mRNA_P-littoralis_Contig630.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig630.22.1
Unique NamemRNA_P-littoralis_Contig630.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig630.22.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-13
Identity = 60/166 (36.14%), Postives = 87/166 (52.41%), Query Frame = 1 
Query:    1 STIHVN---KGD--------FVPIPYSKFAPGKKKETL--WQPLCRLAYN-TFMGVDLADQLNGYYLTLHKAYNYFWRRVFEQKLMQACSNAWLLYKWWLADMLVQVNEEITKVEKGGYAEGTPERLQLQALENEQADLRKLQNKKRAQWLRALAMHLIAQSTLGR 456
            STIHV    KG         F P+P S  A G+  E L   QP  R+ Y    +GVDLADQ NG +   HK+Y  FWRRV++ KL QA +NA+L+++ W+ ++L++  E    +  GG         +L+ LE    +L  L   +RA W   +A  L+A+  + R
Sbjct:  566 STIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWV-ELLIREVEAKKPIAPGG---------ELEELELASTELATLSKVERAVWDEQMATLLMAECNVAR 721
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BLAST of mRNA_P-littoralis_Contig630.22.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.700e-13
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 1 
Query:   28 FVPIPYSKFAPGKKKETL--WQPLCRLAYN-TFMGVDLADQLNGYYLTLHKAYNYFWRRVFEQKLMQACSNAWLLYKWWLADMLVQVNEEITKVEKGGYAEGTPERLQLQALENEQADLRKLQNKKRAQWLRALAMHLIAQSTLGR 456
            F P+P S  A G+  E L   QP  R+ Y    +GVDLADQ NG +   HK+Y  FWRRV++ KL QA +NA+L+++ W+ ++L++  E    +  GG         +L+ LE    +L  L   +RA W   +A  L+A+  + R
Sbjct:  262 FKPLPLSLRAKGRNGEPLDLQQPWTRMDYFLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWV-ELLIREVEPKKPITPGG---------ELEELELASTELATLSKVERAVWDEQMATLLMAKCNVAR 397
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BLAST of mRNA_P-littoralis_Contig630.22.1 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 8.960e-8
Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   85 QPLCRLAYNTFMG-VDLADQLNGYYLTLHKAYNYFWRRVFEQKLMQACSNAWLLYKWW 255
            QPL R  Y   MG VD+ADQ  G +   H+   +FWRRVF+QKL  A SNAWLL+  W
Sbjct:  289 QPLARKKYVKNMGGVDVADQRLGAHAHTHRPMTFFWRRVFDQKLSHAVSNAWLLFYEW 346
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig630.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LEE0_9PHAE1.200e-1336.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JER6_9PHAE2.700e-1336.30DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5JDZ7_9PHAE8.960e-853.45DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig630contigP-littoralis_Contig630:168882..170120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size463
Hectar predicted targeting categoryother localisation
Exons2
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.455127-CDS-P-littoralis_Contig630:168881..1689281680791317.455127-CDS-P-littoralis_Contig630:168881..168928Pylaiella littoralis U1_48CDSP-littoralis_Contig630 168882..168928 +
1680791317.4688747-CDS-P-littoralis_Contig630:169704..1701191680791317.4688747-CDS-P-littoralis_Contig630:169704..170119Pylaiella littoralis U1_48CDSP-littoralis_Contig630 169705..170119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig630.22.1prot_P-littoralis_Contig630.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig630 168882..170119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig630.22.1

>prot_P-littoralis_Contig630.22.1 ID=prot_P-littoralis_Contig630.22.1|Name=mRNA_P-littoralis_Contig630.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
STIHVNKGDFVPIPYSKFAPGKKKETLWQPLCRLAYNTFMGVDLADQLNG
YYLTLHKAYNYFWRRVFEQKLMQACSNAWLLYKWWLADMLVQVNEEITKV
EKGGYAEGTPERLQLQALENEQADLRKLQNKKRAQWLRALAMHLIAQSTL
GRQG
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mRNA from alignment at P-littoralis_Contig630:168882..170120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig630.22.1 ID=mRNA_P-littoralis_Contig630.22.1|Name=mRNA_P-littoralis_Contig630.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1239bp|location=Sequence derived from alignment at P-littoralis_Contig630:168882..170120+ (Pylaiella littoralis U1_48)
TCCACCATCCACGTCAACAAAGGAGACTTCGTCCCAATCCCGTACAGGTG
AAGCTTGCGTCTAGTCGTTGACTAAACAGTAGTCCAACAAACACTCTTCA
ACCTGCAGTTTTGGCGCGTCTGGAGCGAGAGGTTGAGGTCTGAATGCAGG
GGGGGAGTGTAGTGGTATTTCGCGTACGCACTGTGTGCATTGCGTGTCGT
CGGTTCGCGCCCGTCCCCGTTTGGACTTAGGGGTTAGAAATCGTCATTGC
CCGTCTTAGTAAAACAGCAGCAGTGTTCATTTTTCCGCCGTCATTGCTCC
CCTTATTTTCGGCCAAAACACATGAACACATGGCACCCGGAGCAGTAAGT
CAAAACGGCAGATGCGCGAGCATGGAGGGAATCAGAAATAACTGCCGACA
TTATCCCTTTGTACGATAGAAAGAGGGCGTGCTGTCAGTCACATTTAGCG
ATAGCTATCTACAGGGCCGCGTATATAATGTGTGTGTTGTGCGTGCACTT
GGCCTTCGGGCTTTTCTCCCGGGGTAAGGTTGAAGAACTGTCTTCGTATC
CCCGCGCTCGGAATATTTGACGCCAGGTTTTGATTGTTTCACTTTTTATT
TAACAAAAACAATCTGACAGGATTCCCCAGGAGTGCTGTTCAAAATAAAA
CATCACCAAGAGGGAAAACAGACGTGGTTGCTGCGCGCAACTCACGTTCT
TTTATTGCCTTTTTGGACCCCCACCTCAGGCGTTTCCTGCCAAAACTGGT
TTTTTGACGCTCGTGAAAACATCGCCCTGTCCCCTCACCTCCCACACTTT
CCGTTCTTACTTTGTTCTTCCAGTAAATTCGCCCCGGGAAAAAAGAAGGA
GACACTGTGGCAGCCGCTGTGTCGACTCGCTTACAACACCTTCATGGGGG
TTGACCTCGCCGACCAACTAAACGGCTACTACCTTACCCTCCACAAGGCA
TACAACTATTTTTGGAGGCGCGTGTTCGAACAGAAGCTCATGCAGGCGTG
CTCAAACGCGTGGTTGCTGTACAAGTGGTGGCTCGCTGACATGCTTGTCC
AGGTCAACGAGGAGATTACCAAGGTGGAGAAAGGCGGCTACGCAGAGGGC
ACGCCCGAGCGGTTGCAGCTCCAAGCGTTGGAGAATGAGCAGGCGGACTT
GAGGAAACTCCAGAACAAGAAGCGGGCGCAGTGGTTGCGAGCTTTGGCCA
TGCACCTCATCGCTCAGTCAACGCTGGGCCGCCAGGGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig630:168882..170120+

>mRNA_P-littoralis_Contig630.22.1 ID=mRNA_P-littoralis_Contig630.22.1|Name=mRNA_P-littoralis_Contig630.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig630:168882..170120+ (Pylaiella littoralis U1_48)
TCCACCATCCACGTCAACAAAGGAGACTTCGTCCCAATCCCGTACAGTAA
ATTCGCCCCGGGAAAAAAGAAGGAGACACTGTGGCAGCCGCTGTGTCGAC
TCGCTTACAACACCTTCATGGGGGTTGACCTCGCCGACCAACTAAACGGC
TACTACCTTACCCTCCACAAGGCATACAACTATTTTTGGAGGCGCGTGTT
CGAACAGAAGCTCATGCAGGCGTGCTCAAACGCGTGGTTGCTGTACAAGT
GGTGGCTCGCTGACATGCTTGTCCAGGTCAACGAGGAGATTACCAAGGTG
GAGAAAGGCGGCTACGCAGAGGGCACGCCCGAGCGGTTGCAGCTCCAAGC
GTTGGAGAATGAGCAGGCGGACTTGAGGAAACTCCAGAACAAGAAGCGGG
CGCAGTGGTTGCGAGCTTTGGCCATGCACCTCATCGCTCAGTCAACGCTG
GGCCGCCAGGGG
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