mRNA_P-littoralis_Contig1162.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1162.15.1
Unique NamemRNA_P-littoralis_Contig1162.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1162.15.1 vs. uniprot
Match: D7FRT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT7_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.990e-6
Identity = 20/27 (74.07%), Postives = 26/27 (96.30%), Query Frame = 3 
Query:  120 DVYDRDQLLRAVSLQAQGLPDDPKRHA 200
            D+Y+RD+LLRA++LQAQGLPDDP RH+
Sbjct:   61 DIYNRDELLRAINLQAQGLPDDPSRHS 87
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BLAST of mRNA_P-littoralis_Contig1162.15.1 vs. uniprot
Match: D7FRT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT9_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = 3 
Query:  120 DVYDRDQLLRAVSLQAQGLPDDPKRHA 200
            DVY+RD+LLRA++LQAQGLPDDP RH+
Sbjct:  430 DVYNRDELLRAINLQAQGLPDDPSRHS 456
[Close]
BLAST of mRNA_P-littoralis_Contig1162.15.1 vs. uniprot
Match: A0A6H5JMP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP8_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 3.800e-5
Identity = 20/27 (74.07%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:  120 DVYDRDQLLRAVSLQAQGLPDDPKRHA 200
            D+Y+RD+LLRA +LQAQGLPDDP RH+
Sbjct:  429 DIYNRDELLRATNLQAQGLPDDPSRHS 455
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1162.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRT7_ECTSI2.990e-674.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRT9_ECTSI1.080e-577.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMP8_9PHAE3.800e-574.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1162contigP-littoralis_Contig1162:60300..60854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size203
Hectar predicted targeting categorysignal anchor
Exons2
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789483.337847-CDS-P-littoralis_Contig1162:60301..603691680789483.337847-CDS-P-littoralis_Contig1162:60301..60369Pylaiella littoralis U1_48CDSP-littoralis_Contig1162 60302..60369 -
1680789483.3515987-CDS-P-littoralis_Contig1162:60721..608541680789483.3515987-CDS-P-littoralis_Contig1162:60721..60854Pylaiella littoralis U1_48CDSP-littoralis_Contig1162 60722..60854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1162.15.1prot_P-littoralis_Contig1162.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1162 60302..60854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1162.15.1

>prot_P-littoralis_Contig1162.15.1 ID=prot_P-littoralis_Contig1162.15.1|Name=mRNA_P-littoralis_Contig1162.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
EAITYGIEIDKPALVSIVWLLALSFVGISWSVYLRSTIGMTFTTGTSCYA
QFPSKHRASPTTPRGTQ
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mRNA from alignment at P-littoralis_Contig1162:60300..60854-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1162.15.1 ID=mRNA_P-littoralis_Contig1162.15.1|Name=mRNA_P-littoralis_Contig1162.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig1162:60300..60854- (Pylaiella littoralis U1_48)
GAGGCCATTACGTACGGGATTGAGATTGACAAACCAGCTCTCGTGTCCAT
CGTGTGGCTACTGGCGCTGAGCTTCGTCGGGATTTCGTGGTCGGTCTACC
TACGCTCCACCATCGGCATGACGTTTACGACAGGTACCTGATCGACCAGT
AGTTTCGATTTTTTCATAGACATCCATCTCCTTTTCGTTGCCCACTCAAG
GCAGCGAAGTCGCTTGCAGTCGCGACCCGTGCATGCACCTCAGGACCGTT
TTGCATGCCACACATCGCCACAGTTACAATACCTGGTTTATAGCGCGCAT
CAGGCAGCGGGGTGCCTTGAGAGCCACTGCCAGTTTCGATCCGCTATCAC
TACCGCTGTCGTTACTAGTCTTCACATCCGTCGCTCGTCAGGCGTATCAC
CTTGCCAGTATCGCAGGCACTACTAGCGCACTGACACGCTGATCGTGCCC
GCCCGCCCGCCTTTCCACCCGCGCCCTGCCCACAGGGACCAGCTGTTACG
CGCAGTTTCCCTCCAAGCACAGGGCCTCCCCGACGACCCCAAGAGGCACG
CAGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1162:60300..60854-

>mRNA_P-littoralis_Contig1162.15.1 ID=mRNA_P-littoralis_Contig1162.15.1|Name=mRNA_P-littoralis_Contig1162.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig1162:60300..60854- (Pylaiella littoralis U1_48)
GAGGCCATTACGTACGGGATTGAGATTGACAAACCAGCTCTCGTGTCCAT
CGTGTGGCTACTGGCGCTGAGCTTCGTCGGGATTTCGTGGTCGGTCTACC
TACGCTCCACCATCGGCATGACGTTTACGACAGGGACCAGCTGTTACGCG
CAGTTTCCCTCCAAGCACAGGGCCTCCCCGACGACCCCAAGAGGCACGCA
G
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