mRNA_P-littoralis_Contig631.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.11.1
Unique NamemRNA_P-littoralis_Contig631.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig631.11.1 vs. uniprot
Match: D7FHU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU4_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.270e-54
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:    1 MVVGRRRSFGERENKKDGLVTDIYEEPARGMPNVWCMTVNNTLCVRLVGRCGWGTWRIAYGVDYNVVAAWDAKDGYSTPATRCQTLQ 261
            MVVGRRRSFGERENKKDGLVTDIY+EPARGMPN+WCMTVNNT CVRLVGRCGWGTWRIA GVDY+VVAAWDAKDGYSTPATRCQTLQ
Sbjct:    1 MVVGRRRSFGERENKKDGLVTDIYDEPARGMPNLWCMTVNNT-CVRLVGRCGWGTWRIANGVDYDVVAAWDAKDGYSTPATRCQTLQ 86
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BLAST of mRNA_P-littoralis_Contig631.11.1 vs. uniprot
Match: D8LJS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.290e-16
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 2 
Query:  470 VCVMGDGRVLQLGNIWTEPACQGWMEIWRQLPPPRRGPQNLQV 598
            VCVMGDGRVLQL N WT+PACQG MEIWRQLPP RRGP NLQV
Sbjct:   17 VCVMGDGRVLQLENTWTKPACQGCMEIWRQLPP-RRGPHNLQV 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHU4_ECTSI1.270e-5494.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJS9_ECTSI1.290e-1686.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:27160..32697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size598
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_000430.1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.7624476-UTR-P-littoralis_Contig631:27159..273361680791317.7624476-UTR-P-littoralis_Contig631:27159..27336Pylaiella littoralis U1_48UTRP-littoralis_Contig631 27160..27336 -
1680791317.77242-UTR-P-littoralis_Contig631:27802..278931680791317.77242-UTR-P-littoralis_Contig631:27802..27893Pylaiella littoralis U1_48UTRP-littoralis_Contig631 27803..27893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.78485-CDS-P-littoralis_Contig631:27893..279621680791317.78485-CDS-P-littoralis_Contig631:27893..27962Pylaiella littoralis U1_48CDSP-littoralis_Contig631 27894..27962 -
1680791317.7967746-CDS-P-littoralis_Contig631:32182..324061680791317.7967746-CDS-P-littoralis_Contig631:32182..32406Pylaiella littoralis U1_48CDSP-littoralis_Contig631 32183..32406 -
1680791317.8073096-CDS-P-littoralis_Contig631:32660..326971680791317.8073096-CDS-P-littoralis_Contig631:32660..32697Pylaiella littoralis U1_48CDSP-littoralis_Contig631 32661..32697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.11.1prot_P-littoralis_Contig631.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 27894..32697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.11.1

>prot_P-littoralis_Contig631.11.1 ID=prot_P-littoralis_Contig631.11.1|Name=mRNA_P-littoralis_Contig631.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MVVGRRRSFGERENKKDGLVTDIYEEPARGMPNVWCMTVNNTLCVRLVGR
CGWGTWRIAYGVDYNVVAAWDAKDGYSTPATRCQTLQVLKKHATRDYPYS
SRVPCFRCG*
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mRNA from alignment at P-littoralis_Contig631:27160..32697-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.11.1 ID=mRNA_P-littoralis_Contig631.11.1|Name=mRNA_P-littoralis_Contig631.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5538bp|location=Sequence derived from alignment at P-littoralis_Contig631:27160..32697- (Pylaiella littoralis U1_48)
ATGGTTGTGGGCAGGAGGAGATCCTTTGGCGAAAGAGGTGAGGTACTTGA
CGAAATGTCCGTCGCGCGTGATTTGGCGTTTCATCTTTCTCCAGTACACG
CGCGGTGTCTCGAGAAACAACATTCGCACACTCGTCCTAAACTCTAGCAC
GTGTCGGAGCTGCGGCCGTTTTGAGTGCCAACGTGAAGCATGCTTTCTCC
CGTGGATTCCCGATGTGTCTAGAAGCAACATACGTACACTCGCCCTAAAC
TCTAGGTCCGCCCCACTCAATCGCGCAACTTCCAACACAAGAAAATAAAA
AGGATGGGCTGGTGACGGATATCTACGAGGAGCCGGCGAGGGGAATGCCA
AACGTGTGGTGCATGACGGTCAACAACACACTATGTGTGAGATTGGTGGG
GAGGTGTGGCTGGGGGACGTGGCGGATAGCTTACGGGGTGGACTACAATG
TGGTAGCCGCTTGGGATGCGAAGGATGGATACTCAACACCTGCAACACGG
TGCCAAACTTTGCAGGTGAGAAATTTATAATCGCAAATTTCAGAAAAGGC
TTTTTTTTTGCCGAAACAACGGGGAAATAATCAATCATCCCCGACCAGGT
ACACGAAAGGCACGGAAGTAGAGACAAATGCGCACGCACAACCCCGTTCT
CGAAGATCTGAGATACAGGGGAATAAGAAAGCGCTGTTCGCATAGAAAAG
GAGAAAGGACCTTTCCAGACCTTGGTTGGTCCCGGCTCGGCGTTTTGTCC
CGGTGCCGGTAGCTTTATCCCAAGCCAATTCGCGTGCGTTGTTTGTGTCT
CGCAACAAGATCCGCAAGCGCTGATGTCGTGTATGTGTAGTTTTGACGAT
TACAAGAACGCGTGTGCTTGGTTTTAATTTTCGATTGTGTTGAAAAGCTG
TGTGTGCTGTTCTGGTATTGCCTCCTCCTTCCAAGTCGAGATCGTACACA
TCCATGTGCTGATCCTGATCCTGGATCGGAGCTTCCAATTCTGTTTCGAC
GGCACCTACCGTGGATGTCAGTGTGCGTTTGTAAACTCCGGTCTGGTACA
ACAGATTTGACTTCCTTCGTCTCCCTAGGGCATGGCGTGTGTGTAGCTTA
TGCGTGTGTATTCAATGTATTCTCACTGCCAGCAAGCGGGAGCACATTCG
TGTTTTATGCGCGGCTGCTGTGCGCACGCTTTTAGTCTCTATCGGAACGT
GTGTTTCCTCACAGCACGCCTTGTTCTTCACAACAGACTTTCCAAACGAC
ACACACATTACAACTCAAAAATCCAGGATGGAAAACTCCGAGATATCGGA
TGACGAAAGCACGAACGGGTCGGTCACAGACCCCCGAACTTGAAGCGACC
GGCCCCCGTCGTCCACGACAACTCCGACAGTGACAGAGACACATAATTGG
AGGAACCGGCGCCCGCCTTCCACGCAGTCGATATGGAGGTGGCACAGATT
GTCCACCTGTGTATTCAATACGCCTAGCAAGCGGAAGCACGTTATTGTTT
TATGCGTGGGTGCTGAGCGCACGCTTTTTTCTCTACCGGAACGTGCGTTT
CCACACCGCCCGCCTTGCTCTTCACAGCAGACTTTCCTAACATCACACAT
ACAAATCGAGGACCCAGGACGGGAAACACTGTCGCTGGCGGAGAGGTCAT
CGACCCAACCAACTTCAAGCAATCACGGCCCGATCACAGACACTGAACTC
GAAGAGCCGGCTCCCGTCGTCCACAATATCTCCGATAGTGACACAGACAC
AAAATTGGAGGAACCGGCGCCCGCCTTCCACGCAGCCGGTGCGGAGGTGG
CACAGACTGGCCGCCTGTGTATTCAATATGTCTCACGGCCAGCAAGCGGA
AGCACGTCCTTGTTTCATGCGCGGGTGCTGCTTATACTCTTTACCGGAAC
ATGCGTTTCCACACAGCACGCGTTGCTCTTCACAACATTAGAAACCAAGA
TCCCAGGATGGGAAACTAGCACTTACGGCCCGGCTCCCGTTGTCCACCAC
ATGTGGAGGAACTGGCGCCCGCCTTCCACGCAGCCGATGCGAAGGTGGCA
CAGATTGTTCGCGCCGCCGCCGCATACTCTCAGCCGGGCCAAGCGCGGGA
GGAAGCTGAGCGACATTCCATGCAAGCTGGCCGCGTGTCGCCTTGAGGAC
CAAAACGACGCTCCCTGATTTCTGTTGCGTAGTTGTTTGCTGAAAAGGGG
GCGGCCATATGGCGCGACCCGATTCAGAGTGCCTGCTTGGATGCATTCAT
CGCGTGTTGCGCGAGGAGGGTAGAGTGTGTGGCCGGCGAGCTGCGGAATA
AATTGAAACTTTCAAATGACACTAATTTTGCACGATGGCGAGAAAGCAAT
GCTTCTTGTGCCGCGGCCAAGGTGATTTAGAGTCCTTGCTTGGATGTATT
CATCGCGTGTTGGGCGAGGAGGGTAGAGTGTGTGGCCGGCGAGCTGTGGA
ATAAATTGAAACACTCAAATGACACTGATTTTGCACGATGGCGAGAAAGC
AATGCTTCTTGTGCCGCGGCCAAGGTGATCTAGAGTGCCTGCTTGGATGC
ATTCATCGAGTGTTGCGCGAGGAGGGTAGAGTGTATGACCGGCGGGCTGT
GGAATAAATTGAAACACTCCAATGACAGAGGTTTTATTTCTGGTGCCGCG
GCCAGCTGCTCGAGGTCTATCCAGAAGGAAAAACACCGCTTTGCAAGTCA
CTGGTGTGTGCGTGACGATGGCTGTGCCCCGTGCCTTGCTACAAGCAAAA
CGATGGTTTGAGCACGTGATTTGAATGGGCGAACATGGTGCCGAGCAATG
TACAATCAACCACAAATTCCCTCGTACGAGCAGACCAAAAACACGTCGCG
CCGATAACTCGTGTCAATGTCTGCTATCGGCGGAGTGTGGCGATCGATGA
CTGACTCGTACATCAAGCGGGGTTCGCGGGAGGCGCTGTGTAGACGAGCT
TGGGCTTCTTGCCGCTCCAGTTACTCAGCCGACTCAAGTTGTCGGTAACG
TTAACAGCGATGTTGTTGAGCACCTTGTTCCTCCTTCTCTCATACAACTT
CCTCTGCTCGGGAACAGGGGAGTCCTTGAAGTCAAGGATACTCTCTGCGT
GCTTCTCGAAATGATCGATGTGGCAAGGCGAGATCACCCCGCTGAACATG
CGTACAGCTTCCTGGGTCTTGTCAACTAGGATTTGCAAGATGTTGTCATA
TGCCTCTTCCTTTGGGACGGGGATCCATCCTTTGCGGCTACAACACAACC
TGACTTTCTTGTCCCCTTTGCGTGCCCGGAAGCTGACGTTCTGTTCTAAG
GAGTACAGCTTTAACCCGAATTTGTAGAAGACATCGGGTCCAGGGAGGGT
GTTCAGCAAATCGCGATGAACTTGCTGGTGATGTGTTGAAGAGACTCCTT
GCCCAGAGGGTGCACGAATACAGCGGTAGTGTCGGCCTTGGCGACAATGG
CCTTGTTTGCACGAACAGGCTTGGATCGCCACTCCTCTTGCAGCTCCCCC
CGAGGGGTAGAGTACGGGGCGATGTTGGTTATGACCATGTGGTCCTGCAA
CGCTTTGGTAAGCATGATGTCGGACATGCGCTCCGCGCTTTGCGCGTACG
CGTACACGGAGCCGACATAATACCAAATTCCTAGGTAGATAAGATTCGGA
CACTCCGTGCGGAGAGGTTCCAACACGGTGCTCAAGTCAAAGCACGATGG
GTTCGCCTTCACCCTGAGCTTCCTGTCACGCAGCGCCATTTATTCTAGCA
TCATAAAATAATTTTGCTCATCTAGACGGTGGTGACAAGTGCAGGTTTTC
CTAACCCATATACAGGCGGTAAGCGGACTCTCTAGCATGTAATTAGCCAC
AATGTCTCGTCGAATACACACATTCCTTTTCAGATCGAAGACGCGAAAAG
TTCTTCGTCTGAGGCGCATGTGTGTCTTTGCGTCTTCGCGTCTTCGCTTC
TCCGATCCGAGAGCCGGCAACACAATGATCGTCGCGTCGATCTGACTTTT
GGCTTGCGATAGTAACGCTATCTGTTGGGCTAGAGTCAAGGTGAACACGC
TCCGCTTTTTTTCTGGTTTGGGACACGCGCAGCTTCATCGCACTGTGCAG
GCTGTAGCGGAAAAAGGAAGAACTTCAGCTATCGCTGCCGCCGTCGTTCG
TGTGCTCGGGTGATGCACAACAAGCTATCAGTCTCTTGCAGTCTCAGCCT
TGGTGATGCCACTACAGCTGCTAATTTGGCGGTGAAAGTGGTGTGTACGA
GTCATGTTGGGTACCATCACCTTCTGAAATCGGGTTGATTTTTGACGCGC
TATGTGTTTCTTTGGCGCACGAATCACTATCGTGCTTTCATGCGCCAAAA
AACAATTTTCTCTGGTGCAGATTCTGCTGCTTCTCGTAGAAGAAATCATC
GCCTGTATTCGCGCAGAGAGAGTGGGTGGAATGCTATGCGTGCTTGCTGA
TGTCAAGCGTTGTCTCGTACAGGGTGGCTCCGGTTAGTGCTCTTCGTTTG
AGGTAAAATACTGAAATAGAAACATAGTCCTCAAAAGCGATCATCGCCAT
CGTCCTAGTTGTGTTGCTGACCGTTGCATGATCGCCCCTGTCGCGGGGTC
TTTCGAACTGTGTTCGTGCGTTGTTTGTGGATCGCTGTTTGATTTTCCTG
GCTTTTGGGAGAGTAGATAGTTCTTTTCTGTGAAACCAGTTTCCGGCCCT
TTCCCGGCGCTTGTACACACATTCTCCCTGCACAGGTTTTGAAGAAGCAC
GCCACGCGCGACTACCCGTACTCTTCACGCGTGCCCTGTTTTAGGTGCGG
CTAGGTGGCGCGTTTGGATCCTCCGGGGATCTATCTTGTGCCCGGCTGTG
GTCCTTCTTTTCCGCCGAAGCATCTCTTGTCGAAAAACACCGCAGGTGAG
GTTCAATTTTCGTTGTTTCGTTTCTGATCTTGTCACGGGTGTGGCACGAT
ACACGCCTTCATTGCCAATGGATTGAGGTCGGAAAACTTTCTTCCCTTTG
CTGAGTTGGGGGCAACCAAATTCCTTCAGGTTGGTTTGTTTTTTCTGCTC
CCACCGCTCTCGCATTAGCATCAGCAGTACTAGTACTTTCAGCAACGGCA
ACTAGTTGTGTTCTGCGTGCCGGAAAATGCTTGTGAACGTCTTGGTCTGG
TAGGTAAATGCGCTTTTCCTACGCTTATCCGTGACATTTGTAGATATTGA
AAGTGTGTAAAAACGTTCCGCGGAAGCAGTCTCGGTTTGCATATTTTTCT
CCGAGTAGTGTTGCATTTTTTCGTTTGCCGTTGAGCGAATTTTGTGCACC
TCGCCATTTTCCCGCTCTCTCTCTCTCTCGTACACTTACCCTCCCTCTAC
CCGCACTCGAGACCCATGCCCCTCTTCGGCGCGGCTCTTGGATCGACGTG
GAGGCATTCGTGTGTGTGATGGGTGATGGGCGGGTCTTGCAGCTAGGGAA
TATATGGACGGAACCGGCATGCCAAGGATGGATGGAGATTTGGCGGCAAT
TGCCCCCCCCCCGACGTGGGCCACAGAACCTTCAGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:27160..32697-

>mRNA_P-littoralis_Contig631.11.1 ID=mRNA_P-littoralis_Contig631.11.1|Name=mRNA_P-littoralis_Contig631.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig631:27160..32697- (Pylaiella littoralis U1_48)
ATGGTTGTGGGCAGGAGGAGATCCTTTGGCGAAAGAGAAAATAAAAAGGA
TGGGCTGGTGACGGATATCTACGAGGAGCCGGCGAGGGGAATGCCAAACG
TGTGGTGCATGACGGTCAACAACACACTATGTGTGAGATTGGTGGGGAGG
TGTGGCTGGGGGACGTGGCGGATAGCTTACGGGGTGGACTACAATGTGGT
AGCCGCTTGGGATGCGAAGGATGGATACTCAACACCTGCAACACGGTGCC
AAACTTTGCAGGTTTTGAAGAAGCACGCCACGCGCGACTACCCGTACTCT
TCACGCGTGCCCTGTTTTAGGTGCGGCTAG
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