mRNA_P-littoralis_Contig631.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.34.1
Unique NamemRNA_P-littoralis_Contig631.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig631.34.1 vs. uniprot
Match: A0A6H5KYT9_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYT9_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.880e-33
Identity = 63/104 (60.58%), Postives = 81/104 (77.88%), Query Frame = 1
Query:    1 MDDYEDDEEVDAENDRSTREIKRRRIFERKDYKTSCWWQEL---QDEDLLDHTSRAARRFRCYFRIPYCFFVELVALVKERDWFPTGKKDVAGRASIPVELKVS 303
            M+D+EDD E+D E+D ++RE+KRRR++ RKDY  S WWQEL   ++    DHT+R ARRFR  FR+PY FFV LV LV++RDWFPTG+ DV GR ++PVELKVS
Sbjct:   41 MEDFEDDLELDTEDDEASREVKRRRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVS 144          
BLAST of mRNA_P-littoralis_Contig631.34.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.340e-30
Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 1
Query:    1 MDDYEDDEEVDAENDRSTREIKRRRIFERKDYKTSCWWQEL---QDEDLLDHTSRAARRFRCYFRIPYCFFVELVALVKERDWFPTGKKDVAGRASIPVELKV 300
            M+D+EDD E+D E+D ++RE+KRRR++ RKDY  S WWQEL   ++    DHT+R ARRFR  FR+PY FFV LV LV++RDWFPTG+ DV GR ++PVELKV
Sbjct:   73 MEDFEDDLELDTEDDEASREVKRRRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKV 175          
BLAST of mRNA_P-littoralis_Contig631.34.1 vs. uniprot
Match: A0A6H5K671_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K671_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.230e-29
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 1
Query:    1 MDDYEDDEEVDAENDRSTREIKRRRIFERKDYKTSCWWQEL---QDEDLLDHTSRAARRFRCYFRIPYCFFVELVALVKERDWFPTGKKDVAGRASIPVELKV 300
            M+D+EDD E+D E+D ++RE+KRRR++ RKDY  S WWQEL   ++    DHT+R ARRFR  FR+PY FFV LV LV++RDWFPTG+ DV GR ++PVELK+
Sbjct:  290 MEDFEDDLELDTEDDEASREVKRRRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKI 392          
BLAST of mRNA_P-littoralis_Contig631.34.1 vs. uniprot
Match: A0A6H5JQR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQR5_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.450e-25
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 1
Query:   37 ENDRSTREIKRRRIFERKDYKTSCW---WQELQD---EDLLDHTSRAARRFRCYFRIPYCFFVELVALVKERDWFPTGKKDVAGRASIPVELKVS 303
            E +   REIKRRR++ RKDY  S W    QEL+D   + ++  TSR ARRFR  FR+PY FFVELVALVK+RDWFPTGK+D +GR  IPV+LKV+
Sbjct:   66 EEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDLEVDGIVGPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVN 160          
BLAST of mRNA_P-littoralis_Contig631.34.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.870e-24
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   37 ENDRSTREIKRRRIFERKDYKTSCW---WQELQD---EDLLDHTSRAARRFRCYFRIPYCFFVELVALVKERDWFPTGKKDVAGRASIPVELKV 300
            E +   REIKRRR++ RKDY  S W    QEL+D   + ++D TSR ARRFR  FR+PY FFVELVALVK+RDWFPTGK+D +GR  IPV+LKV
Sbjct:   66 EEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKV 159          
BLAST of mRNA_P-littoralis_Contig631.34.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.510e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   70 RRIFERKDYKTSCWWQELQDEDLLDHTSRAARRFRCYFRIPYCFFVELVALVKERDWFPTGKKDVAGRASIPVELKVSPY 309
            R++ ER+D+ TS WW +LQ+ DLLDHT+ AA+ FR  FR+P+ FF+ELV + + + WF   +KD  GR  IP+ELK+S Y
Sbjct:   65 RQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSY 144          
BLAST of mRNA_P-littoralis_Contig631.34.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.120e-19
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   70 RRIFERKDYKTSCWWQELQDEDLLDHTSRAARRFRCYFRIPYCFFVELVALVKERDWFPTGKKDVAGRASIPVELKV 300
            RR+ +R+D++TS WW++LQD DL DHT+ AA+ FR  FR+PY FF ELV L + + WF  G+KD A R  IP+ELKV
Sbjct:   63 RRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKV 139          
BLAST of mRNA_P-littoralis_Contig631.34.1 vs. uniprot
Match: A0A835ZAS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAS0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.110e-17
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   70 RRIFERKDYKTSCWWQELQDE-DLLDHTSRAARRFRCYFRIPYCFFVELVALVKERDWFPTGKKDVAGRASIPVELKV 300
            RR++ER DY+ + W   L +E  LLD TSR A++FR  FR+PY  F ELVALV+E+ W P    DVAGR  IP+ELKV
Sbjct:   39 RRVYERPDYRRTAWMTMLDNEAQLLDPTSREAKKFRRRFRLPYPMFKELVALVREKGWLPCADADVAGRPCIPLELKV 116          
BLAST of mRNA_P-littoralis_Contig631.34.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 7.880e-17
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   70 RRIFERKDYKTSCWWQELQDEDLLDHTSRAARRFRCYFRIPYCFFVELVALVKERDWFPTGKKDVAGRASIPVELKV 300
            RR+ +R+D++TS WW++LQ  DL DHT+ AA  FR  FR+PY FF  LV L + + WF  G+KD A R  IP+ELK+
Sbjct:   63 RRVTQRRDWRTSAWWEQLQHVDLADHTTAAATVFRGRFRVPYPFFQNLVKLSRAKRWFSPGEKDTANREGIPLELKL 139          
BLAST of mRNA_P-littoralis_Contig631.34.1 vs. uniprot
Match: A0A6H5KLY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.840e-16
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   82 ERKDYKTSCWWQELQDEDLLDHTSRAARRFRCYFRIPYCFFVELVALVKERDWFPTGKKDVAGRASIPVELK 297
            +RKD +T  W Q L+D+DL D TS  A++FR  FR+PY FF+ LVALVK ++WF T  KD  GRAS PVE K
Sbjct:   87 QRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAGKDAIGRASHPVEHK 158          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KYT9_9PHAE2.880e-3360.58Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE5.340e-3060.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K671_9PHAE2.230e-2959.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQR5_9PHAE2.450e-2560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE6.870e-2461.70Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE1.510e-1951.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE2.120e-1955.84DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A835ZAS0_9STRA1.110e-1755.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KEB6_9PHAE7.880e-1751.95DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KLY4_9PHAE1.840e-1656.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:93301..93897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size597
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791318.193141-UTR-P-littoralis_Contig631:93300..935761680791318.193141-UTR-P-littoralis_Contig631:93300..93576Pylaiella littoralis U1_48UTRP-littoralis_Contig631 93301..93576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791318.2039204-CDS-P-littoralis_Contig631:93576..938971680791318.2039204-CDS-P-littoralis_Contig631:93576..93897Pylaiella littoralis U1_48CDSP-littoralis_Contig631 93577..93897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.34.1prot_P-littoralis_Contig631.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 93577..93897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.34.1

>prot_P-littoralis_Contig631.34.1 ID=prot_P-littoralis_Contig631.34.1|Name=mRNA_P-littoralis_Contig631.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MDDYEDDEEVDAENDRSTREIKRRRIFERKDYKTSCWWQELQDEDLLDHT
SRAARRFRCYFRIPYCFFVELVALVKERDWFPTGKKDVAGRASIPVELKV
SPYFLS*
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mRNA from alignment at P-littoralis_Contig631:93301..93897-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.34.1 ID=mRNA_P-littoralis_Contig631.34.1|Name=mRNA_P-littoralis_Contig631.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=597bp|location=Sequence derived from alignment at P-littoralis_Contig631:93301..93897- (Pylaiella littoralis U1_48)
ATGGACGACTACGAAGACGATGAGGAGGTGGATGCAGAAAACGATAGGTC CACGAGGGAGATCAAAAGGCGCCGCATCTTTGAACGAAAGGACTATAAAA CATCTTGTTGGTGGCAAGAGCTGCAGGACGAAGACCTGTTGGACCACACG AGCAGGGCTGCCCGGCGTTTCCGCTGTTACTTTCGCATTCCGTACTGCTT CTTCGTGGAGCTGGTGGCGCTGGTGAAGGAGAGGGACTGGTTTCCAACGG GGAAGAAGGACGTAGCAGGTCGTGCAAGCATCCCAGTGGAGCTGAAGGTC AGCCCTTATTTTCTATCATGATGTTTAAAACTAAGATGATTTTATACAGC AGTAGATGTTCCCGACTTTTGGTGGTATATGCTGCGAAGTACTTCGTTAT ACGAAGAACACGAAGAAAAACACACAGCAGTACTGCTTGCCTGCCCATGC TTCTCTCGGTGTATTGAAGCGTTTTCAAGCATCCCAGTGGAGCTGAATGT CAGCCCTCGTTTCCTATCATGTTGTAGTTCCAAACGAAGATGATTTTAAG GCCACCGGGGAATAGGGTGCAAACAGCTCGCAGACTTTCGACAAACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:93301..93897-

>mRNA_P-littoralis_Contig631.34.1 ID=mRNA_P-littoralis_Contig631.34.1|Name=mRNA_P-littoralis_Contig631.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig631:93301..93897- (Pylaiella littoralis U1_48)
ATGGACGACTACGAAGACGATGAGGAGGTGGATGCAGAAAACGATAGGTC
CACGAGGGAGATCAAAAGGCGCCGCATCTTTGAACGAAAGGACTATAAAA
CATCTTGTTGGTGGCAAGAGCTGCAGGACGAAGACCTGTTGGACCACACG
AGCAGGGCTGCCCGGCGTTTCCGCTGTTACTTTCGCATTCCGTACTGCTT
CTTCGTGGAGCTGGTGGCGCTGGTGAAGGAGAGGGACTGGTTTCCAACGG
GGAAGAAGGACGTAGCAGGTCGTGCAAGCATCCCAGTGGAGCTGAAGGTC
AGCCCTTATTTTCTATCATGA
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