mRNA_P-littoralis_Contig631.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.41.1
Unique NamemRNA_P-littoralis_Contig631.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig631.41.1 vs. uniprot
Match: A0A6H5L612_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L612_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.400e-26
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    1 HCSFEVAGQALAIEGGWSVDLVERAFSAGDSEQLTRLRAALRRLTVSVLNGSENPAITDDMGGLQTARDEDAIRRLALDYRQHIRNPDDFRNVV 282
            HC  EV  QA AIE GW +DLVERAFSAGDSE+L R+R ALR LT+ V N +ENP +    GG +TA ++  IRRLAL++RQ + N DDFR+ V
Sbjct:   13 HCWLEVVAQACAIEEGWGIDLVERAFSAGDSERLFRVRTALRHLTIKVFNLTENPNVLQGFGGPRTACNQRDIRRLALNFRQDVTNADDFRDTV 106
[Close]
BLAST of mRNA_P-littoralis_Contig631.41.1 vs. uniprot
Match: D7G3R9_ECTSI (Helicase_C_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R9_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 9.430e-24
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:    1 HCSFEVAGQALAIEGGWSVDLVERAFSAGDSEQLTRLRAALRRLTVSVLNGSENPAITDDMGGLQTARDEDAIRRLALDYRQHIRNPDDFRNVV 282
            HC  EV  Q  AI  GW+ DLVERAF+ GD E+L R+R A+R LT+ V N ++NP I + + G +TA DEDAIRRLAL++ Q   N DDFR+V+
Sbjct:  397 HCWLEVVAQGYAIGEGWAPDLVERAFTNGDRERLFRIRTAIRSLTIKVFNVTKNPLIREGLDGPETACDEDAIRRLALNFHQDPTNMDDFRSVI 490
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L612_9PHAE1.400e-2658.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3R9_ECTSI9.430e-2454.26Helicase_C_4 domain-containing protein n=1 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:143750..144032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3R9
PFAMsAAA_34,Helicase_C_4,Transposase_24
Model size283
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.55e-24
EggNOG OGsKOG1513@1|root,KOG1513@2759|Eukaryota
Descriptioncellular response to interleukin-11
Cds size282
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791318.611433-CDS-P-littoralis_Contig631:143749..1440311680791318.611433-CDS-P-littoralis_Contig631:143749..144031Pylaiella littoralis U1_48CDSP-littoralis_Contig631 143750..144031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.41.1prot_P-littoralis_Contig631.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 143750..144031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.41.1

>prot_P-littoralis_Contig631.41.1 ID=prot_P-littoralis_Contig631.41.1|Name=mRNA_P-littoralis_Contig631.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
HCSFEVAGQALAIEGGWSVDLVERAFSAGDSEQLTRLRAALRRLTVSVLN
GSENPAITDDMGGLQTARDEDAIRRLALDYRQHIRNPDDFRNVV
back to top

mRNA from alignment at P-littoralis_Contig631:143750..144032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.41.1 ID=mRNA_P-littoralis_Contig631.41.1|Name=mRNA_P-littoralis_Contig631.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=283bp|location=Sequence derived from alignment at P-littoralis_Contig631:143750..144032+ (Pylaiella littoralis U1_48)
CACTGCAGTTTCGAGGTAGCAGGGCAGGCACTCGCTATTGAGGGCGGATG
GTCCGTTGACCTGGTCGAACGTGCGTTCTCAGCCGGAGACAGCGAGCAGC
TCACCCGTCTACGTGCCGCTCTCCGTCGCCTGACCGTCTCGGTGTTAAAC
GGGTCTGAGAACCCCGCGATCACTGATGACATGGGAGGCCTACAGACTGC
ACGCGATGAGGATGCCATCAGGAGGCTGGCCCTCGACTACCGCCAGCACA
TCAGAAACCCAGATGACTTCCGCAATGTCGTCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig631:143750..144032+

>mRNA_P-littoralis_Contig631.41.1 ID=mRNA_P-littoralis_Contig631.41.1|Name=mRNA_P-littoralis_Contig631.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig631:143750..144032+ (Pylaiella littoralis U1_48)
CACTGCAGTTTCGAGGTAGCAGGGCAGGCACTCGCTATTGAGGGCGGATG
GTCCGTTGACCTGGTCGAACGTGCGTTCTCAGCCGGAGACAGCGAGCAGC
TCACCCGTCTACGTGCCGCTCTCCGTCGCCTGACCGTCTCGGTGTTAAAC
GGGTCTGAGAACCCCGCGATCACTGATGACATGGGAGGCCTACAGACTGC
ACGCGATGAGGATGCCATCAGGAGGCTGGCCCTCGACTACCGCCAGCACA
TCAGAAACCCAGATGACTTCCGCAATGTCGTC
back to top