mRNA_P-littoralis_Contig631.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.20.1
Unique NamemRNA_P-littoralis_Contig631.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig631.20.1 vs. uniprot
Match: D7G448_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G448_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.410e-28
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 GKCCPPAPLENKGVMFVVYRRLNAGRSLLLATLYDGEDTLVGVGLFFCLKYGGRYIP 171
            GK  PPAPL+NKGVMFVVYRRLNAGRSLLLATLYDGEDT VGVGL FC KYGGRYIP
Sbjct:   15 GKSFPPAPLKNKGVMFVVYRRLNAGRSLLLATLYDGEDTSVGVGLVFCSKYGGRYIP 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G448_ECTSI1.410e-2889.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:45214..45616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size403
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size132
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.9728117-UTR-P-littoralis_Contig631:45213..452551680791317.9728117-UTR-P-littoralis_Contig631:45213..45255Pylaiella littoralis U1_48UTRP-littoralis_Contig631 45214..45255 +
1680791317.9959314-UTR-P-littoralis_Contig631:45387..456161680791317.9959314-UTR-P-littoralis_Contig631:45387..45616Pylaiella littoralis U1_48UTRP-littoralis_Contig631 45388..45616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.983342-CDS-P-littoralis_Contig631:45255..453871680791317.983342-CDS-P-littoralis_Contig631:45255..45387Pylaiella littoralis U1_48CDSP-littoralis_Contig631 45256..45387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.20.1prot_P-littoralis_Contig631.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 45256..45387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.20.1

>prot_P-littoralis_Contig631.20.1 ID=prot_P-littoralis_Contig631.20.1|Name=mRNA_P-littoralis_Contig631.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=44bp
MFVVYRRLNAGRSLLLATLYDGEDTLVGVGLFFCLKYGGRYIP*
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mRNA from alignment at P-littoralis_Contig631:45214..45616+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.20.1 ID=mRNA_P-littoralis_Contig631.20.1|Name=mRNA_P-littoralis_Contig631.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=403bp|location=Sequence derived from alignment at P-littoralis_Contig631:45214..45616+ (Pylaiella littoralis U1_48)
GGAAAATGTTGCCCCCCGGCTCCCCTCGAGAACAAGGGCGTGATGTTCGT
GGTGTATCGGCGCCTAAACGCCGGTCGCTCACTTTTGTTGGCCACTTTGT
ACGACGGGGAGGATACTTTGGTGGGGGTGGGCTTGTTTTTTTGTTTGAAG
TACGGAGGAAGATACATCCCTTGAAATATCTGTCTGCGTGGTCGTGCAAA
ATTGGATAGCATTGTTCGAGATTAACTGACACAGTTTTTAGGTGTCGTTG
ACGTCCTCGTTTCGAGTTGATAGCGGTAAAAATAGCTGAAGTCGAACCCC
GTCGTGATACGCACAACAACACAGCATGGCGTATTGTCCGCGGGAAAAAT
CAGAACCTATATCGAGTGGGATGCCACAAGAGCTTCGACCCCGCACCTAG
TGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:45214..45616+

>mRNA_P-littoralis_Contig631.20.1 ID=mRNA_P-littoralis_Contig631.20.1|Name=mRNA_P-littoralis_Contig631.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=132bp|location=Sequence derived from alignment at P-littoralis_Contig631:45214..45616+ (Pylaiella littoralis U1_48)
ATGTTCGTGGTGTATCGGCGCCTAAACGCCGGTCGCTCACTTTTGTTGGC
CACTTTGTACGACGGGGAGGATACTTTGGTGGGGGTGGGCTTGTTTTTTT
GTTTGAAGTACGGAGGAAGATACATCCCTTGA
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