CCCTCATTTTATATA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig632:161668..161982-

>mRNA_P-littoralis_Contig632.47.1 ID=mRNA_P-littoralis_Contig632.47.1|Name=mRNA_P-littoralis_Contig632.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig632:161668..161982- (Pylaiella littoralis U1_48)
ATGAATTGTGGCCGCTTCACACTTGCCTCAACGGAGTGCTCGGTGTCTCA
TTTTTGTATCGTTGACGAATGTTTACACCGGATTTTGACCCAGATGCTGT
TGATGTTGATTTGCGGTGACCGAGGCCGTGAGGGGGTCCTCGCAACCACT
GTTGTTGTGGTTTATTCTTTGTTCAACCGTCATTCGTCGCCTTTCGACCT
CGAGGTGGCTGAGAGTACAGTTCATGACGACGAAGGGTTTGTACGTACTC
ACCAACCTGTCGATTGTCCCTCATTTTATATA
back to top