mRNA_P-littoralis_Contig63.80.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig63.80.1 vs. uniprot
Match: D7FI52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI52_ECTSI) HSP 1 Score: 224 bits (571), Expect = 6.880e-67 Identity = 126/169 (74.56%), Postives = 138/169 (81.66%), Query Frame = 3
Query: 54 MIRKVARAALTTRGRMAGVSSASLTRSSXXXXXXXXXNSCSSRRSFSDNVTYSGGQAGVQGGFYGAGGARSQASPLAHHRPEAIAAVDDINRLREAMQHVSEMEVELGRLGDKVSSRSIELKSTLKKRLSAPSMVELLNRLEINNQPVWGLTQEERELVKVAREKVNSC 560
MI++VARAA T A +S + S SSRR+FSDNVTYSGGQAGVQGGFYGAGGARSQASP AHHRPEAIAAVDDI RLREAMQHVSEME+ELGRLGDKVS RSIELKS +KKRLS+P+M+ELL RL+I +QPVWGLTQEERELVKVAREKVNSC
Sbjct: 1 MIQRVARAAATRGWAAAATTSVGAS-------------SGSSRRAFSDNVTYSGGQAGVQGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLKIKDQPVWGLTQEERELVKVAREKVNSC 156
BLAST of mRNA_P-littoralis_Contig63.80.1 vs. uniprot
Match: A0A835YHU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU4_9STRA) HSP 1 Score: 152 bits (385), Expect = 5.510e-40 Identity = 76/122 (62.30%), Postives = 100/122 (81.97%), Query Frame = 3
Query: 195 DNVTYSGGQAGVQGGFYGAGGARSQASPLAHHRPEAIAAVDDINRLREAMQHVSEMEVELGRLGDKVSSRSIELKSTLKKRLSAPSMVELLNRLEINNQPVWGLTQEERELVKVAREKVNSC 560
DNVTYSGGQ G QGGFYG+GGARS+A+P HHRPEA+A+ +DI RL+ M+ V ME EL + + +++R+IE+K LKK LS+P+M+ELLNRLEI ++PVWGLTQ+ER+LV+ AR KVN+C
Sbjct: 31 DNVTYSGGQEGTQGGFYGSGGARSKAAPNLHHRPEAVASQEDIERLKAVMEDVMGMESELAK-ANSLNARTIEIKGNLKKTLSSPAMMELLNRLEIQSEPVWGLTQKERDLVRSARRKVNTC 151
BLAST of mRNA_P-littoralis_Contig63.80.1 vs. uniprot
Match: A0A835Z526_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z526_9STRA) HSP 1 Score: 140 bits (354), Expect = 5.870e-36 Identity = 74/123 (60.16%), Postives = 93/123 (75.61%), Query Frame = 3
Query: 192 SDNVTYSGGQAGVQGGFYGAGGARSQASPLAHHRPEAIAAVDDINRLREAMQHVSEMEVELGRLGDKVSSRSIELKSTLKKRLSAPSMVELLNRLEINNQPVWGLTQEERELVKVAREKVNSC 560
SDNVTYSGGQ GVQGGFYG+GGAR++A HHRPEA+AA++DI RL A+ +++ +IE+KSTLKK LS+P+M+ELLNRLEIN +PVWGLTQ ERE+V+ AR KVN+C
Sbjct: 4 SDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLS-AIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 125
BLAST of mRNA_P-littoralis_Contig63.80.1 vs. uniprot
Match: A0A7S2IEF3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEF3_9STRA) HSP 1 Score: 122 bits (306), Expect = 7.040e-29 Identity = 65/124 (52.42%), Postives = 89/124 (71.77%), Query Frame = 3
Query: 192 SDNVTYSGGQAGV-QGGFYGAGGARSQASPLAHHRPEAIAAVDDINRLREAMQHVSEMEVELGRLGDKVSSRSIELKSTLKKRLSAPSMVELLNRLEINNQPVWGLTQEERELVKVAREKVNSC 560
SDN+TYSGGQA QGGFYG+GG+R+ +P + HRPE A +D+ +L M V +E L + +V+SRSIEL+ ++KK +++P +++ LNRLEI +PVWGLT EER+LVK AR KVN C
Sbjct: 34 SDNITYSGGQATEGQGGFYGSGGSRASLTPASEHRPEMQAIAEDVTKLSSIMGEVETLE-HLLQSETEVTSRSIELRGSIKKLMTSPDVMDCLNRLEIQGEPVWGLTVEERDLVKFARSKVNEC 156
BLAST of mRNA_P-littoralis_Contig63.80.1 vs. uniprot
Match: A0A6S9H6B1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9H6B1_9STRA) HSP 1 Score: 114 bits (284), Expect = 9.390e-26 Identity = 59/128 (46.09%), Postives = 89/128 (69.53%), Query Frame = 3
Query: 192 SDNVTYSGGQAGV-QGGFYGAGGARSQASPLAHHRPEAIAAVDDINRLREAMQHVSEMEVELGRLGDK----VSSRSIELKSTLKKRLSAPSMVELLNRLEINNQPVWGLTQEERELVKVAREKVNSC 560
S+N+TYSGGQA QGG+YG+GG+R+ +P + HRPE +A D+ + M V +E L ++ ++SRSIEL+ ++KK +++P ++E LNRLEI +PVWGL+ +ER+LVK+AR K+N C
Sbjct: 38 SNNITYSGGQATEGQGGYYGSGGSRASLTPASEHRPEMLALAADVQTISSIMVEVEMLENLLQSETEENQGAITSRSIELRGSIKKLMTSPDVMECLNRLEIQGEPVWGLSSDERDLVKLARSKINEC 165
BLAST of mRNA_P-littoralis_Contig63.80.1 vs. uniprot
Match: A0A4D9CV18_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV18_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.060e-24 Identity = 65/122 (53.28%), Postives = 83/122 (68.03%), Query Frame = 3
Query: 198 NVTYSGGQA-GVQGGFYGAGGARSQASPLAHHRPEAIAAVDDINRLREAMQHVSEMEVELGRLGDKVSSRSIELKSTLKKRLSAPSMVELLNRLEINNQPVWGLTQEERELVKVAREKVNSC 560
++TYSGGQA QGGFYGAGGAR+ + HRPEA+A DI LR M+ V E+EV+L R D++ + I +KS +KK+ S M ELL RLE+ QPVWGL+ ER+LVK AR + NSC
Sbjct: 44 SITYSGGQATSGQGGFYGAGGARANKTQT-KHRPEAVAHAADIKSLRMLMEEVEELEVQL-RSADELP-KQISIKSAIKKKASGRDMTELLKRLELKGQPVWGLSVSERDLVKEARRRFNSC 162
BLAST of mRNA_P-littoralis_Contig63.80.1 vs. uniprot
Match: A0A7S2R7N6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7N6_9STRA) HSP 1 Score: 106 bits (264), Expect = 7.340e-23 Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = 3
Query: 198 NVTYSGGQAGV-QGGFYGAGGARSQASPLAHHRPEAIAAVDDINRLREAMQHVSEMEVELGRL----GDKVSSRSIELKSTLKKRLSAPSMVELLNRLEINNQPVWGLTQEERELVKVAREKVNSC 560
++TYSGG A QGGFYG+GGAR+ H PEAI + DI L + M V+ +E +L G V+ +SIELK+ +K+++S+ +M +LL+RLEIN P WGL+ +ER+LV +AR+K N+C
Sbjct: 55 SITYSGGHASDGQGGFYGSGGARAGKEGQIAHHPEAIVELQDIRLLEQVMSEVATLEDQLATSMATHGSSVNEQSIELKAAIKRKMSSKAMAQLLDRLEINGTPRWGLSTKERKLVNLARDKFNAC 180
BLAST of mRNA_P-littoralis_Contig63.80.1 vs. uniprot
Match: A0A7S3UYX7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYX7_HETAK) HSP 1 Score: 103 bits (257), Expect = 1.170e-21 Identity = 57/125 (45.60%), Postives = 83/125 (66.40%), Query Frame = 3
Query: 195 DNVTYSGGQAGV-QGGFYGAGGARS--QASPLAHHRPEAIAAVDDINRLREAMQHVSEMEVELGRLGDKVSSRSIELKSTLKKRLSAPSMVELLNRLEINNQPVWGLTQEERELVKVAREKVNSC 560
+N+TYSGGQA QGGFYG+G R+ QA R A+AA++D+ +LR M V ++ +L ++ S R+++ ++TLKK L++ EL+ RL +N QPVWGLTQ ERELV+ +E +NSC
Sbjct: 79 NNITYSGGQATTGQGGFYGSGATRAAAQARDRFEQRAGALAALEDVAQLRALMDQVEALDADLRAQEEQGSPRAVQTRATLKKLLTSARTTELMKRLMMNGQPVWGLTQSERELVRSVQEAINSC 203
BLAST of mRNA_P-littoralis_Contig63.80.1 vs. uniprot
Match: A0A1Z5KRA7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRA7_FISSO) HSP 1 Score: 101 bits (252), Expect = 1.650e-21 Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = 3
Query: 198 NVTYSGGQAGV-QGGFYGAGGARSQASPLAHH---RPEAIAAVDDINRLREAMQHVSEMEVEL-GRLGDKVSSRSIELKSTLKKRLSAPSMVELLNRLEINNQPVWGLTQEERELVKVAREKVNSC 560
++TYSGGQ QGGFY +GGARS A R IA D+ ++ + M V +E +L G V+S+SIELKS +KK ++ PS++E LNRLE+ QPVWGL+ EERE++ +AREKVN+C
Sbjct: 34 SITYSGGQPTEGQGGFYASGGARSNVDDYASDDETRGRMIALSQDVEKIEQVMTAVESLESQLLDNAG--VNSKSIELKSAIKKLMTDPSVLESLNRLELEGQPVWGLSTEEREMIIMAREKVNAC 157
BLAST of mRNA_P-littoralis_Contig63.80.1 vs. uniprot
Match: A0A7S3PD71_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD71_9STRA) HSP 1 Score: 100 bits (250), Expect = 8.340e-21 Identity = 61/131 (46.56%), Postives = 87/131 (66.41%), Query Frame = 3
Query: 183 RSF-SDNVTYSGGQAGV-QGGFYGAGGAR--SQASPLAHHRPEAIAAVDDINRLREAMQHVSEMEVELGRLG-DKVSSRSIELKSTLKKRLSAPSMVELLNRLEINNQPVWGLTQEERELVKVAREKVNSC 560
RSF + +VTYSGGQ QGGFYG+GGAR S + + R + +A D+ + M + +E EL G D VS +S+ELKS++KK ++AP + E L+RLEI +PVWGL+ +ERE++ +AREK+N C
Sbjct: 65 RSFGTGSVTYSGGQPTEGQGGFYGSGGARVISSSEVDSEGRQKVLAFAADVEMISAVMDELYALESELREQGADSVSKKSLELKSSIKKLMTAPEVSEALDRLEIQGEPVWGLSTDEREMIVLAREKMNEC 195 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig63.80.1 >prot_P-littoralis_Contig63.80.1 ID=prot_P-littoralis_Contig63.80.1|Name=mRNA_P-littoralis_Contig63.80.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp MIRKVARAALTTRGRMAGVSSASLTRSSAAAASSSSGNSCSSRRSFSDNVback to top mRNA from alignment at P-littoralis_Contig63:393834..397060- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig63.80.1 ID=mRNA_P-littoralis_Contig63.80.1|Name=mRNA_P-littoralis_Contig63.80.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3227bp|location=Sequence derived from alignment at P-littoralis_Contig63:393834..397060- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig63:393834..397060- >mRNA_P-littoralis_Contig63.80.1 ID=mRNA_P-littoralis_Contig63.80.1|Name=mRNA_P-littoralis_Contig63.80.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig63:393834..397060- (Pylaiella littoralis U1_48)back to top |