mRNA_P-littoralis_Contig631.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.17.1
Unique NamemRNA_P-littoralis_Contig631.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig631.17.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 1.820e-68
Identity = 204/217 (94.01%), Postives = 208/217 (95.85%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRGCGDTNQTPQMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLFSAYGSLPLYMAVYNGHLKVVRELVHWYGTDRCTNDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGSADPTIATTDIDR CG TNQTP MVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NPL SAYGSLPL MAVY+GHL+VVRELVHWYGTDRCT+DGGALALATAASRKHVDIV FLC+AGV
Sbjct:  422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGV 638
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BLAST of mRNA_P-littoralis_Contig631.17.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 3.580e-67
Identity = 181/217 (83.41%), Postives = 186/217 (85.71%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRGCGDTNQTPQMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLFSAYGSLPLYMAVYNGHLKVVRELVHWYGTDRCTNDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGS +  +ATTDIDR CGDTN TP MVASVIGSSRVV+DLLRQGASVSVADSDGYTALHH+VYH+HLAVS               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     NPL SAYGSLPL  AVYNGHLKVV ELVHWYGTDRCTNDGG LALATAASRKHVDIVTFLCDAGV
Sbjct:    1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGV 217
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BLAST of mRNA_P-littoralis_Contig631.17.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 7.400e-58
Identity = 195/218 (89.45%), Postives = 197/218 (90.37%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRGCGDTNQTPQMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLFSAYGSLPLY-MAVYNGHLKVVRELVHWYGTDRCTNDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGSADPTIATTDIDR CGDTNQTP MVASVIG SRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    SAYGSLPLY M          RELV+WYG DRCT+DGGALAL TAASRKHVDIVTFL DAGV
Sbjct:    7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYGSLPLYIMXXXXXXXXXXRELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGV 224
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BLAST of mRNA_P-littoralis_Contig631.17.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.870e-43
Identity = 144/209 (68.90%), Postives = 148/209 (70.81%), Query Frame = 1 
Query:   25 SGSADPTIATTDIDRGCGDTNQTPQMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLFSAYGSLPLYMAVYNGHLKVVRELVHWYGTDRCTNDGGALALATAASRKHVDIVTFLCDAGV 651
            SGS +  IATTDIDR CGDTNQTP MVASVIGSSRVVRDLLRQGASVS+ADSDGY ALHHAVYHKHLAVSK                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPL SA                   ELV+WYGTD CT+DGGALALATAASR  VDIVTFLCDAGV
Sbjct:  399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 607
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BLAST of mRNA_P-littoralis_Contig631.17.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 5.000e-37
Identity = 73/79 (92.41%), Postives = 74/79 (93.67%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRGCGDTNQTPQMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 237
            MPSTLSKASGS DPTIATT IDRGCGDTNQTP MVASVIGSSRVVRDLLRQGASVSVADSDG TALHH+VYH HLAVSK
Sbjct:    1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSK 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JL58_9PHAE1.820e-6894.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE3.580e-6783.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE7.400e-5889.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE1.870e-4368.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI5.000e-3792.41EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:41212..41862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LH66
Model size653
Max annot lvl2880.D8LH66|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.2e-38
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size651
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.8950806-CDS-P-littoralis_Contig631:41211..418621680791317.8950806-CDS-P-littoralis_Contig631:41211..41862Pylaiella littoralis U1_48CDSP-littoralis_Contig631 41212..41862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.17.1prot_P-littoralis_Contig631.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 41212..41862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.17.1

>prot_P-littoralis_Contig631.17.1 ID=prot_P-littoralis_Contig631.17.1|Name=mRNA_P-littoralis_Contig631.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=217bp
MPSTLSKASGSADPTIATTDIDRGCGDTNQTPQMVASVIGSSRVVRDLLR
QGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPGGIDTPLH
MAATKGFCQGMVVLMDAGANVNSRLDDGATPLLFAAKDGRLEGVKILLRA
NANPLFSAYGSLPLYMAVYNGHLKVVRELVHWYGTDRCTNDGGALALATA
ASRKHVDIVTFLCDAGV
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mRNA from alignment at P-littoralis_Contig631:41212..41862-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.17.1 ID=mRNA_P-littoralis_Contig631.17.1|Name=mRNA_P-littoralis_Contig631.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=651bp|location=Sequence derived from alignment at P-littoralis_Contig631:41212..41862- (Pylaiella littoralis U1_48)
ATGCCATCAACTCTGAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTGC
TACGACCGACATCGACCGAGGCTGCGGTGATACGAACCAGACACCGCAGA
TGGTGGCCTCCGTGATCGGTTCCTCGCGCGTTGTCAGAGACCTTCTGCGG
CAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA
CCACGCGGTTTATCACAAACACCTGGCCGTGAGCAAAGACCTGATCGAGG
CGGGAGCGGACCTTGAAGCGAGGCCTGGTGGCATAGATACACCACTTCAC
ATGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATGGACGC
CGGCGCGAACGTGAACAGCAGGCTCGACGACGGAGCAACACCTCTATTGT
TCGCGGCAAAGGACGGACGGCTGGAAGGGGTGAAAATTCTCCTTCGAGCG
AACGCGAATCCGCTCTTTTCAGCGTACGGAAGTCTCCCGTTATATATGGC
GGTTTACAATGGACATCTGAAAGTGGTCCGCGAGCTCGTGCATTGGTACG
GAACCGATCGCTGTACAAACGACGGCGGCGCACTGGCTCTCGCAACGGCC
GCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGT
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:41212..41862-

>mRNA_P-littoralis_Contig631.17.1 ID=mRNA_P-littoralis_Contig631.17.1|Name=mRNA_P-littoralis_Contig631.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=651bp|location=Sequence derived from alignment at P-littoralis_Contig631:41212..41862- (Pylaiella littoralis U1_48)
ATGCCATCAACTCTGAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTGC
TACGACCGACATCGACCGAGGCTGCGGTGATACGAACCAGACACCGCAGA
TGGTGGCCTCCGTGATCGGTTCCTCGCGCGTTGTCAGAGACCTTCTGCGG
CAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA
CCACGCGGTTTATCACAAACACCTGGCCGTGAGCAAAGACCTGATCGAGG
CGGGAGCGGACCTTGAAGCGAGGCCTGGTGGCATAGATACACCACTTCAC
ATGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATGGACGC
CGGCGCGAACGTGAACAGCAGGCTCGACGACGGAGCAACACCTCTATTGT
TCGCGGCAAAGGACGGACGGCTGGAAGGGGTGAAAATTCTCCTTCGAGCG
AACGCGAATCCGCTCTTTTCAGCGTACGGAAGTCTCCCGTTATATATGGC
GGTTTACAATGGACATCTGAAAGTGGTCCGCGAGCTCGTGCATTGGTACG
GAACCGATCGCTGTACAAACGACGGCGGCGCACTGGCTCTCGCAACGGCC
GCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGT
G
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