mRNA_P-littoralis_Contig631.54.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.54.1
Unique NamemRNA_P-littoralis_Contig631.54.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig631.54.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.610e-18
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:    1 VKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAAGARKDQAIRDLQGRMALEEAGSPLLLGLRAALRLTYDEPVSAFMDATALPAATP 336
            V+K+ A V    A+EA+RQKRLAQ  Q+ +AV +L++SVAA+RVLDEEAAVRARE AA +RK + + +++G +   E  S     LRAA++  Y +P+S FM+A    A TP
Sbjct:  355 VQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETAAESRKQRKVNNMRGLLEFSEVDSAQYYELRAAIKAVYHQPLSDFMEAIPPAATTP 466
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE7.610e-1849.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:168197..168534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791318.9876773-CDS-P-littoralis_Contig631:168198..1685341680791318.9876773-CDS-P-littoralis_Contig631:168198..168534Pylaiella littoralis U1_48CDSP-littoralis_Contig631 168199..168534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.54.1prot_P-littoralis_Contig631.54.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 168199..168534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.54.1

>prot_P-littoralis_Contig631.54.1 ID=prot_P-littoralis_Contig631.54.1|Name=mRNA_P-littoralis_Contig631.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
VKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAA
VRAREVAAGARKDQAIRDLQGRMALEEAGSPLLLGLRAALRLTYDEPVSA
FMDATALPAATP
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mRNA from alignment at P-littoralis_Contig631:168197..168534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.54.1 ID=mRNA_P-littoralis_Contig631.54.1|Name=mRNA_P-littoralis_Contig631.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=338bp|location=Sequence derived from alignment at P-littoralis_Contig631:168197..168534- (Pylaiella littoralis U1_48)
GTCAAGAAAGAGAGCGCGGCGGTGGCAAAAAACGTTGCCTCGGAGGCCTA
TCGCCAGAAGAGACTGGCGCAAACCTCTCAATTGGCGCAGGCCGTGGTGT
CGCTGTCGGAGTCTGTTGCCGCAAAGCGGGTACTAGATGAAGAGGCCGCC
GTCCGGGCACGCGAGGTAGCGGCCGGTGCCCGTAAGGACCAGGCGATAAG
GGATCTACAGGGGCGAATGGCGTTGGAGGAAGCTGGTTCCCCACTTTTGC
TTGGGTTGCGTGCCGCACTCCGACTAACGTATGATGAACCCGTAAGTGCC
TTCATGGACGCCACCGCTTTGCCTGCGGCGACACCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:168197..168534-

>mRNA_P-littoralis_Contig631.54.1 ID=mRNA_P-littoralis_Contig631.54.1|Name=mRNA_P-littoralis_Contig631.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig631:168197..168534- (Pylaiella littoralis U1_48)
GTCAAGAAAGAGAGCGCGGCGGTGGCAAAAAACGTTGCCTCGGAGGCCTA
TCGCCAGAAGAGACTGGCGCAAACCTCTCAATTGGCGCAGGCCGTGGTGT
CGCTGTCGGAGTCTGTTGCCGCAAAGCGGGTACTAGATGAAGAGGCCGCC
GTCCGGGCACGCGAGGTAGCGGCCGGTGCCCGTAAGGACCAGGCGATAAG
GGATCTACAGGGGCGAATGGCGTTGGAGGAAGCTGGTTCCCCACTTTTGC
TTGGGTTGCGTGCCGCACTCCGACTAACGTATGATGAACCCGTAAGTGCC
TTCATGGACGCCACCGCTTTGCCTGCGGCGACACCC
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