mRNA_P-littoralis_Contig631.13.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 214 bits (545), Expect = 2.650e-65 Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 3
Query: 378 DLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSRKGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSNWSGKKPKLVYTAPP 812
DLL LPG DVFYKFGLKLYSL QN++FRARKGDK R+CCSRKGWI VP++EAYD ILQILV+KT+EAV MF I + DHF+ H++SIL +KDS VPEQRKLYERRRNKVLNNIAV+VTDNL R+ WS KK KLVY A P
Sbjct: 127 DLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALP 271
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 210 bits (535), Expect = 1.370e-62 Identity = 104/145 (71.72%), Postives = 118/145 (81.38%), Query Frame = 3
Query: 378 DLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSRKGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSNWSGKKPKLVYTAPP 812
DLL LPG DVFYKFGLKLYSL QN++FRARKGDK R+CCSRKGWI VP++EAYD ILQILV+KT+EAV MF I + DHF+ +++SIL KDS VPEQRKLYERRRNKVLNNIAV+VTDNL R+ WS KK KLVY A P
Sbjct: 225 DLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALP 369
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE) HSP 1 Score: 178 bits (451), Expect = 1.950e-51 Identity = 88/126 (69.84%), Postives = 100/126 (79.37%), Query Frame = 1
Query: 1 MALRDRKLRVKANPSCFDLSTVLEPLRTECPNLIYLGIWYYVGSVYAYAQSAERMSDIMLTKALQDHMVITNIAPYSTPRGELQEEWRSKPVRANKAIVAKADTTAVFVHPLGKESLQHITSKFIA 378
MALR+RKL V+AN SCFDL T+LE +RT+CP LIYLGIWY G VY YAQ AERMSDIML KAL+ H+V T+I+ + P E QEEWR+KPV NK I KA+TTAVFVHPLGKESLQH TS FIA
Sbjct: 1 MALRNRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKALEGHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIA 126
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE) HSP 1 Score: 142 bits (359), Expect = 1.660e-38 Identity = 82/131 (62.60%), Postives = 86/131 (65.65%), Query Frame = 3
Query: 378 DLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSRKGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSN 770
DLLNTL G DVFYKFG+KLY LEQNV+FRARKGDK+V SGV+ CHIDHFEK AESILD KDS VPEQRKLYER RNKVLNNIAVNVTDNLSRLSN
Sbjct: 102 DLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRLSN 196
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 127 bits (320), Expect = 5.930e-30 Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 3
Query: 378 DLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSRKGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSNWSGKKPKL 794
DLL VF+KFGLKLYSL QNV+FR RK VR+ K WI V K+EAYD IL +LV+KT EAV M+ +S ++HF +L+ +DS VPE++KLYE+RRNK L+ IAV+V LS+L W GK+ L
Sbjct: 129 DLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKRVTL 266
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 128 bits (321), Expect = 1.090e-29 Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 3
Query: 378 DLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSRKGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSNWSGKKPKL 794
DLL VF+KFGLKLYSL QNV+FR RK VR+ K WI V K+EAYD IL +LV+KT EAV M+ +S ++HF +L+ +DSPVPE++KLYE+ RNK L+ IAV+V LS+L W GK+ L
Sbjct: 2257 DLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKRVTL 2394
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 1.240e-6 Identity = 43/147 (29.25%), Postives = 72/147 (48.98%), Query Frame = 3
Query: 366 QVHRDLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSR----KGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSNWSGKKPKL 794
++ ++LL GPDV ++FG KLY+LE+N++F+ D K R W+ K + +L+ L D +EAV+ + I +++FE I D + E +Y + N +A N+ + L R+ +GKK KL
Sbjct: 146 ELIQELLAGHHGPDVIFRFGAKLYALEENMNFKT---DVKSGFISGRLEEDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFD--LQEDMPVYRKFIRDGFNVLASNMAEKLRRIERDTGKKLKL 287 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig631.13.1 >prot_P-littoralis_Contig631.13.1 ID=prot_P-littoralis_Contig631.13.1|Name=mRNA_P-littoralis_Contig631.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp MALRDRKLRVKANPSCFDLSTVLEPLRTECPNLIYLGIWYYVGSVYAYAQback to top mRNA from alignment at P-littoralis_Contig631:28959..29770+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig631.13.1 ID=mRNA_P-littoralis_Contig631.13.1|Name=mRNA_P-littoralis_Contig631.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=812bp|location=Sequence derived from alignment at P-littoralis_Contig631:28959..29770+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig631:28959..29770+ >mRNA_P-littoralis_Contig631.13.1 ID=mRNA_P-littoralis_Contig631.13.1|Name=mRNA_P-littoralis_Contig631.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig631:28959..29770+ (Pylaiella littoralis U1_48)back to top |