mRNA_P-littoralis_Contig63.102.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.102.1
Unique NamemRNA_P-littoralis_Contig63.102.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:474464..476187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size223
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791314.9255562-CDS-P-littoralis_Contig63:474465..4745731680791314.9255562-CDS-P-littoralis_Contig63:474465..474573Pylaiella littoralis U1_48CDSP-littoralis_Contig63 474466..474573 -
1680791314.9692833-CDS-P-littoralis_Contig63:476076..4761871680791314.9692833-CDS-P-littoralis_Contig63:476076..476187Pylaiella littoralis U1_48CDSP-littoralis_Contig63 476077..476187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.102.1prot_P-littoralis_Contig63.102.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 474466..476187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.102.1

>prot_P-littoralis_Contig63.102.1 ID=prot_P-littoralis_Contig63.102.1|Name=mRNA_P-littoralis_Contig63.102.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
GHLRRAPSGAHSCCLDGVCEGNSREARECTYKTFRNQACYDAARSLNVQG
MSVQVRRGKCFEKACQALWPGEA
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mRNA from alignment at P-littoralis_Contig63:474464..476187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.102.1 ID=mRNA_P-littoralis_Contig63.102.1|Name=mRNA_P-littoralis_Contig63.102.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1724bp|location=Sequence derived from alignment at P-littoralis_Contig63:474464..476187- (Pylaiella littoralis U1_48)
GGGCACCTGCGGCGTGCACCAAGCGGAGCTCATAGCTGCTGTCTCGATGG
AGTCTGTGAAGGCAACAGCCGAGAAGCGCGGGAGTGTACGTACAAGACCT
TCCGCAACCAGGTGTGTGAAACAGCTGAGAAATCGAGTGCGTCGGATCAT
CATGATGTGCAGCGTTAGCCGCAGCACATGCATGCACAAAAGCAGAGATC
AGCAGCAGTACTGCTACAACACTCGAAGTACTTCACGAATCGTGCGCTCC
TGTCTGTGTTGACCATTCTCTTGTGTTACCCCGCCTGGTGGTCCCCCAGA
ACACTTCGCACAGCAGCATACAACGGCAGTAGCTTCGCGTCCGAGACATA
TGGGACTACAACACGCATCATACCTGGTAACAAAGACATACCCACACATG
AACCACAAAAAACACACCCAGACACTAAACGCGGTATGATACAAGTACTG
CTGTAGCAGTGCTGTATGCGGTGTGCTGACTGCGGCGTTGTGTGCGTGCA
CGCCGTACTCTCTCCCTTTTCTTCTCTACCTTCACCTCCCTCTGGGATTG
CACGCTCCAGTTTTGAGTATGCATATACTCTACTACCTGTCTTGCAGTCT
CTGTTGCTGCCGTACGTTTGTTGTGCTTTGTGCGGTAATGTGTGTTCGGC
CCTCGCATGGTGTTCTCGATCGCTTTCTCTCTCTTTATATTCATTTCGTG
TGCTGTTTGTCTGCCGTAGCAGTATATCTGCTGCCGAGAGAGACAGGGAG
AGAGAGAGAGCGAGGGCATACCTGTGTGCGTGATTCGCATCAATGTTGTG
TGCTGGTCGCTACAGGAGTACGTACTGCGATTCGCTGTGTATTCGTGTTT
GCTTTCGACTGATGCCGCTGTCCTGCGCTCTGCCTGTGTGCTGCTTCGGT
ACTGCGGCCCGATGGGCCCCTATAAACCTATAAACCTACGTCTGTGCCTG
CTGTCTTGTTTGCCGTTGACCTTATCCCTTTGTTATTTGTGCTCTATGTC
CAAAGAAGTGGTCGGCAGGCATTATTGCAGGGTTTCTGGTGTTTAGTTGC
CAAGGCGTTATGGCAGGTGCAGCAAGTGCAGATAGGGGCTGCCTAAAAAT
ATATCTTCTGCCAAGTCATTTCAAACCTTCACGCCTGTGGGTGCACCCTA
CTTGTCTCTGCGCGAAAAGTATCGTGATGGAACAGCGTAACCTCAAATAG
CCTCTACCCCACGACGGCGGTAACCAACCGCCTGCAGCCAACGCGGCGCA
CTTTTCACTGGCGGCAGGTCGTTAGTTCGGTGATTATTATGTTTCCTGCT
TCCACATGCACCATGACCAAGATTCGTTATCGGGGACGACACCACGGTCT
CCTCCACTTTGTACGAATTTCGATACGCCTCCACTACCAATAATCCACCA
GCAATTTCCCTCTGAATGTAACATTTTAGAATCATTGTTAAATACGAATT
AGGTTTGAGATGAATCCCCCGCATGATGTCAATTTATAGTACTTATTTTT
GTCAGAGGATGTTTTGCGCAAGATTTAATCATTTTTGCGCTGACGGCCTG
CACTTCAAAGCCGCGCCCTACCACAACACCCGACACTTTCTTCACCCTGC
ATGATTTTAAACAGGCGTGCTACGATGCGGCGCGTTCTCTGAATGTCCAA
GGCATGAGTGTACAAGTTCGTCGCGGTAAATGCTTCGAAAAGGCATGCCA
GGCACTTTGGCCCGGAGAAGCTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:474464..476187-

>mRNA_P-littoralis_Contig63.102.1 ID=mRNA_P-littoralis_Contig63.102.1|Name=mRNA_P-littoralis_Contig63.102.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig63:474464..476187- (Pylaiella littoralis U1_48)
GGGCACCTGCGGCGTGCACCAAGCGGAGCTCATAGCTGCTGTCTCGATGG
AGTCTGTGAAGGCAACAGCCGAGAAGCGCGGGAGTGTACGTACAAGACCT
TCCGCAACCAGGCGTGCTACGATGCGGCGCGTTCTCTGAATGTCCAAGGC
ATGAGTGTACAAGTTCGTCGCGGTAAATGCTTCGAAAAGGCATGCCAGGC
ACTTTGGCCCGGAGAAGCT
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