mRNA_P-littoralis_Contig63.117.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.117.1
Unique NamemRNA_P-littoralis_Contig63.117.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:541943..548126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FI26
Preferred nameCMSS1
PFAMsCMS1
Model size419
Max annot lvl2759|Eukaryota
KEGG koko:K11858,ko:K14784
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0032991,GO:0042254,GO:0042274,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0071840,GO:1990904
Exons2
Evalue0.00058
EggNOG OGsKOG3089@1|root,KOG3089@2759|Eukaryota
EC3.4.19.12
DescriptionU3-containing 90S pre-ribosomal complex subunit
Cds size417
COG categoryO
BRITEko00000,ko01000,ko01002,ko03009,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791315.6508734-CDS-P-littoralis_Contig63:541943..5422001680791315.6508734-CDS-P-littoralis_Contig63:541943..542200Pylaiella littoralis U1_48CDSP-littoralis_Contig63 541944..542200 -
1680791315.6689575-CDS-P-littoralis_Contig63:547966..5481261680791315.6689575-CDS-P-littoralis_Contig63:547966..548126Pylaiella littoralis U1_48CDSP-littoralis_Contig63 547967..548126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.117.1prot_P-littoralis_Contig63.117.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 541944..548126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.117.1

>prot_P-littoralis_Contig63.117.1 ID=prot_P-littoralis_Contig63.117.1|Name=mRNA_P-littoralis_Contig63.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
FTHSQLFTCVWEHFDSSHTKQRSRSMGDDLGDDWGVEGIDAGEEGISMVA
AEAVSSNDMKKHKKTKTKTKTKKDNNNGKPTASPAIAGRKRSRAQLSAEG
FEESDGEGGGTGDEEEEEDDDEEARLKAAVEEQVKALRA
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mRNA from alignment at P-littoralis_Contig63:541943..548126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.117.1 ID=mRNA_P-littoralis_Contig63.117.1|Name=mRNA_P-littoralis_Contig63.117.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6184bp|location=Sequence derived from alignment at P-littoralis_Contig63:541943..548126- (Pylaiella littoralis U1_48)
TTCACTCATTCACAGCTGTTCACTTGCGTTTGGGAGCACTTCGACTCCTC
CCACACCAAGCAAAGAAGCCGAAGTATGGGGGATGATCTGGGCGATGATT
GGGGGGTGGAAGGGATCGACGCGGGCGAGGAAGGCATCTCCATGGTCGCT
GCTGAAGCAGGTAGGGAATTAGGAGGAAATCACTGGAATCCCACGTGCGG
CGGAATTGTCATCGTGCCGCACGACGCACCCCACAGCCAGCAGTGCCAGC
AGCCAGCAGTTCAGCAGTTAGCAGTTCGCGTTCCGCGATGACCACGGGGT
AGCCCAGCCCACAGTCAAGCTATGATTGACCGCATCCTGTCCACCACAGG
CATTAATTTATCCTCTGGTCGCGTCCACGTCCACCGTGTGCATTATTTTT
TTTTCAACAAAAAAAAACAAGGTGCGGCCTATCCCATCCTCCTTGTTCTA
CCAACATTCATGCATGCATGTGTGGACAGGATTAGATATCCATAAAACAG
GCACGCCAACGCACAGCAGCGGCAGTAGTTGTAAATGGGTTGAGGCGGTG
GTTGAGTGGACACGGCTTGTGTACCTAGCTATTTTATGTATGTCTTGTAG
CACGCAACTGTAGACTGGCGTCCAGAATAGATGGGATGACAACACACCCC
ACATACACAGGACACGGCTACTCCTACTCTTGTAAACAGCATTATTTATT
TTTGGCCTTTCGAATAACGGACGTTTCCAACAGGCCCTTTTGGAGCACCC
GAACTTAAGGCAACACTACTGGGGACGCCAGGCATCATCCCCTCGGGCTC
CGTGGTGGTATTATTGGGTCCACCACATATATCTATATGTGTGTGTGTTG
TCATCCCATATTCTCTGGCACACTAGTCTGCACCTTACGGTTCAAACTAC
AGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGCCAACACAGGAGG
AGTTACCCCCACCTTCCTTCTGCGGTACGTGCGTGAGATTTTTTCTCGCG
AGCAGGGGTCCGCGGTCCCTACCCTCGTCGGCGAAGCCGAATCTGCTTTT
ACTAACAGCATAGCCGCTTTCAAAGTAGCAAAGGAACACATTCACCGGGA
ATCGAACCCCCGTTCCTCTGCATCTAGTGGTTACCGAAGGACCACTAGTC
CACCGGGGCGACCGGAGTTATGTATACTTGTATGTACTTCGTATATATTT
TTCCCACATGTCAAACTTCTAAAAAAATCCTGGGGGGTGCCCTCTCCTGA
CTTCTGTACACTCCCTGTCCACCCTCCCCCATTGAGCCTTAGGAGGCACA
AACCTCCAAAGTTTTTAAGAGATATCACGGCAGCTTCAACTCCTGCGTGG
GTTAGAATTGTGCCCAACCTCTGTAAACGCCTTGTAGCTCGAGATCGAGG
TGCTCAAACTTGAGGATCCGGGGACAACAGATCGTTGAGACGCACGGATT
TTGAAAAACAGCGAACGGACCCTGACAAAGACACACTGGGTACCTCTCCA
GTTGGACGGTGTCGGGAAAGAGAGCAACTGTTGGTTATCGCACACAGCGG
CGACAGGAGCTTCTCTTTACATGCCTTTCACATGTATACCTCCAATCTCC
CACATCAACATCAAAATAATGTTTTAAATACACTAAAACCAAGTCAAAAT
AACTTATTTTGATAAGGCTCAAACATGGGCTGTTGTCCACGGGAGTCCCG
ATAACCTCGAACCAATCAGGAGAGAACGTCATGAAGTAGCTACATGTGCG
TCGGCACATTCAGATCTGCTGCTGGGGCGTAGATATCGATGGTCGCAGTA
GAGGATCAAAAACTCCGCAAAATGGACAGATTCCAAAAAACATCTTCCAC
TGCTGTGCTATCTCCCACTGCTGTACTCGCCGCCACATACCCCCAACCTC
CTGAACTACGGGTCAACAGCAGTAGCTGATGCCACAAGCTACCTCGGACG
AACCGCATTTCAAAAGATTGGTGCCGATGGCGGCGAGTACAGCTGCGTCA
AACGTTTGGTGTCAGTCTGGATTGCGGAGTTTTTCAGGGATCCTGCGGAG
TTTTTTAGCCACTGCTGCGAACTTCGATATCTAAGCCCCAGCAGCAGATA
TGAATGCGCCGACGCACACTTAGCTACAGTACTGCATGGCGTTTTCTTCT
GATTGGTTCGAGGTTATCGGGACTCCCGCGGACAACAGCCCATGTTTGAG
CCTTGTCAAAATAAGCTCTTTTGACTTGATTTTAGAAGTCGTTTGAAAAT
TATTTTTCCATTTATGTAGTAGATCGGAGGTAGACATGCATGTAAAGAGA
AGCCCCTGCTGCCGCTGTGTGCGATAGCCAACAGTCGTTCTCTTTCCCGA
AGCCTTCCTACTGGTGTGAGGTACCCAGTGTGTGATTGTCAGGGCCCGTT
CGCTGCTTTCCAAAATCCGTGCGTCTCAACAATCTGTCGTCCCTGCATCC
TTGAATCTACTTGCCAATACCGAACAGCGGGTGGTTTAGACCGACTCTCA
TGATCGGAATATTTGCCCCTTTTTCACCGGAAATATGGTTTTGTTTTGGT
CGATAACCGTTCACCAGACCTAATGGGGGGGTTATCTGCTGGAAATCGGA
AATAAAATATCCTGAACGTCGTGGATAATTTGAAAGCCCAGGATAATTGG
GCAATTATCCTGGGTGTTGGGAAGCTCCGAAATAATTTGGGAAAACCCTT
TTGGAAGGCTTTCCGGCACAAATGCAGTCTCGCCGGTCGCTGAAGGGACC
AGGACACAGAAAGGGAGCTGTCATAAGCAAGTAGTTGTTCTGTTGTTGTT
GCGCTGTGTGTCCCTCGCTCTCTGTGCCTCTCTGTGGACCCCTCCCTGTG
GGTGAGTGTATTCGGAAGACCAGCAGCAGCACAGCAGCAGTAGAGTAATG
GATGACGAGACACTCTCCTCTCATTGACATTATTGAGATATTGGGAGGTT
TCTCTGCACACAGCAGCAGCAGCAGTGTGATCGGTCGCCGTCTGTCTCGC
AGCGCCTGGTTCTTCCGATAAGTATCACAGATGTACCTTTTTTCCCCATT
TATTTTGTTCGCCTGTCTGTTATTCTTGTTGTTGTTGACTGTCACATTCT
GGCTCACCACCAAAGTCTGACCCGTGGCAACAAACCAAGCGCACGTCTAT
GCTTGGCTTGAGGAAAAACTCAGACAACATGTTGAAAGCAATAACAATTA
ATTGTAATAGACATCGAAGTACGAAGGACACACAGACACCTAGCTGCTCT
CCAACTCTCCGACAGCATGTTGGAAGAGTATTTTGTACTTCGTACTTTGT
ACTCCGAAGTATGCATGGGAGAGAGAGGTGGGAGTGGGCAGTGATGACGT
AGCGAGAGCTCTATGTGATATTTGTTCTGCGCCCATAACTTGCAACTTTG
TGGAGTATCTAGGATACTTTTTTATCTCCCGATAAGCAGTGGTTTCTAAA
TATCTACGGGGATTTTCAAAGTCGTTCAGAGTGCGTGATATCCCATGATT
TCCAGCATATCCCGGACTCAAAATTATCCTACCAAAGGAGTCGGCCTTAC
AAAAATCCAGGAAAAAAAAATCGAAAAAATAAAAGTCTCTCCTGTTCCGC
CGGGGCGGTTTGATGGTTGACATTCATTTTGCACTGCTGTAACCGGTTCG
CTAATTCGTTCACCACCCTCGAACGATTGAGCCTAGAACGATGGCAAAGC
CGTGCCTCGTGAGCTGTTTACATGGTCCCTCTTCTGCTGTTGTCACCTGA
GGCCGCGAGGCAACGATAGACAAGCAAAAAGTTTGCAGGATATAATCGAT
GACGTGTGACGAAAGAAAACTAAAACGATCCATCTCCAAGCTGGTGATGG
TAATTTCTTCTTTTTGCCACAGGTCATCGACTCCTGCAATCCTTCTTTGC
CAGCCTATCTATGCCTCGCTCCTTCAGAGGACCACTATAGGAGGAAGACG
ATTGCTTCATTCGTTCGAGGGTGATCAACCAAATACCAAACTGGAGTGGC
GGCAAAAATACCTGCTGCTGTGTTGAAGAGGGCAGCAGCAGCAGCAGCAG
CTAGCTGCCAGCTCTCGTCCGATCCATTTCGGTTTTTGGTCAATCGCTCT
CGAACGAAAGAACCCACAGTGATACTAAAGCCATCGGCCGTGAGGTGTGT
GTACATTCTTTCTCCTGCGGAGGCCATCAGAGGCCGCGAGGAATCGATGG
GCTACGAAAACAAAGTTTGCGGGTCATCTCATCATGCAAGGCTGACTCTT
ACGTGGGGTGTTTCAACTCCTTGACCCAAACAAAATACTTCGCAGTAACA
GGTTTCCGATAGATGCAGGCTGTAAAAATATATACGGAGTATATACATCT
TGCTCGTGTTCTATGTGGGATAACCTGCAAGCGGTGCTAGCGGAAGACCG
TGACCTGCTTATAAATGGAACAATTAATCAGTACAACACATGTTAACTGT
CACTGGACGCCTGTCCCTAATTGCAGTAACTTATGTGAGACGTGAGGTAC
GAGAACTTCAGTCACACAGAAATTTCCGGGAAATATTAAGTTTTCCGGCC
TTTAAGAAAAAAATATGTGATTTCGCTGTTTTGTAGAGTCGCAGCCGTTG
ACAGTCGCTTACTTCTTTTGGGGCTATCGGAAAAAGTTATTCGAAAAGTC
ATTGTTTATAAAGGCTGTTCATGATCACGTAAGATAGCGATCTTGGACCA
ATACTCAAAACAGTTTTTGACACATAAGATGTAGCCTTATGATTGTAATC
TCCTTGACGAAGCAGCCGGTCGGTGCTTTCGTAGTTTATGTTGTGCGGAG
TTGTTACGCATACATCGCACCGCCAATACAGCTAAAGTGAGAGGAAGAAC
CCTTGGTCGAGAGTAGGTTTGATGCGCACGGGTGCACAGAAGAGGTGGGA
TGGCAAAACGAACACCATCTTACACGTGTGACAGAAGATGTGGCAAACAC
CAGTGCACGTACAGAATGTGTGGGAAGCTAATCGTTGTATGATAGCTCGT
CGAGTGGCGCGTAGATTCAACGCACACACACACACTTTTGCCCTCATCTG
GCACTCGGGTAGCCACTCTGACATGACCACTTCGAAGTGCAAAACCTCGC
AGTATAAGTGTTCGATCTCTCCCAGTCGTGCCGCGTGATTTCACTCGAAC
TGCCTCGCGGAGAAGACGCGCGTGCTTTTCGCATCGGCACAAGCGATGTA
CTACCGGTAAGGTACATGTATTCGCATATAATATATACCAGGTATATATC
CGATACCTGATCTAATGTGTTTTGCAGGCGATCAGAACTCTGCTGCACGG
CTCACGGGCTATGTTCGTAGATCTCACAGACAGTATCTGCGTAGCATGGC
ATGACTTGCTTTTGAGCCACCCTTCGGTGAGGATCAGACGCTCGATTTGA
TGAGCTCATCTCATTCGCCAGGTAGTGCAAATTTCGTGCATATTTTTTGT
TGGTTAGTTCATTAACAGGTAATTGTTCAGTTAAATATTTTAATATTTTT
AATTTTCACGAAAGTACCGGTGTACTTGTATTTTTTTTCTTGTTTGTTTA
GTCATGGAAGTCACTCGTTTTTACCGTTCGACAATGTGGCTACTGCTGTG
CTAGCAGAGTTCACGCGGGCAGAACGACATCAGTCTTTACAAGCGAGTCG
AAGTCATTCTCTCACGTTATCGTCGATCAGTAAAACCTTGCGAGATGTAT
CATGCGAAGTACTTCATCTAATGGTTGGTTCTCGTTTATTTGTTCTTAGC
TCGCCGTTTCTCTGTCGTTTGCCGTCTCCGTGTCTCGCTCTCTTCCGCTC
CCTCTCTCGCTCTTTCTCTTTCTCTCTCTCTCGCGGTGGGTCGACCGGTC
TGTCTTCCATTAATACTAACCACGGGAAACTTACATCACCTCCACGTCGA
AACGCGCAAACAACGTGCGCACGCAGTATCGTCAAACGACATGAAAAAGC
ACAAGAAGACCAAGACCAAAACCAAGACCAAGAAGGACAACAATAATGGT
AAACCCACCGCATCTCCAGCGATCGCTGGCCGGAAGCGCAGCCGGGCTCA
GCTCAGCGCCGAGGGTTTCGAGGAGAGCGATGGCGAAGGGGGGGGGACAG
GGGACGAAGAAGAAGAAGAGGATGATGATGAGGAGGCTAGACTCAAGGCG
GCGGTGGAGGAGCAGGTCAAGGCACTGCGCGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:541943..548126-

>mRNA_P-littoralis_Contig63.117.1 ID=mRNA_P-littoralis_Contig63.117.1|Name=mRNA_P-littoralis_Contig63.117.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig63:541943..548126- (Pylaiella littoralis U1_48)
TTCACTCATTCACAGCTGTTCACTTGCGTTTGGGAGCACTTCGACTCCTC
CCACACCAAGCAAAGAAGCCGAAGTATGGGGGATGATCTGGGCGATGATT
GGGGGGTGGAAGGGATCGACGCGGGCGAGGAAGGCATCTCCATGGTCGCT
GCTGAAGCAGTATCGTCAAACGACATGAAAAAGCACAAGAAGACCAAGAC
CAAAACCAAGACCAAGAAGGACAACAATAATGGTAAACCCACCGCATCTC
CAGCGATCGCTGGCCGGAAGCGCAGCCGGGCTCAGCTCAGCGCCGAGGGT
TTCGAGGAGAGCGATGGCGAAGGGGGGGGGACAGGGGACGAAGAAGAAGA
AGAGGATGATGATGAGGAGGCTAGACTCAAGGCGGCGGTGGAGGAGCAGG
TCAAGGCACTGCGCGCT
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