mRNA_P-littoralis_Contig631.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.45.1
Unique NamemRNA_P-littoralis_Contig631.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig631.45.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.350e-43
Identity = 72/94 (76.60%), Postives = 90/94 (95.74%), Query Frame = 1
Query:    1 EKDVKDALARRTQGETEWGTPAGSIDVSTKNEVVEVKHYKNWKNGIGQVEAYGEYYPLHRKR-HLFAHEGEKASKYFEMATKLCAKDGIRVTFE 279
            E+DV+DALAR+T+G+TEWGTPAGSIDV T++EV+E+KH+KNWK+G+GQV+AYGE++P H++R HLFAHEGEKA KYFEMAT+LCAKDGIRVTFE
Sbjct:  664 ERDVRDALARQTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKQRLHLFAHEGEKALKYFEMATRLCAKDGIRVTFE 757          
BLAST of mRNA_P-littoralis_Contig631.45.1 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC)

HSP 1 Score: 83.6 bits (205), Expect = 6.610e-17
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   10 VKDALARRTQGETEWGTPAGSIDVSTKNEVVEVKHYKNWKNGIGQVEAYGEYYPLHRKR-HLFA--------HEGEKASKYFEMATKLCAKDGIRVTFE 279
            ++D LA    G+TE  TP G IDV T  EV+EVKHY+ + +G GQV  YGEY+PL +KR HLFA         + E   +  EMA K+C    I VTFE
Sbjct:  293 IRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVMGYGEYHPLLKKRLHLFALIEDVRSDRKIEDLDRKIEMAEKMCVTSNIEVTFE 391          
BLAST of mRNA_P-littoralis_Contig631.45.1 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.820e-17
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   10 VKDALARRTQGETEWGTPAGSIDVSTKNEVVEVKHYKNWKNGIGQVEAYGEYYPLHRKR-HLFAHEGEKAS-KYFEM 234
            V+DALA    GE E  TPAG+IDV +  EV+EVK+YK WK+G+GQV AY  ++P   KR HLFAH GE  + KYF++
Sbjct:   55 VRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFAHAGEVGTQKYFDL 131          
BLAST of mRNA_P-littoralis_Contig631.45.1 vs. uniprot
Match: UPI001683CC24 (hypothetical protein n=1 Tax=Anabaena sphaerica TaxID=212446 RepID=UPI001683CC24)

HSP 1 Score: 80.5 bits (197), Expect = 1.020e-16
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 EKDVKDALARRTQGETEWGTPAGSIDVSTKNEVVEVKHYKNWKNGIGQVEAYGEYYPLHRKR-HLFAHEGEKASKYFEMATKLCAKDGIRVTFE 279
            EK ++  LA+   G+ E  TP G IDV T  E++EVK  +NWK  +GQV  YG+YYP H+KR HL+   G+    +  +  K C K  + VT+E
Sbjct:  114 EKSIQSTLAKELNGKIEIETPCGKIDVLTSTELIEVKAIRNWKEALGQVIVYGDYYPSHQKRIHLY---GDTQEAFLSLIRKHCVKRNVIVTWE 204          
BLAST of mRNA_P-littoralis_Contig631.45.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.640e-16
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   10 VKDALARRTQGETEWGTPAGSIDVSTKNEVVEVKHYKNWKNGIGQVEAYGEYYP-LHRKRHLFAHEGEK-ASKYFEMATKLCAK 255
            V+DALA    G TE  TP+G IDV ++ EV+EVK+Y+ WK+G+GQV AY  +YP L R+ HLFAH G++   KY E+A  +  K
Sbjct:  287 VRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFAHTGDRDTDKYCELAKAIAFK 370          
BLAST of mRNA_P-littoralis_Contig631.45.1 vs. uniprot
Match: K9VSH3_9CYAN (Uncharacterized protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=K9VSH3_9CYAN)

HSP 1 Score: 73.6 bits (179), Expect = 8.860e-14
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   40 GETEWGTPAGSIDVSTKNEVVEVKHYKNWKNGIGQVEAYGEYYPLHRKR-HLFAHEGEKASKYFEMATKLCAKDGIRVTFE 279
            GETE  TPAGSID+ T ++++EVKH KNWK  IGQV  Y  YYP H KR HLF   G     + +   + C +  I +T+E
Sbjct:  168 GETEVLTPAGSIDLLTTSQLIEVKHIKNWKTAIGQVLVYSAYYPSHEKRIHLF---GTCHESFLDTVKQHCQRQNIVLTWE 245          
BLAST of mRNA_P-littoralis_Contig631.45.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.300e-13
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   10 VKDALARRTQGETEWGTPAGSIDVSTKNEVVEVKHYKNWKNGIGQVEAYGEYYP-LHRKRHLFAH 201
            V+DALA    G TE  TP+G IDV ++ EV+EVK+Y+NWK G+GQV  Y  +YP L R+ HLFAH
Sbjct:  721 VRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAH 785          
BLAST of mRNA_P-littoralis_Contig631.45.1 vs. uniprot
Match: A0A2P0VMM5_9PHYC (Uncharacterized protein n=1 Tax=Tetraselmis virus 1 TaxID=2060617 RepID=A0A2P0VMM5_9PHYC)

HSP 1 Score: 60.8 bits (146), Expect = 1.220e-9
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 EKDVKDALARRTQGET-EWGTPAGSIDVSTKNEVVEVKHYKNWKNGIGQVEAYGEYYPLHRKR-HLFAHEGEKASKYFEMATKLCAKDGIRVT 273
            E  V+D LA++  G   E    +G ID+ T  E++EVK    WK  +GQ+ AYGE +P H+KR HLF     K  +++ +A   C + G+ +T
Sbjct:   29 ESTVRDRLAKQLVGSRIEVPCSSGLIDIVTPTEIIEVKRAPLWKAAMGQILAYGEDFPKHKKRVHLFG----KDDQHYRLAAVTCERFGVALT 117          
BLAST of mRNA_P-littoralis_Contig631.45.1 vs. uniprot
Match: L7RE44_9VIRU (KilA N-domain protein n=1 Tax=Acanthamoeba polyphaga moumouvirus TaxID=1269028 RepID=L7RE44_9VIRU)

HSP 1 Score: 59.7 bits (143), Expect = 1.270e-8
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 EKDVKDALARRTQGETEWGTPAGSIDVSTKNEVVEVKHYKNWKNGIGQVEAYGEYYPLHRKR 186
            EK +K  L ++  G TE  T  G ID+ TKN +VE+K Y NWK  +GQ+ AY + YP   KR
Sbjct:  150 EKQLKLKLQKKLGGTTEVPTSCGKIDLLTKNYIVEIKTYNNWKAALGQILAYSDQYPDKNKR 211          
BLAST of mRNA_P-littoralis_Contig631.45.1 vs. uniprot
Match: A0A2P1EKB3_9VIRU (KilA-N domain-containing protein n=3 Tax=Mimivirus TaxID=315393 RepID=A0A2P1EKB3_9VIRU)

HSP 1 Score: 55.5 bits (132), Expect = 5.480e-7
Identity = 29/91 (31.87%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 EKDVKDALARRTQGETEWGTPAGSIDVSTKNEVVEVKHYKNWKNGIGQVEAYGEYYPLHRKRHLFAHEGEKASKYFEMATKLCAKDGIRVT 273
            EK +++ L +   G  E  T  G+ID+ TKN ++E+K+Y NWK+G+GQ+ +Y  ++P   K     + GE      +   K+C +  I+++
Sbjct:  179 EKIIQEELQKNLGGLIEVKTKVGAIDLLTKNTIIEIKNYDNWKHGLGQLLSYSIFHPDKTKCLYLFNVGENKISSIK---KICKQYSIKLS 266          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G3S0_ECTSI1.350e-4376.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B5LW94_9PHYC6.610e-1747.47Uncharacterized protein n=1 Tax=Feldmannia species... [more]
D7G319_ECTSI6.820e-1755.84FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
UPI001683CC241.020e-1642.55hypothetical protein n=1 Tax=Anabaena sphaerica Ta... [more]
A0A6H5JJP2_9PHAE4.640e-1651.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K9VSH3_9CYAN8.860e-1448.15Uncharacterized protein n=2 Tax=Oscillatoriales Ta... [more]
A0A6H5L5N7_9PHAE4.300e-1356.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P0VMM5_9PHYC1.220e-937.63Uncharacterized protein n=1 Tax=Tetraselmis virus ... [more]
L7RE44_9VIRU1.270e-846.77KilA N-domain protein n=1 Tax=Acanthamoeba polypha... [more]
A0A2P1EKB3_9VIRU5.480e-731.87KilA-N domain-containing protein n=3 Tax=Mimivirus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:150636..150914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog449447.MAE_20210
Model size279
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.54e-15
EggNOG OGs2EUDG@1|root,338X1@2|Bacteria
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791318.7645705-CDS-P-littoralis_Contig631:150635..1509141680791318.7645705-CDS-P-littoralis_Contig631:150635..150914Pylaiella littoralis U1_48CDSP-littoralis_Contig631 150636..150914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.45.1prot_P-littoralis_Contig631.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 150636..150914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.45.1

>prot_P-littoralis_Contig631.45.1 ID=prot_P-littoralis_Contig631.45.1|Name=mRNA_P-littoralis_Contig631.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
EKDVKDALARRTQGETEWGTPAGSIDVSTKNEVVEVKHYKNWKNGIGQVE
AYGEYYPLHRKRHLFAHEGEKASKYFEMATKLCAKDGIRVTFE
back to top

mRNA from alignment at P-littoralis_Contig631:150636..150914-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.45.1 ID=mRNA_P-littoralis_Contig631.45.1|Name=mRNA_P-littoralis_Contig631.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig631:150636..150914- (Pylaiella littoralis U1_48)
GAAAAGGATGTCAAGGATGCGCTTGCTCGCCGCACCCAAGGCGAAACCGA GTGGGGAACCCCGGCAGGCTCTATTGACGTGTCCACAAAGAACGAGGTAG TCGAGGTTAAGCATTACAAAAATTGGAAGAATGGGATCGGTCAGGTTGAG GCCTATGGAGAATACTATCCCTTGCACAGGAAACGTCATCTCTTCGCACA CGAGGGAGAGAAAGCATCAAAGTACTTTGAAATGGCCACGAAATTGTGTG CGAAAGACGGAATTCGCGTTACATTTGAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig631:150636..150914-

>mRNA_P-littoralis_Contig631.45.1 ID=mRNA_P-littoralis_Contig631.45.1|Name=mRNA_P-littoralis_Contig631.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig631:150636..150914- (Pylaiella littoralis U1_48)
GAAAAGGATGTCAAGGATGCGCTTGCTCGCCGCACCCAAGGCGAAACCGA
GTGGGGAACCCCGGCAGGCTCTATTGACGTGTCCACAAAGAACGAGGTAG
TCGAGGTTAAGCATTACAAAAATTGGAAGAATGGGATCGGTCAGGTTGAG
GCCTATGGAGAATACTATCCCTTGCACAGGAAACGTCATCTCTTCGCACA
CGAGGGAGAGAAAGCATCAAAGTACTTTGAAATGGCCACGAAATTGTGTG
CGAAAGACGGAATTCGCGTTACATTTGAA
back to top