mRNA_P-littoralis_Contig631.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.37.1
Unique NamemRNA_P-littoralis_Contig631.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig631.37.1 vs. uniprot
Match: A0A6H5JPD9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD9_9PHAE)

HSP 1 Score: 486 bits (1251), Expect = 6.280e-160
Identity = 272/381 (71.39%), Postives = 303/381 (79.53%), Query Frame = 1 
Query:    1 MTDVEAQISADEALARRIQATEQQRESTPLINYSNLPA---AGSMNDSXXXXXXXXXXXXXXXXXSGQQLGLGGGTIQAGSAEAE--PAARRNA---------HVRMNVVDDGVRGMNASRFGLLLLTLVNLPLIAAGLVILTLHWQDTEPCDSEHRQKWRLWALLSVVRMILITPVVMVRWKLEGQREEDRNQAVNHLSSNMRNSLDIVGLVWFVIGHMWLLSKGDCETPSDSPIYKLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGTQTQKGARQEEIEKLPTVKFGEMQNMQDESCPICLVDYEAEDELRNLPCDHAFHKPCADSWLAVNASCPNCRARCFETEDEGGEEKTAE--PIPVGDNLA 1095
            MTDVEAQISADEALARRIQA E QRESTPLI+ +N  A     S+N+S                 SG+ +GLG    QAGS EAE  PA RR           HV M++ DDGVRG++ASR  LLLLTLVNLPLIAAG+VIL LHWQDT+ CD +HR+KW+ WALLSVVRM+LITPVVMVRW++EGQREEDRNQA++HLSSNMRNSLDIVGLVWFVIGHMWLL    C+ P DSPIY+LCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQG Q  KGARQ+EIEKLP VK+ E+Q+M+D++C IC+VDYEAEDELR LPC HAFHK C DSWLAVNASCPNCRARCFE ED  GEEK A+  P PVGDNLA
Sbjct:   64 MTDVEAQISADEALARRIQANEHQRESTPLISLTNRQAIMNVASINESNEGNSG-----------SGR-IGLGELIQQAGSDEAETQPATRRPVNRATNRNVRHVWMHIADDGVRGLSASRLSLLLLTLVNLPLIAAGVVILILHWQDTDVCDVDHRRKWKWWALLSVVRMMLITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQNQGCDNPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQRLKGARQDEIEKLPVVKYREVQDMEDDACAICIVDYEAEDELRKLPCRHAFHKTCVDSWLAVNASCPNCRARCFE-EDGEGEEKIADDAPAPVGDNLA 431
[Close]
BLAST of mRNA_P-littoralis_Contig631.37.1 vs. uniprot
Match: A0A7S2V5V5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5V5_9STRA)

HSP 1 Score: 241 bits (616), Expect = 3.870e-68
Identity = 136/301 (45.18%), Postives = 187/301 (62.13%), Query Frame = 1 
Query:  208 GGGTIQAGSAEAEPAARRNAHVRMNVVDDGVRGMNASRFGLLLLTLVNLPLIAAGLVILTLHWQDTEPCDSEHRQKWRLWALLSVVRMILITPVVMVRWKLEGQREEDRNQAVNHLSSNMRNSLDIVGLVWFVIGHMWLLSKGD-CETPSDSPIYKLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGTQTQKGARQEEIEKLPTVKFGE-MQNMQDESCPICLVDYEAEDELRNLPCDHAFHKPCADSWLAVNASCPNCRARCFET--EDEGGEEKTAEP--IPVGDNL 1092
            GGG + A +    P  R N  VRMNV+   +R +N  +  +L+  LVN+P I A + +L+LHW DT  CD E RQ+WR WAL+S VRM + T V++V +     R  D  +    L SN+RN +D +GL+WFV+G+MWL  + + C+ P  SPIY+LC+  ++ITYIHICLPC++       XXXXXXXX R++  LQ     KGA Q  I++L  +KF   +  +++E+CPICL D+   D LR LPCDH FH+ C D WL +NASCPNCR+   E   EDE   E  +E   + VGD +
Sbjct:   63 GGGAVVAVTT---PGTRDNRRVRMNVLGTSMREVNNRKLVVLVTLLVNIPQIVAAIAVLSLHWGDTFACDPERRQRWRWWALISTVRMAIYTVVMVVLYFFTLHRPRDSREVA--LLSNLRNGVDALGLIWFVVGNMWLFGQSESCDNPGSSPIYQLCVAMLLITYIHICLPCLIXXXXXXXXXXXXXXXXRVLSRLQDPMRGKGANQAAIDRLEAIKFQPGVTEVEEETCPICLTDFVEGDGLRLLPCDHCFHQSCVDEWLLLNASCPNCRSTILEEGEEDEDSLEDDSEVARLHVGDQI 358
[Close]
BLAST of mRNA_P-littoralis_Contig631.37.1 vs. uniprot
Match: A0A7S3XQH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQH4_HETAK)

HSP 1 Score: 224 bits (571), Expect = 7.110e-63
Identity = 112/266 (42.11%), Postives = 175/266 (65.79%), Query Frame = 1 
Query:  253 ARRNAHVRMNVVDDGVRGMNASRFGLLLLTLVNLPLIAAGLVILTLHWQDTEPCDSEHRQKWRLWALLSVVRMILITPVVMVRWKLEGQREEDRNQAVNHLSSNMRNSLDIVGLVWFVIGHMWLLSKGD-CETPSDSPIYKLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGTQTQKGARQEEIEKLPTVKFG-EMQNMQDESCPICLVDYEAEDELRNLPCDHAFHKPCADSWLAVNASCPNCRARCFETEDE 1044
            A++N  VRMNV+ +G+R +N  R  + L  +VNLP + A  V+L+LHW D   CD++HR++W+ WA ++  R+ + T +++  + +  +R  D  + +  + SN RN +D +GL+WFV+G+MWL  + + C+    SP+Y+LC+  +++TY+HICLPC++       XXXXXXXX R++  LQ     KGA Q  I+KL  +K+  ++  +++ +CPICL +YE  +ELR+LPC H+FHK C D WL VNA+CPNCR    + E E
Sbjct:    8 AQQNQRVRMNVLQNGIREVNNRRLVVFLTLVVNLPQLVAAAVVLSLHWDDDAVCDADHRERWKWWAAVAAARLAVYTGLLVALYLVLLRRPRDAREVI--VLSNARNGVDALGLIWFVVGNMWLFGQTESCDGAGASPVYQLCVAMLLVTYLHICLPCLIXXXXXXXXXXXXXXXXRVLARLQDPMRGKGANQAAIDKLKIIKYRPDLPEIEEPTCPICLNEYENGEELRSLPCKHSFHKKCVDEWLLVNATCPNCRTTILDEEQE 271
[Close]
BLAST of mRNA_P-littoralis_Contig631.37.1 vs. uniprot
Match: A0A7S2DZB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DZB6_9STRA)

HSP 1 Score: 226 bits (576), Expect = 1.130e-62
Identity = 114/281 (40.57%), Postives = 175/281 (62.28%), Query Frame = 1 
Query:  268 HVRMNVVDDGVRGMNASRFGLLLLTLVNLPLIAAGLVILTLHWQDTEPCDSEHRQKWRLWALLSVVRMIL-ITPVVMVRWKLEGQREEDRNQAVNHLSSNMRNSLDIVGLVWFVIGHMWLLSKGD------CETPSDSPIYKLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGTQTQKGARQEEIEKLPTVKFGEMQNMQDE-----SCPICLVDYEAEDELRNLPCDHAFHKPCADSWLAVNASCPNCRARCFETEDEGGEEKTAEPI 1074
            +VR+NV++D +R +++SR  +  L L N P I A +V+L+LHW D   CD+EHR KWR+WAL++ +RM+L +  + ++        ++DR   +  +  N+RN LD  GLVWF++G+MWL    D      C  P+ SPIY LCL  ++  YIHICLPCI+ +L++PV   XXXXXI ++  ++  +  KGA +  I+KLP VKF ++ +++       SCPICL+D+  +DE+R LPC H FH  C   WL +N++CP+CR    +      E+ + E +
Sbjct:   61 NVRVNVLNDSLREVSSSRIAVSALILFNFPQIVAAIVVLSLHWPDDSVCDAEHRLKWRVWALIATIRMVLHMVTIFLIIGVSRMVTQQDRQTRLLMILHNLRNLLDAAGLVWFLVGNMWLFGGSDEKVTTVCVRPTQSPIYNLCLAMVVFNYIHICLPCIVAILMIPVLCFXXXXXIHMLRWMRDPEEGKGASEAAIKKLPLVKFRDLSDVESTMSSQLSCPICLMDFGPDDEVRILPCKHYFHDQCIGEWLGMNSTCPSCRKNILKDVPSADEKSSNETV 341
[Close]
BLAST of mRNA_P-littoralis_Contig631.37.1 vs. uniprot
Match: D7FY42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY42_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 2.290e-61
Identity = 101/119 (84.87%), Postives = 112/119 (94.12%), Query Frame = 1 
Query:  277 MNVVDDGVRGMNASRFGLLLLTLVNLPLIAAGLVILTLHWQDTEPCDSEHRQKWRLWALLSVVRMILITPVVMVRWKLEGQREEDRNQAVNHLSSNMRNSLDIVGLVWFVIGHMWLLSK 633
            M++ DDGVRGMNASR GLLLLTLVNLPLIAAG+VILTLHWQDT+ CD EHR+KW+ WALLSVVRM+LITPVVMVRW++EGQREEDRNQA++HLSSNMRNSLDIVGLVWFVIGHMWLL  
Sbjct:    1 MHIADDGVRGMNASRLGLLLLTLVNLPLIAAGVVILTLHWQDTDVCDVEHRRKWKWWALLSVVRMMLITPVVMVRWRVEGQREEDRNQAIDHLSSNMRNSLDIVGLVWFVIGHMWLLQN 119
[Close]
BLAST of mRNA_P-littoralis_Contig631.37.1 vs. uniprot
Match: A0A835Z0W6_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W6_9STRA)

HSP 1 Score: 189 bits (479), Expect = 4.010e-50
Identity = 103/257 (40.08%), Postives = 148/257 (57.59%), Query Frame = 1 
Query:  328 LLLLTLVNLPLIAAGLVILTLHWQDTEPCDSEHRQKWRLWALLSVVRMILITPVVMVRWKLEGQREEDRNQAVNHLSSNMRNSLDIVGLVWFVIGHMWLLSKGD--CETPSDSPIYKLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGTQTQKGARQEEIEKLPTVKFGEMQNMQ------------------------DESCPICLVDYEAEDELRNLPCDHAFHKPCADSWLAVNASCPNCRA 1020
            ++L  +VN+P I  G  +L  HW+D   CD+EHR +WR+W++L +  +   T +    W+  G+   D    V+H  +  +N+L+ +GL+WFV G++WL    D  C+  S S IY+LCLV I++ Y+ ICLPC+L +L+VPV  XXXXXX R++         +GA Q  I+ LP VK+G+                             + +CPICL DY   DELR LPC HA H+ C DSWLA++A+CPNCRA
Sbjct:    1 MILTAIVNIPQIIGGAFVLAAHWRDDAACDAEHRARWRVWSVLELAIIAGHTAIRAATWRA-GEARAD----VSHALATAKNALEALGLIWFVAGNLWLFGGQDEGCQDASSSAIYQLCLVLIVVLYVQICLPCLLAVLMVPVLCXXXXXXXRVLSYFHDPMAGRGASQCAIDALPIVKYGDTSAXXXXXXXXXXXXXXXXXGALPTGAALETACPICLNDYAVGDELRQLPCAHALHRACLDSWLAISATCPNCRA 252
[Close]
BLAST of mRNA_P-littoralis_Contig631.37.1 vs. uniprot
Match: D7FY41_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY41_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 3.120e-49
Identity = 89/123 (72.36%), Postives = 99/123 (80.49%), Query Frame = 1 
Query:  733 MLLVPVXXXXXXXXIRLMGMLQGTQTQKGARQEEIEKLPTVKFGEMQNMQDESCPICLVDYEAEDELRNLPCDHAFHKPCADSWLAVNASCPNCRARCFETEDEGGEEKTAE--PIPVGDNLA 1095
            MLLVPV        IRLMGMLQG Q +KGARQ+EIEKLP VK+ E+Q+M+D++C ICLV+YEAEDELR LPC HAFHK C DSWLAVNASCPNCRARCFE ED  GEEK A+  P PVGDNLA
Sbjct:    1 MLLVPVLCFCLPCVIRLMGMLQGPQRRKGARQDEIEKLPVVKYREVQDMEDDACAICLVEYEAEDELRKLPCRHAFHKTCVDSWLAVNASCPNCRARCFEEEDGEGEEKIADDAPAPVGDNLA 123
[Close]
BLAST of mRNA_P-littoralis_Contig631.37.1 vs. uniprot
Match: A0A7S1U290_9STRA (Hypothetical protein n=5 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U290_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.950e-47
Identity = 109/297 (36.70%), Postives = 162/297 (54.55%), Query Frame = 1 
Query:  187 SGQQLGLGGGTIQAGSAEAEPAARRNAHVRMNVVDDGVRGMNASRFGLLLLTLVNLPLIAAGLVILTLHWQDTEPCDSEHRQKWRLWALLSVVRMILITPVVMVRWKLEGQREEDRNQAVNHLSSNM------------RNSLDIVGLVWFVIGHMWLLSKGDCET-PSDSPIYKLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGTQT---QKGARQEEIEKLPTVKFGEMQNMQDE--SCPICLVDYEAEDELRNLPCDHAFHKPCADSWLAVNASCPNCRAR 1023
            SGQ+   G G   A  A  + AARR   +R+N  ++G R + +SR  LL+   V +P IAAG+ +L  +W D   CD EH  KWR WAL+SVVRM     V+ +   L  +      + V                   ++ +D++GLVWF+IG++W+LS  D       S ++ LC+ +I++ YI ICLPC + +  +PV        +R M  +Q  +    ++GA ++ I+++P  KF   Q   D+  +C ICL +Y  ED+LR L C HAFHK C D WL +N SCP+CRA+
Sbjct:    4 SGQRGLPGDGAAGAVGARQQRAARR---LRLNAAEEGWRRILSSRTLLLITMGVYVPQIAAGIGVLATNWNDPNACDLEHLLKWRWWALVSVVRMAAFLLVMTMDHVLVDEERSPLREFVLRTGGEEQLILWHDKLARGKHLVDVLGLVWFIIGNLWVLSDDDSSPGQGKSALFILCVFFIVVYYIQICLPCAVAVAAIPVLCFCLPCLLRFMVRMQDAEAHAERRGAEEDVIDRIPIRKFASSQLSSDDDATCAICLCEYADEDQLRVLHCGHAFHKDCLDPWLRLNGSCPSCRAK 297
[Close]
BLAST of mRNA_P-littoralis_Contig631.37.1 vs. uniprot
Match: A0A8K1CPU5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPU5_PYTOL)

HSP 1 Score: 175 bits (443), Expect = 6.470e-45
Identity = 110/286 (38.46%), Postives = 159/286 (55.59%), Query Frame = 1 
Query:  244 EPAARRNAH-VRMNVVDDGV---RGMNASRFGLLLLTLVNLPLIAAGLVILTLHWQDTEPCDSEHRQKWRLWALLSVVRMILITPVVMVRWKLEGQRE----EDRNQAVNHLSSNMRNSLDIVGLVWFVIGHMWLLSKGDCETPSDSPIYKLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGTQTQKGARQEEIEKLPTVKFGE-MQNMQDESCPICLVDYEAEDELRNLPCDHAFHKPCADSWLAVNASCPNCRARCFETEDEGGEEKTAEPI 1074
            +P     AH VR+NV++  V   R    SR  + +LT+VN+P I A  VIL L W ++  C      + ++W LL  + + L   +  V + L G R     + R + +++LS N++  LD+ GL WF++G+MW++S G       S +Y+L +  I+I+Y  I LPCILL+ L+PV        IR++  LQ     KGA +E I +L T KF   M   +D SC ICL DYE + ELR LPC+H FHK C D WL VN++CP CR   +E    G   +T E +
Sbjct:   38 DPTLNEEAHAVRLNVLNSSVQEARDARNSRLIMWVLTVVNVPQILAAAVILALKWTESTLC-----YRIQIWVLLHTIHLSLTLALEWVMYYLNGGRTNRVLQMRERYMSYLS-NVKYGLDLAGLFWFLVGNMWVISDG-ARCDDGSTMYQLAMWMIVISYAKIFLPCILLLALLPVICFCLPCVIRILSRLQDPMRGKGATKEAINRLSTRKFAAAMFPPEDSSCCICLNDYEPQQELRVLPCEHHFHKECVDEWLIVNSTCPTCRKSIYE--GTGDAPRTQEDV 314
[Close]
BLAST of mRNA_P-littoralis_Contig631.37.1 vs. uniprot
Match: A0A024GTZ9_9STRA (RING-type domain-containing protein n=5 Tax=Albugo TaxID=65356 RepID=A0A024GTZ9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 4.880e-43
Identity = 112/327 (34.25%), Postives = 173/327 (52.91%), Query Frame = 1 
Query:  187 SGQQLGLGGGTIQAGSAEAEPAARRN-------AH-VRMNVVDDGV---RGMNASRFGLLLLTLVNLPLIAAGLVILTLHWQDTEPCDSEHRQKWRLWALLSVVRMILITPVVMVRWKLE----GQREEDRNQAVNHLSSNMRNSLDIVGLVWFVIGHMWLLSKGDCE------------------TPS--DSPIYKLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGTQTQKGARQEEIEKLPTVKFGEMQNMQDE-SCPICLVDYEAEDELRNLPCDHAFHKPCADSWLAVNASCPNCRARCFETEDEGGEEK 1059
            SGQQ  + G + + G+A A     R+       AH VR+NV++  V   R   +SR  +  +T +++P I A +V+L+L W   E   S    + ++W L+  + M ++  V  + + L      +  E R Q + +L  N++  LD++G+ WF++G+MW++S  D +                  +PS  DS +Y+L    I+ITY+ I LPCILL++L+PV        IR++   Q     KGA  E I +L    + +    +D+ +C ICL DY  E+ELR LPC H FHK CAD WL VNA+CP CR   +ET  E  E++
Sbjct:    3 SGQQSNIAGTSGRRGAAVAARLLGRDGRPHNEEAHAVRLNVLNSSVQEARDARSSRIIMWAITFISVPQILASIVVLSLKWHTREKLFSSACYRLQVWVLVQAIHMSVVLGVEWIVYYLNTCYTNRVIELREQYMRYLG-NIKYGLDLLGVFWFLVGNMWVISDDDAQNGKPDAANGERHEDVAPLSPSHCDSSLYQLAFWMIVITYVKIFLPCILLLILLPVICFCLPCLIRVLSRFQDPMRGKGASHETIARLACTNYKQDMFARDDCNCCICLNDYVEEEELRLLPCRHHFHKQCADEWLIVNATCPTCRLSIYETASEDSEQQ 328
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPD9_9PHAE6.280e-16071.39RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2V5V5_9STRA3.870e-6845.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XQH4_HETAK7.110e-6342.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DZB6_9STRA1.130e-6240.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
D7FY42_ECTSI2.290e-6184.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z0W6_9STRA4.010e-5040.08RING-type domain-containing protein n=1 Tax=Tribon... [more]
D7FY41_ECTSI3.120e-4972.36RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S1U290_9STRA1.950e-4736.70Hypothetical protein n=5 Tax=Phaeomonas parva TaxI... [more]
A0A8K1CPU5_PYTOL6.470e-4538.46Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024GTZ9_9STRA4.880e-4334.25RING-type domain-containing protein n=5 Tax=Albugo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:122853..130233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FY41
PFAMszf-RING_11,zf-RING_2
Model size2941
Max annot lvl2759|Eukaryota
KEGG koko:K10635
Hectar predicted targeting categoryother localisation
Exons8
Evalue1.81e-53
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_007010.1
EC2.3.2.27
Descriptionubiquitin-protein transferase activity
Cds size1098
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.37.1prot_P-littoralis_Contig631.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 122853..128390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791318.483863-CDS-P-littoralis_Contig631:122852..1229091680791318.483863-CDS-P-littoralis_Contig631:122852..122909Pylaiella littoralis U1_48CDSP-littoralis_Contig631 122853..122909 +
1680791318.4958105-CDS-P-littoralis_Contig631:123515..1238031680791318.4958105-CDS-P-littoralis_Contig631:123515..123803Pylaiella littoralis U1_48CDSP-littoralis_Contig631 123516..123803 +
1680791318.5102913-CDS-P-littoralis_Contig631:124972..1251221680791318.5102913-CDS-P-littoralis_Contig631:124972..125122Pylaiella littoralis U1_48CDSP-littoralis_Contig631 124973..125122 +
1680791318.5217204-CDS-P-littoralis_Contig631:125458..1256011680791318.5217204-CDS-P-littoralis_Contig631:125458..125601Pylaiella littoralis U1_48CDSP-littoralis_Contig631 125459..125601 +
1680791318.5333066-CDS-P-littoralis_Contig631:126201..1262351680791318.5333066-CDS-P-littoralis_Contig631:126201..126235Pylaiella littoralis U1_48CDSP-littoralis_Contig631 126202..126235 +
1680791318.5481634-CDS-P-littoralis_Contig631:126712..1268931680791318.5481634-CDS-P-littoralis_Contig631:126712..126893Pylaiella littoralis U1_48CDSP-littoralis_Contig631 126713..126893 +
1680791318.557923-CDS-P-littoralis_Contig631:127442..1275581680791318.557923-CDS-P-littoralis_Contig631:127442..127558Pylaiella littoralis U1_48CDSP-littoralis_Contig631 127443..127558 +
1680791318.5682628-CDS-P-littoralis_Contig631:128261..1283901680791318.5682628-CDS-P-littoralis_Contig631:128261..128390Pylaiella littoralis U1_48CDSP-littoralis_Contig631 128262..128390 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791318.5786102-UTR-P-littoralis_Contig631:128390..1302331680791318.5786102-UTR-P-littoralis_Contig631:128390..130233Pylaiella littoralis U1_48UTRP-littoralis_Contig631 128391..130233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.37.1

>prot_P-littoralis_Contig631.37.1 ID=prot_P-littoralis_Contig631.37.1|Name=mRNA_P-littoralis_Contig631.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=366bp
MTDVEAQISADEALARRIQATEQQRESTPLINYSNLPAAGSMNDSSSGGG
SNDPTEPHHGGGSGQQLGLGGGTIQAGSAEAEPAARRNAHVRMNVVDDGV
RGMNASRFGLLLLTLVNLPLIAAGLVILTLHWQDTEPCDSEHRQKWRLWA
LLSVVRMILITPVVMVRWKLEGQREEDRNQAVNHLSSNMRNSLDIVGLVW
FVIGHMWLLSKGDCETPSDSPIYKLCLVYIIITYIHICLPCILLMLLVPV
LCFCLPCVIRLMGMLQGTQTQKGARQEEIEKLPTVKFGEMQNMQDESCPI
CLVDYEAEDELRNLPCDHAFHKPCADSWLAVNASCPNCRARCFETEDEGG
EEKTAEPIPVGDNLA*
back to top

mRNA from alignment at P-littoralis_Contig631:122853..130233+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.37.1 ID=mRNA_P-littoralis_Contig631.37.1|Name=mRNA_P-littoralis_Contig631.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7381bp|location=Sequence derived from alignment at P-littoralis_Contig631:122853..130233+ (Pylaiella littoralis U1_48)
ATGACAGACGTGGAAGCACAAATATCCGCGGATGAAGCTTTAGCAAGACG
CATTCAGGTATGGAGGCGCGCGGGGTGGTTGCCGCTGGCGGAGTGATGGC
AACTGCAACGTACAAAAATACCGAGCAGCACATCTAAAACAGCTTCAGCT
GGCAATCGTTCGTTTCTCTCTTGTACATTTTGAAAGGTATTTTCGTAGAT
TTTCTTGGATTCCACTTGGCAGTTAGTTCTAGTGCCACTCACAGGGCATG
GCTTCCACTCTTCCGCTCCGAAAAGACTTGGTTTGTCTCAGCGGATGGAT
GGTCATCAACACCAACGCAGGTTCTTTGAGTACCTCGCCCCGGTTCGTCG
TGGCTCGGCCTTACTATTTCGATAATTTTAGTCTTTCGAGATGCAGCAGC
AGACTTGAGAGTCAGCGAGTGTAACACACGGCGGTAATGAGCCAGTGTGA
GAATCAACAACAACAACAACACACCAAGGAGCAACCTGTGACTCACCGAG
TCTCCGAGTCTCCACTTCAACACTTCAACAGAACCCCCGGCCGGTGCAGT
GCTTCGCCCAGCCAGCTCATGGCTGCCGCCCTGCCAGCCCAAGGCTGATG
CCCCTTCCGCTGCTGACCCAACTCCCTTTCCCCCATCTGAAATTGCTTCC
GCAAACAACGCAGGCGACCGAGCAACAACGCGAGAGCACTCCTCTCATCA
ATTACAGTAATCTCCCCGCCGCTGGCAGCATGAACGACAGCAGCAGCGGC
GGCGGCAGCAACGATCCGACCGAACCGCATCATGGCGGCGGGAGTGGACA
GCAGTTGGGACTGGGGGGGGGCACAATCCAGGCGGGCAGCGCAGAAGCAG
AACCGGCGGCCAGGCGAAACGCCCATGTCCGAATGAACGTTGTGGACGAT
GGAGTTCGCGGCATGAACGCTAGCCGGTTTGGTCTGCTGCTCTTGACACT
GGTATAATATACTTCAAATACCAAGCTCTCACTTCGTGCTCCGTATTACA
ATGTGATACACTCCTGTAAACAAGTACCAGGTCTTGCAGTTTGTCCAGTA
GTTTAATTTTTACTTATGCTCTTGCCTTCACCCCGAAGTCCAGACGAGGC
GTCATACATACTTGTACGAGTGTACCTTGTTGTAGTAAAATTTACCATTT
TGGAACAGGAACGGCTGCTCATTTCTACAGTATCCATATGAAAGAACGAA
CGGTTATGTGATACTCCGGAGTATGTACCAACGAAAATGAAGTTTGATGT
TATGTCATACGCCGCTACTGCTGTAGTGTCGAAGAATTTTCTGGTGACGT
CGAGATCGCGATATATGTACGTACTGCTTTGTATTCTTCTAGATTTTTCC
CATCCATGACAAGGAGTGGCAGTGAACCATCTCCGGGTTGTCTTCCCTTA
CAGAAGGCACTTGAAGGAATTTACCATTTCCGTGGTTTTTCACTCTGTAG
ACAACAGGCAGTGATGAGGAGGGCAAGCAAAGTATTTTATGAAACAGAGA
GGTATGCCAGAAATACACATTGGGATTGAGCAATTTGCCCGACGCTTGCT
GGCCCGCCCGGATTCCTTTCTGGCGCTAGAGGAGACGGTGCACCAATTTG
GGGTTATCACGTTGGCAAATGTCACCGTGTCTTTTCGCACGCGCGACAAC
GCCGCTTTCCGACGTCTTCCGGCGGCTGATTCGCCTACCAATACTGTAGC
CCTTGCAAGCTGCAAGCTTTGCGAGAGTCTTCAGCCCACCTTTGAACATA
CGTCAAAACTTCAGTGTGCGCAGTCATGACAGTCCCCCACAACCCTGGAT
AGAAGACACCCGGCGGGGCTGCTGGAAGGGTAGACCGCTGCCTGTGTCAG
GGACAACTATCGTTGCGTCAGATAGGCTGATTGGGTAAAGAGCTTGAGGA
GGAAGTACTATCAGTAGAGCAGCACGACGAAAGTGCCTCTGTCGCGCGCG
CGGTGTGTGAACTGTTTGCCGCTACCCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCGATTCCACGCGCAGCAGCCCCGCTGTCTCGTTACCTCCTTCTT
GTTATTCGCCTCTGCACCTCACGAATGTCCCGAAATTCACCCCCCCAATC
GCTCTACGACAAAAAAACAGGTCAATTTGCCGCTTATCGCAGCTGGTCTC
GTCATCCTCACCCTCCACTGGCAAGACACAGAGCCTTGCGATTCAGAACA
CCGCCAAAAATGGAGATTATGGGCGTTGCTCTCGGTCGTGAGGATGATAC
TTATCACTCCGGTGGTCATGGTGAGTCTCGTCGAGTACGCGCATTTTCGC
TCCTGTCGGTGTCCAGCGAAACTACGCTGCAGAAGCACAGGAGTATGGTG
ACGTGGTAGGTGGTGAGCCATGGCAGTGGGTCGGTGCGACAGCAACCGAA
ACCTTACGCTGCGGTAATGGGGACTGTTCTACCCTGGCATGTGGTACAAA
TAGTGAGACTTAAAGAACACCGCGAACTAAGATCATCCCCCATCTCCTCC
GCGTGTTGAAAGGCGCTACGTGTGCCCTTTCCAAAGCTTTGAGCGCGCTT
GTTTTGACCTTGTCGTGCTTTGCCGGCTCGGTTTGTGGTTATGCTCTCTG
GTGCAGGTGAGATGGAAGCTGGAAGGGCAGAGAGAGGAAGACCGAAACCA
GGCCGTGAACCACTTGTCGAGCAACATGCGCAATTCTCTCGACATTGTTG
GCCTCGTGTGGTTCGTGATCGGGCACATGTGGTTGCTGTCCAAAGGAGAG
TGAGTGAGACAACTTGTCGAAACACAAACGTAGACTCGGTTGCTTCGTCT
GATCCAAGAGGGCATAGCAGTCATGTGGTTTCACAAAGTTTTTTATTTGA
GGCCAAAGGGGCCGCTCTGAAATTGCCAAGCTTTGTGCTGCTTTTGATTT
GGTGATGAACCACGCAGCGTTGGATGCTGTGCCAGAATATCACTGCGTGT
TGTGTGCTTGCTGACATATGGTGTGACTGACAAGCGATGGGTCCGGACCA
ACGACAGCTAGGCGATGAACGTATTTGTAAACCGAGAAAACACTTAGCGT
ATGCGCCAATAGCGTGGAATCCCTATGACGGCGACTCGAACATACATAGG
GCGCGTGTCCCGGTATCTGACTGATTGACTGATGCCTTTGGTTGCTGTAT
TGTGTTAGATTTGTATGTAGCCTACGCTTTCCCTATCGTCGCTCACACAC
ACCCCACCACCACCACCACCACCACCTCCGTGCTGCTGCCCTTACCGCTC
TGGTCGGTCGGCGTGCTCCGGACTGTGGCGGACGCTGGACCACGCCGACT
TGACGTGCTGTGACTGCCTTTTTCTCGGGTTTTATGATCACGCTGTCAGC
TGTGAAACCCCGAGCGATTCACCGATCTACAAGGTGAGCGACCTGGAGCG
CCGTATGCATGCTCTCCTGGGCATTTTTGCGCCTTGCACCGAGCCGTGTG
TGTAGACGCACCGTATTTTATTTGTGTTTTAAACTAAAAATTTGTGGTTT
CACCAGCGCCGTTCAGTCGATCTGCCGCCCGATTTTTCAGTGGGCACCCT
ATTCAGACAACCGTTCCGAACAGCTGGGTCACTCGTTTATTCGCAATCGC
ATGACACGGTCGTGCAGCGTCCTGCGTTTTGTGCTCGTGGAACGTCGCTA
ATCCAAAGCAAAAGAAGAGTCCCATCGCTCACCCAATCGTGCGCTCTTGG
TAGCAGAGTGGCTAGCCTACCGCCCGATTTGTAACCTTCGATAACCTGAC
CCCTTTTTCCTTTCTCGTTTTTGCCCCGTCCTGCTCCCTGGGATCCCCAA
CCGTTCGGCCTCGGCATGTGCTTTTCAATCGTCGGCAACAAAACGTTCAT
CGATCTACAGCTGTGCCTGGTGTACATCATCATCACGTACATCCACATCT
GCCTGCCGTGCATCCTGCTCATGCTCCTGGTCCCTGTTTTATGTTTCTGC
CTACCGTGTGTGATACGATTGATGGGCATGCTGCAAGGCACGCAGACACA
AAAGGGGGCTCGGCAAGAGGAGATCGAGAAGCTTCCGACGGGTGCGTGGC
CCGACGTCGAACGGTTTACACCGCAGCAAAGAAAAACCTCTGCTGTTACA
CGCTGTCTTTTTTATTACTTCTACCTTGTGTATGTATGCGACTCGACGCG
CTATGGTACAGGTGCAACCCATTTGTCACGTACCGGCCATTGAACAAGCC
GTTGAAAGACCCATCAAAATGAATGCCAGAGCGAGCCTCGATGCCCGTGG
CTTGTCGCGCCACTCCCGTCCGACTCGACATTTAGGGCACGCGAATACTA
CAAGAGTTCGACATTACGGGATACGAGTACAATATCCAGATCGAGTACGG
TAGTGCAGGAAAGCATGTCGACAAGTGTCCCTGCACTTTCTGATGCAGCG
CTAGTATCTCTCGCTCCCTCTCGCCCTTCACTGCAACACAAGTATATTTC
ACCACCTCCCGGGATTTCAATGTTGGTGACTTGGCTGGTGACGAAAACGG
TCGGATCCTGCAACGTGAGCAAAATGTTGACGCCCGACCCTCATCGGTGC
CTCCGTTGTCCGCGCAATACATGTTTCCCCCATCGACCAGTCAAATTTGG
TGAAATGCAAAACATGCAAGACGAGTCTTGCCCCATCTGCCTCGTAGACT
ACGAAGCAGAGGACGAGCTGAGGAACCTTCCCTGCGATCACGCCTTCCAC
AAACCGGTGAACCCTGTTCGGATTGTACCGTAGCTTTGTTTTGTCTCCCC
ACCCCCCACCCCCCACCCGCTCTGAACACAGCAAGGTGCCACAAAGCACC
AGGTGTTCCATTCGAGGGGTCGAGTCGGAATTTGTACGAAGCTTGGTTGC
AGAGATGTCGCACTGTTGACTCTGGTGTTTTTTCCTCGGTGATATCGCTT
CCCCGCAAATCTTTCCGTTCGCCCCATGCGGGGAAGAAGCGAGCTCGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCATGCGTGTGGTTTGAATGCTGCGTC
GTTCAACAACGCGACAGAGCTGCCGTGTGAGAATCATGTGTACATCAGCT
TCGGTGTCTTGCGCACGTGTACACATGCATTGTGGTCGTCTCGCGCCCTT
GTTTTCGCCGTAAAAAAGAAAAGTAGACGCTCGGAGAAGGACGGACGCGG
TTGTTCCCTTTCGGCAACACCCGCACTCGTCAGACACTTAACTGTGTTCT
CGTGACGTTGTCTTTCCCATAATTTTGAGCTTTCTCCAAATCGTGGGCCG
TCCTGGTTGCGATTCCACTGGTTGACGCGTCCACTTGTCGTTTTTTAGGC
TCTGCTGTCCTCTTGTAGACATTGCAACTGCAAGGTCAATGTTGTTCAAC
CTTTTCTCCCTCCCCATTCAAATCTTACGTCTGTCTCGCGGGCTTTCGGT
TGTGGTCAGTGCGCGGATAGCTGGTTGGCCGTGAACGCGAGCTGTCCCAA
CTGCCGGGCGCGGTGCTTCGAGACAGAAGACGAAGGGGGGGAGGAGAAAA
CGGCGGAGCCTATTCCCGTCGGAGACAACCTAGCATGATGTGATGCCCGC
ATAGCCTCGCGCATGTGTGATGCTTTCACACCACAACTGGTAACAAAGGA
ACGGCAAGACTGAGAAACTCTCTGCTGGAGAATGACCATCGTAGCCGAGC
AGGCTGCTCGTGGGTGGAAAAACGATGGCTCGTGCTGTGGCCACAGCCTT
TTAGTGAAGGGAATGGAAGGGTGTCGTCGTCCGAGGCCGAACGTGTGCGG
CGAACGACGCGGATTGACGATCAGGGAGGAGCGTAGCCCGGGGCGAAAGA
GGGGAGACGTGGCGGCATGGTGTGGTGTGTTTTGCACCCGTCGCTGCAAA
GGATGGCGTTTTTGATGCCGCCGGCGCCAACTGGAGTATTATTCGGAGAC
GGCAGGATTCGTTCCTGGACGCGTGGGCACAGGGGGCAACGGGAGCAAGC
TCTTTGGGAGGGAGAGCAACTGGCTTTTCGCTGCGAAGCGGAAGGGTGAC
GCATGCCGCCGCAGGAGGGGGCAGTTCCGTTGGCGTTGTTTGCCAGAAGC
CGAAAGCACAAAGCATACTACGAAGTATGTTCATTGATACAATTGTTGAA
CTGGCCCGTGTCAAAAATTATTATTTTACTATTTTGGTGTTCAACCGCCG
CTGCGTACAAGCACGGTCGGGAGCTTTGCCGGCCTGCTTTTCTGTCGTAG
TTTCCTGCAGTTTCGACGAGAAACGCACTGCATCTCGGGCAAAGCAAATA
ACGGCGGCACGCAAGTTACCCGCGCCAAATCGGCATTTTGTGTTGTTTTA
CCTATTTTCGATGCGCCTTTACGCTGTTGACGTCCTGTTGGGTTTCGGCG
TGGCCTAGAGCCATTCCTCGTGTATATTGTCGTCGTGTCATGGTCTCTGT
CCACTGGTTGACTTAGAGCGGTGAGAAGCCTTGTTTGTATTTTGTTGTGC
ATCCCACCGATCTCCCTTCTGGTTTTGGTTCGGGGCCTTTATGCGACATG
GAGCTGGACGGCGAGGGCGGTCAACCTGGGTTGACAAGGTGAAGAGGAGT
ATGTTACGACCGCATGGCGCATGTTCACATCTACATATTCCGGCCGTCAG
TATGAAAAGGATAGGAAGGCGTCTGTAGTTTTGTTAACGGACTCATGAGA
GGGCTGCACCCGGTATATCTGGATGTATATTCGTGTGGTGATAGGAACTA
TACTCCTTCTTTGCATTCAACATGATATCATCAAGTTTCTTGGTTCCGTG
TGGGTATGTATGCAGGGGTTTGGCTGTTGTCGTTATTTCACGTTTATTAT
TTCTCTGTTATCAAGCTTTCCGATATTTCAAGGCCACGCTGGGGGGGGCG
CCGTCCCGATATCGCGGGGTTCCGTGGTCACCTTTCTGGTTTCAACGGTC
TTATTCCCTTCAACTTCTAGATAAAAAATCCTTTGCGGTGCCCCCCCCTG
ATAGCTCTATACTCCACAGCACCATTTCCGATGTTTGCCCTGTGAGGCAA
AAATTCCGGATCTTTTTGCAGAAAGCACCTTGGCTCGTGATCCTCAGTCG
ATCAAAACTGCTGTGCTTTGTGCCAGTTTAGGCCTTGTAGCGCGAGATCG
AGATGAACGTTTTGAGCATCATCTCCCCGGCCGGATAGAAATTAGTTGGT
GAAATATTCCAGAAAACTTCGCTTCAGTTTACGGCAGTCTGCAGTGCAAG
TTCGTCACAACCAATCACTCGCGAAAGTGCAACAGCCTACGGATGTGGTG
GGTGAGGGGCATCCCATGCCTAGGCAGCAGCAGCAGCCAGCCAAACGGTT
CTTGATGTATGCAGCGGCCCGAAATCGCACCGCACTAAGAGATCAATTGG
GCGCGACGATACGAGACTGCCGTCGTCCTCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig631:122853..130233+

>mRNA_P-littoralis_Contig631.37.1 ID=mRNA_P-littoralis_Contig631.37.1|Name=mRNA_P-littoralis_Contig631.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1098bp|location=Sequence derived from alignment at P-littoralis_Contig631:122853..130233+ (Pylaiella littoralis U1_48)
ATGACAGACGTGGAAGCACAAATATCCGCGGATGAAGCTTTAGCAAGACG
CATTCAGGCGACCGAGCAACAACGCGAGAGCACTCCTCTCATCAATTACA
GTAATCTCCCCGCCGCTGGCAGCATGAACGACAGCAGCAGCGGCGGCGGC
AGCAACGATCCGACCGAACCGCATCATGGCGGCGGGAGTGGACAGCAGTT
GGGACTGGGGGGGGGCACAATCCAGGCGGGCAGCGCAGAAGCAGAACCGG
CGGCCAGGCGAAACGCCCATGTCCGAATGAACGTTGTGGACGATGGAGTT
CGCGGCATGAACGCTAGCCGGTTTGGTCTGCTGCTCTTGACACTGGTCAA
TTTGCCGCTTATCGCAGCTGGTCTCGTCATCCTCACCCTCCACTGGCAAG
ACACAGAGCCTTGCGATTCAGAACACCGCCAAAAATGGAGATTATGGGCG
TTGCTCTCGGTCGTGAGGATGATACTTATCACTCCGGTGGTCATGGTGAG
ATGGAAGCTGGAAGGGCAGAGAGAGGAAGACCGAAACCAGGCCGTGAACC
ACTTGTCGAGCAACATGCGCAATTCTCTCGACATTGTTGGCCTCGTGTGG
TTCGTGATCGGGCACATGTGGTTGCTGTCCAAAGGAGACTGTGAAACCCC
GAGCGATTCACCGATCTACAAGCTGTGCCTGGTGTACATCATCATCACGT
ACATCCACATCTGCCTGCCGTGCATCCTGCTCATGCTCCTGGTCCCTGTT
TTATGTTTCTGCCTACCGTGTGTGATACGATTGATGGGCATGCTGCAAGG
CACGCAGACACAAAAGGGGGCTCGGCAAGAGGAGATCGAGAAGCTTCCGA
CGGTCAAATTTGGTGAAATGCAAAACATGCAAGACGAGTCTTGCCCCATC
TGCCTCGTAGACTACGAAGCAGAGGACGAGCTGAGGAACCTTCCCTGCGA
TCACGCCTTCCACAAACCGTGCGCGGATAGCTGGTTGGCCGTGAACGCGA
GCTGTCCCAACTGCCGGGCGCGGTGCTTCGAGACAGAAGACGAAGGGGGG
GAGGAGAAAACGGCGGAGCCTATTCCCGTCGGAGACAACCTAGCATGA
back to top