mRNA_P-littoralis_Contig631.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.1.1
Unique NamemRNA_P-littoralis_Contig631.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig631.1.1 vs. uniprot
Match: A0A6H5JQ60_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ60_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 4.100e-46
Identity = 82/123 (66.67%), Postives = 99/123 (80.49%), Query Frame = 3 
Query:   99 PVVGYDTADEMAEAILEHIFFEPLTTCCSRLGLPKRVLNDIVEQTMKAGVHGPAVSIFVVMALLCLAEKKEGGESADEAVMVKIPLMAAAEKVWSFKDLEQVAPTTLEEFLAGYRGAMGDIPA 467
            P+VG D  +EMA+ IL HIF EPL+T CSRLGLP+ V+NDIVE+TM+AGVHGPAV+IFVVM+LLCLAEK +G E AD  VMVK+PLMAAA  V SF+D+ + AP +LE FL GYR AM  +PA
Sbjct:  317 PIVGCDEDNEMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEK-QGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAMVGVPA 438
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BLAST of mRNA_P-littoralis_Contig631.1.1 vs. uniprot
Match: A0A6H5K5C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C0_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 8.600e-44
Identity = 81/123 (65.85%), Postives = 98/123 (79.67%), Query Frame = 3 
Query:   99 PVVGYDTADEMAEAILEHIFFEPLTTCCSRLGLPKRVLNDIVEQTMKAGVHGPAVSIFVVMALLCLAEKKEGGESADEAVMVKIPLMAAAEKVWSFKDLEQVAPTTLEEFLAGYRGAMGDIPA 467
            P+VG D  +EMA+ IL HIF EPL+T CSRLGLP+ V+NDIVE+TM+AGVHGPAV+IFVVM+LLCLAEK +G E AD  VMVK+PLMAAA  V SF+D+ + AP +LE FL G R AM  +PA
Sbjct:  322 PIVGCDEDNEMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEK-QGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGCRAAMVGVPA 443
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BLAST of mRNA_P-littoralis_Contig631.1.1 vs. uniprot
Match: A0A6H5L0Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.980e-24
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 3 
Query:  180 CSRLGLPKRVLNDIVEQTMKAGVHGPAVSIFVVMALLCLAEKKEGGESADEAVMVKIPLMAAAEKVWSFKDLEQVAPTTLEEFLAGYRGAMGDIPA 467
            C++L     V+     QTM+AG+HGP V+IFV+M+LLCLAEK +G E AD  VMVK+PLMAAA  V SF+D+ + AP +LE FL GYR AM  +PA
Sbjct:  215 CTKLAAVFPVIG--YNQTMRAGIHGPTVTIFVIMSLLCLAEK-QGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAMVGVPA 307
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JQ60_9PHAE4.100e-4666.67Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K5C0_9PHAE8.600e-4465.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0Z2_9PHAE2.980e-2456.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:9776..11051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size483
Hectar predicted targeting categoryother localisation
Exons4
Cds size396
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.1.1prot_P-littoralis_Contig631.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 10124..11044 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.659974-UTR-P-littoralis_Contig631:9775..98021680791317.659974-UTR-P-littoralis_Contig631:9775..9802Pylaiella littoralis U1_48UTRP-littoralis_Contig631 9776..9802 +
1680791317.67433-UTR-P-littoralis_Contig631:10070..101231680791317.67433-UTR-P-littoralis_Contig631:10070..10123Pylaiella littoralis U1_48UTRP-littoralis_Contig631 10071..10123 +
1680791317.7274668-UTR-P-littoralis_Contig631:11044..110511680791317.7274668-UTR-P-littoralis_Contig631:11044..11051Pylaiella littoralis U1_48UTRP-littoralis_Contig631 11045..11051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.6845896-CDS-P-littoralis_Contig631:10123..102061680791317.6845896-CDS-P-littoralis_Contig631:10123..10206Pylaiella littoralis U1_48CDSP-littoralis_Contig631 10124..10206 +
1680791317.6991458-CDS-P-littoralis_Contig631:10420..105891680791317.6991458-CDS-P-littoralis_Contig631:10420..10589Pylaiella littoralis U1_48CDSP-littoralis_Contig631 10421..10589 +
1680791317.7166674-CDS-P-littoralis_Contig631:10900..110441680791317.7166674-CDS-P-littoralis_Contig631:10900..11044Pylaiella littoralis U1_48CDSP-littoralis_Contig631 10901..11044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.1.1

>prot_P-littoralis_Contig631.1.1 ID=prot_P-littoralis_Contig631.1.1|Name=mRNA_P-littoralis_Contig631.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MALPTHPVVGYDTADEMAEAILEHIFFEPLTTCCSRLGLPKRVLNDIVEQ
TMKAGVHGPAVSIFVVMALLCLAEKKEGGESADEAVMVKIPLMAAAEKVW
SFKDLEQVAPTTLEEFLAGYRGAMGDIPAGG*
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mRNA from alignment at P-littoralis_Contig631:9776..11051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.1.1 ID=mRNA_P-littoralis_Contig631.1.1|Name=mRNA_P-littoralis_Contig631.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1276bp|location=Sequence derived from alignment at P-littoralis_Contig631:9776..11051+ (Pylaiella littoralis U1_48)
ACTGCTGAACGAGTTTGACGAGTGCAGGTGCGCGATTCAACCGGTGAGAG
CATCTCGATTGCCTAAGCTGTACACTCCAAATACTGCAAGTGTTTTGTCG
CTTCATATTTACTTCGTGTGGACGTATGAAAACGTCGATTGGACGTGTTT
GAGTGGGTGTGATATCACTGTACGAGTACAACATATGATAGGCAGATGAT
ACGCGCCAAGCTCTAACGGCGTTCCATCTCTTGCCGCGTGAACGTTGCGA
ACTTTAACACTCCCCATCACTACTGAAACCGTGTCCTGGGCGCAGGTCAT
GAGCTACACGTGGTCCGTCATCACGAGGCACGCCGCTCCCGTCTTCGGAT
GGCTCTCCCGACACACCCTGTGGTGGGGTACGATACCGCCGACGAGATGG
CCGAGGCCATCCTCGAGCATATCTTTTTCGAGTGAGTGTACATGCCATCG
TAGTAGCGGCGTAAGCAGGTCCTTGCTCTCAGCGGTATTGACAACCTGTT
GCTGACACGTGCGGGATAGGTTGGTCGTCCCCCCCACCCACCACCCAACC
CCCACGCCCCGCTCTCTCTTCACGCCCCGCTCTCTCTCAAGATTCCAAAC
TCATCTCCCGAACTCGTTGAACTTCCTATCTCCTGCTGCTCCCAGGCCTC
TGACGACATGCTGCAGCCGACTGGGCCTGCCCAAGCGGGTTTTGAACGAT
ATCGTCGAGCAAACCATGAAGGCCGGCGTGCACGGCCCGGCTGTTTCGAT
TTTCGTGGTCATGGCGCTCCTCTGCCTGGCGGAGAAGAAGGAGGGGGGAG
AGAGCGCTGACGAGGTACAAGGTCGTGCTGCTCTCAACTCTAGAGACTGC
TTTGAATGCATTTGTGGTCTGATTGACACCGATGCCGACTGCTTCGTGCG
ATGTAACAATTTACCACACCATGACCACGTTAGTGGGTCTCAAGTGCAAC
CCAATCTGCCCCCCATCAACGTCGGCATTTTATCACCTGTTGTGACAAAA
AGAGCGTGATGTTGTAGACAACAGCTGCTGCCCCCCTCGCCCCGTCGAGG
TGTCGTAATCGAGCGTGGAATTCCTCTTTCACGATATCCGTGACCCACAC
CCCATCCCATGCTGCATCGTCCAAGGCGGTGATGGTCAAGATTCCCTTGA
TGGCAGCCGCCGAAAAGGTTTGGTCTTTCAAGGACCTCGAACAAGTGGCT
CCGACGACGCTGGAGGAATTCCTCGCCGGCTACCGAGGGGCGATGGGCGA
TATCCCGGCCGGTGGCTGAAGTGCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:9776..11051+

>mRNA_P-littoralis_Contig631.1.1 ID=mRNA_P-littoralis_Contig631.1.1|Name=mRNA_P-littoralis_Contig631.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig631:9776..11051+ (Pylaiella littoralis U1_48)
ATGGCTCTCCCGACACACCCTGTGGTGGGGTACGATACCGCCGACGAGAT
GGCCGAGGCCATCCTCGAGCATATCTTTTTCGAGCCTCTGACGACATGCT
GCAGCCGACTGGGCCTGCCCAAGCGGGTTTTGAACGATATCGTCGAGCAA
ACCATGAAGGCCGGCGTGCACGGCCCGGCTGTTTCGATTTTCGTGGTCAT
GGCGCTCCTCTGCCTGGCGGAGAAGAAGGAGGGGGGAGAGAGCGCTGACG
AGGCGGTGATGGTCAAGATTCCCTTGATGGCAGCCGCCGAAAAGGTTTGG
TCTTTCAAGGACCTCGAACAAGTGGCTCCGACGACGCTGGAGGAATTCCT
CGCCGGCTACCGAGGGGCGATGGGCGATATCCCGGCCGGTGGCTGA
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