mRNA_P-littoralis_Contig631.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.28.1
Unique NamemRNA_P-littoralis_Contig631.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig631.28.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 3.660e-79
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:    1 ANAHENSLSRLGNGSKVDKGRTFSIEDWKDKCKFLADLVEENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGVLAKAGVSTEDLERFSCALHILDSLTSACLR 390
            ANAHENSLSRLGNGSKVDKGRTFSIEDWKDKCKFLADLV+ENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGVLAKAGVSTEDLERFSCALHILDSLTSACLR
Sbjct: 1146 ANAHENSLSRLGNGSKVDKGRTFSIEDWKDKCKFLADLVDENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGVLAKAGVSTEDLERFSCALHILDSLTSACLR 1275
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BLAST of mRNA_P-littoralis_Contig631.28.1 vs. uniprot
Match: A0A6H5KG30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG30_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.960e-64
Identity = 111/139 (79.86%), Postives = 112/139 (80.58%), Query Frame = 1 
Query:   55 KGRTFSIEDWKDKCKFLADLVEENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGVLAKAG---------------------------VSTEDLERFSCALHILDSLTSACLR 390
            KGRTFSIEDWKDKCKFLADLVEENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYP+KYEEQIDEVVGVLAKAG                           VSTEDLERFSCALHILDSLTSACLR
Sbjct:   10 KGRTFSIEDWKDKCKFLADLVEENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPDKYEEQIDEVVGVLAKAGXXXXXXXXXXXXXXXXXXXXXXXXXARVSTEDLERFSCALHILDSLTSACLR 148
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BLAST of mRNA_P-littoralis_Contig631.28.1 vs. uniprot
Match: A0A6H5JKP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP3_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.170e-24
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 ANAHENSLSRLGNGSKVDKGRTFSIEDWKDKCKFLADLVEENGIKPIMAKIGDAVRRKEVIEM 189
            A AHENSL+RLG GSK + GRTFS+E+W+DKCKFLADLVEENGI PIMAKI DA RR++V+ M
Sbjct:  110 AAAHENSLARLGRGSKQNAGRTFSVEEWEDKCKFLADLVEENGIGPIMAKIEDAARREKVVAM 172
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BLAST of mRNA_P-littoralis_Contig631.28.1 vs. uniprot
Match: A0A6H5L2T9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.870e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 ANAHENSLSRLGNGSKVDKGRTFSIEDWKDKCKFLADLV 117
            ANAHENSLSRLGNGSKVDKGRTFSIEDWKDKCKFLADLV
Sbjct:  377 ANAHENSLSRLGNGSKVDKGRTFSIEDWKDKCKFLADLV 415
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE3.660e-7999.23PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KG30_9PHAE1.960e-6479.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKP3_9PHAE2.170e-2474.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2T9_9PHAE7.870e-17100.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:62770..63160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size393
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791318.0794759-CDS-P-littoralis_Contig631:62770..631601680791318.0794759-CDS-P-littoralis_Contig631:62770..63160Pylaiella littoralis U1_48CDSP-littoralis_Contig631 62771..63160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.28.1prot_P-littoralis_Contig631.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 62771..63160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.28.1

>prot_P-littoralis_Contig631.28.1 ID=prot_P-littoralis_Contig631.28.1|Name=mRNA_P-littoralis_Contig631.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
ANAHENSLSRLGNGSKVDKGRTFSIEDWKDKCKFLADLVEENGIKPIMAK
IGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEEQIDEVVGV
LAKAGVSTEDLERFSCALHILDSLTSACLR
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mRNA from alignment at P-littoralis_Contig631:62770..63160-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.28.1 ID=mRNA_P-littoralis_Contig631.28.1|Name=mRNA_P-littoralis_Contig631.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=391bp|location=Sequence derived from alignment at P-littoralis_Contig631:62770..63160- (Pylaiella littoralis U1_48)
GCCAACGCTCATGAGAACAGCCTATCTCGGCTGGGAAACGGGAGCAAGGT
GGATAAAGGCCGAACTTTCAGTATCGAGGACTGGAAAGACAAGTGCAAGT
TTTTGGCCGACTTGGTGGAGGAGAACGGCATCAAGCCCATCATGGCCAAA
ATCGGGGACGCCGTTCGGCGGAAGGAAGTGATCGAGATGTGTCTGGACGT
GCTTCACGACGGCGGGGGGGCTACCATCGGGAAGCGCGATGACGAGAGGC
ACCTGTATCCCGAGAAGTACGAGGAACAGATCGACGAGGTGGTCGGCGTT
TTGGCGAAGGCGGGGGTTTCCACCGAAGACCTGGAGCGGTTCAGCTGCGC
CCTCCACATCCTCGACTCGCTCACGTCAGCTTGCCTTCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:62770..63160-

>mRNA_P-littoralis_Contig631.28.1 ID=mRNA_P-littoralis_Contig631.28.1|Name=mRNA_P-littoralis_Contig631.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig631:62770..63160- (Pylaiella littoralis U1_48)
GCCAACGCTCATGAGAACAGCCTATCTCGGCTGGGAAACGGGAGCAAGGT
GGATAAAGGCCGAACTTTCAGTATCGAGGACTGGAAAGACAAGTGCAAGT
TTTTGGCCGACTTGGTGGAGGAGAACGGCATCAAGCCCATCATGGCCAAA
ATCGGGGACGCCGTTCGGCGGAAGGAAGTGATCGAGATGTGTCTGGACGT
GCTTCACGACGGCGGGGGGGCTACCATCGGGAAGCGCGATGACGAGAGGC
ACCTGTATCCCGAGAAGTACGAGGAACAGATCGACGAGGTGGTCGGCGTT
TTGGCGAAGGCGGGGGTTTCCACCGAAGACCTGGAGCGGTTCAGCTGCGC
CCTCCACATCCTCGACTCGCTCACGTCAGCTTGCCTTCGG
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