mRNA_P-littoralis_Contig1162.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1162.8.1
Unique NamemRNA_P-littoralis_Contig1162.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1162.8.1 vs. uniprot
Match: A0A6H5KW17_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW17_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 7.620e-31
Identity = 65/91 (71.43%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 FAAALEVILERFSKDDVILRDLVHLDE---EGEGRRTETPLEYVRGAVWGMLYADDAGFVSRSPEGLARMMTIIVEVFAAFSLTVSEKKTE 264
            FA  LEV++ RFS+DDV+LR LV L+E   E  G + ETPL+ VR AVWGMLYADDAG VSRS EGLARMMTIIVEVF  F LTVSEKKTE
Sbjct:   35 FAKVLEVVVIRFSEDDVVLRSLVCLEEGKTEAAGGK-ETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTE 124
[Close]
BLAST of mRNA_P-littoralis_Contig1162.8.1 vs. uniprot
Match: A0A6H5JHV5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV5_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.150e-30
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 FAAALEVILERFSKDDVILRDLVHLDEEGE---GRRTETPLEYVRGAVWGMLYADDAGFVSRSPEGLARMMTIIVEVFAAFSLTVSEKKTE 264
            FA  LEV++ RFS+DDV+LR LV L EEG+   G R ETPL+ VR AVWGMLYADDAG VSRS EGLARMMTIIVEVF  F LTVSEK TE
Sbjct:   78 FAEVLEVVVIRFSEDDVVLRSLVCL-EEGKTEAGGREETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKNTE 167
[Close]
BLAST of mRNA_P-littoralis_Contig1162.8.1 vs. uniprot
Match: A0A6H5JYZ3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ3_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.350e-29
Identity = 64/88 (72.73%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 FAAALEVILERFSKDDVILRDLVHLDEEGEGRRTETPLEYVRGAVWGMLYADDAGFVSRSPEGLARMMTIIVEVFAAFSLTVSEKKTE 264
            FAA LEVI+ RFSKD+VI+RDLV+L+EE  G RT   L+ VR AVWGMLYADDAG VS+S +GLARMMTIIVEVF  F LTVSE+KTE
Sbjct:   10 FAAPLEVIVTRFSKDEVIMRDLVYLNEEEGGGRTL--LDRVRRAVWGMLYADDAGIVSKSADGLARMMTIIVEVFREFGLTVSERKTE 95
[Close]
BLAST of mRNA_P-littoralis_Contig1162.8.1 vs. uniprot
Match: A0A6H5L3D3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3D3_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.600e-29
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    4 AAALEVILERFSKDDVILRDLVHLDEEGEGRRTETPLEYVRGAVWGMLYADDAGFVSRSPEGLARMMTIIVEVFAAFSLTVSEKKTE 264
            AA +EV+  RFS+DDVIL++LV+L+E G G RT  PL  VR AVWGMLYADDAG VSRSPEGLARMMT+IVEVF  F LTVSEK TE
Sbjct:  214 AAVIEVVAIRFSEDDVILQNLVYLEETGAGART--PLNRVRRAVWGMLYADDAGVVSRSPEGLARMMTVIVEVFGKFGLTVSEKTTE 298
[Close]
BLAST of mRNA_P-littoralis_Contig1162.8.1 vs. uniprot
Match: A0A6H5JHY6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.850e-29
Identity = 63/90 (70.00%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 FAAALEVILERFSKDDVILRDLVHLDEEGE---GRRTETPLEYVRGAVWGMLYADDAGFVSRSPEGLARMMTIIVEVFAAFSLTVSEKKT 261
            FA ALEV++ RFS+DDV+LR LV L EEG+   G   ETPL+ VR AVWGMLYADDAG +SRS EGL+RMMT+IVEVF  F LTVSEKKT
Sbjct:   98 FAEALEVVVIRFSEDDVVLRSLVCL-EEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVISRSAEGLSRMMTMIVEVFGEFGLTVSEKKT 186
[Close]
BLAST of mRNA_P-littoralis_Contig1162.8.1 vs. uniprot
Match: A0A6H5JZJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.020e-29
Identity = 66/92 (71.74%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 FAAALEVILERFSKDDVILRDLVHLDE---EGE-GRRTETPLEYVRGAVWGMLYADDAGFVSRSPEGLARMMTIIVEVFAAFSLTVSEKKTE 264
            FA  LEV++ RFS+DDV+LR LV L+E   E E G   ETPL+ VR AVWGMLYADDAG VSRS EGLARMMTIIVEVF  F LTVSEKKTE
Sbjct:   64 FAEVLEVVVIRFSEDDVVLRSLVCLEEGKTETEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTE 155
[Close]
BLAST of mRNA_P-littoralis_Contig1162.8.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.770e-29
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:    1 FAAALEVILERFSKDDVILRDLVHLDEEGEGRRTETPLEYVRGAVWGMLYADDAGFVSRSPEGLARMMTIIVEVFAAFSLTVSEKKTE 264
            FAA LEVI+ RFSKD+VI+RDLV+L EE  G RT   L+ VR AVWGMLYADDAG VS+S +GLARMMTIIVEVF  F LTVSE+KTE
Sbjct:  212 FAAPLEVIVARFSKDEVIMRDLVYLKEEEGGGRTL--LDRVRRAVWGMLYADDAGIVSKSADGLARMMTIIVEVFREFGLTVSERKTE 297
[Close]
BLAST of mRNA_P-littoralis_Contig1162.8.1 vs. uniprot
Match: A0A6H5JFG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG6_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.110e-28
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 FAAALEVILERFSKDDVILRDLVHLDEEGE---GRRTETPLEYVRGAVWGMLYADDAGFVSRSPEGLARMMTIIVEVFAAFSLTVSEKKTE 264
            FA  LEV++ RFS+DDV+LR LV L EEG+   G   ETPL+ VR AVWGMLYADDAG VSRS EGLARMMTIIVEVF  F LTVSEKKTE
Sbjct:   98 FAEVLEVVVIRFSEDDVVLRSLVCL-EEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTE 187
[Close]
BLAST of mRNA_P-littoralis_Contig1162.8.1 vs. uniprot
Match: A0A6H5JS19_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS19_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.620e-28
Identity = 63/89 (70.79%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 FAAALEVILERFSKDDVILRDLVHLDEE-GEGRRTETPLEYVRGAVWGMLYADDAGFVSRSPEGLARMMTIIVEVFAAFSLTVSEKKTE 264
            FAA ++ +  RFS+DDVIL++LV+L+EE G G RT  PL+ VR AVWGMLYADDAG VSRS EGLARMMT+IVEVF  F LTVSEKKTE
Sbjct:  166 FAAVIDAVAIRFSEDDVILQNLVYLEEETGAGART--PLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTVIVEVFEKFGLTVSEKKTE 252
[Close]
BLAST of mRNA_P-littoralis_Contig1162.8.1 vs. uniprot
Match: A0A6H5KZ04_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ04_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.580e-28
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 FAAALEVILERFSKDDVILRDLVHLDEEGE---GRRTETPLEYVRGAVWGMLYADDAGFVSRSPEGLARMMTIIVEVFAAFSLTVSEKKTE 264
            FA  LEV++ RFS+DDV+LR LV L EEG+   G R ETPL+ VR  VWGMLYADDAG VSRS EGLARM  IIVEVF  F LTVSEKKTE
Sbjct:   37 FAEVLEVVVIRFSEDDVVLRSLVCL-EEGKTEAGGRKETPLDRVRREVWGMLYADDAGVVSRSAEGLARMTAIIVEVFGEFGLTVSEKKTE 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1162.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW17_9PHAE7.620e-3171.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHV5_9PHAE1.150e-3072.53Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JYZ3_9PHAE1.350e-2972.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L3D3_9PHAE1.600e-2972.41Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHY6_9PHAE2.850e-2970.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JZJ9_9PHAE4.020e-2971.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7X5_9PHAE9.770e-2972.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JFG6_9PHAE1.110e-2872.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JS19_9PHAE1.620e-2870.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KZ04_9PHAE2.580e-2870.33Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1162contigP-littoralis_Contig1162:41100..41363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size264
Hectar predicted targeting categoryother localisation
Exons1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789483.5200863-CDS-P-littoralis_Contig1162:41099..413631680789483.5200863-CDS-P-littoralis_Contig1162:41099..41363Pylaiella littoralis U1_48CDSP-littoralis_Contig1162 41100..41363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1162.8.1prot_P-littoralis_Contig1162.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1162 41100..41363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1162.8.1

>prot_P-littoralis_Contig1162.8.1 ID=prot_P-littoralis_Contig1162.8.1|Name=mRNA_P-littoralis_Contig1162.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
FAAALEVILERFSKDDVILRDLVHLDEEGEGRRTETPLEYVRGAVWGMLY
ADDAGFVSRSPEGLARMMTIIVEVFAAFSLTVSEKKTE
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mRNA from alignment at P-littoralis_Contig1162:41100..41363-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1162.8.1 ID=mRNA_P-littoralis_Contig1162.8.1|Name=mRNA_P-littoralis_Contig1162.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig1162:41100..41363- (Pylaiella littoralis U1_48)
TTTGCAGCAGCACTCGAGGTGATACTGGAGCGTTTCAGCAAGGATGATGT
CATCCTGAGGGATTTGGTGCACTTGGACGAAGAGGGGGAGGGCAGGAGGA
CGGAAACCCCCCTAGAGTACGTTCGGGGGGCGGTATGGGGGATGTTGTAC
GCCGACGACGCAGGCTTTGTTTCGAGATCACCCGAAGGCCTAGCTAGAAT
GATGACCATCATCGTGGAGGTGTTTGCCGCCTTTAGCTTGACCGTCTCAG
AGAAGAAGACGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1162:41100..41363-

>mRNA_P-littoralis_Contig1162.8.1 ID=mRNA_P-littoralis_Contig1162.8.1|Name=mRNA_P-littoralis_Contig1162.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig1162:41100..41363- (Pylaiella littoralis U1_48)
TTTGCAGCAGCACTCGAGGTGATACTGGAGCGTTTCAGCAAGGATGATGT
CATCCTGAGGGATTTGGTGCACTTGGACGAAGAGGGGGAGGGCAGGAGGA
CGGAAACCCCCCTAGAGTACGTTCGGGGGGCGGTATGGGGGATGTTGTAC
GCCGACGACGCAGGCTTTGTTTCGAGATCACCCGAAGGCCTAGCTAGAAT
GATGACCATCATCGTGGAGGTGTTTGCCGCCTTTAGCTTGACCGTCTCAG
AGAAGAAGACGGAG
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