mRNA_P-littoralis_Contig1162.1.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1162.1.3
Unique NamemRNA_P-littoralis_Contig1162.1.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1162.1.3 vs. uniprot
Match: D7G1C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C6_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.600e-19
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 3 
Query:  774 WDGKTAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPEKEAAQPCAAVPAALKDF*GRLHK-RGVDSSRHPD 1067
            +D +   + D+++GCTG I  G+LVVKDW +PPLHL+C+KREWRK +   +++K+  +DL +T ++EAAQP A VPA L  F  R    +G   S  P+
Sbjct:   57 YDPEQPAAIDLDSGCTGVIADGDLVVKDWDEPPLHLLCAKREWRKTVISILRKKQQLRDLDSTEKQEAAQPSAEVPANLVFFLQRCSSYQGKTLSNSPE 155
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BLAST of mRNA_P-littoralis_Contig1162.1.3 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 8.380e-17
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 3 
Query:  759 KRCLCWDGKTAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPEKEAAQPCA 992
            + C C +  + V +DI  GCTG+I+ G+ VVKDW+DPPLHL C+KR WR  +D  +  K++ +D+GTT +KE+AQP A
Sbjct:  144 RACKCSNPASDV-EDITHGCTGEIEEGDYVVKDWIDPPLHLHCAKRLWRAKVDEILTSKQNLKDIGTTAQKESAQPSA 220
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BLAST of mRNA_P-littoralis_Contig1162.1.3 vs. uniprot
Match: A0A6H5K6X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X3_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-13
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 3 
Query:  759 KRCLCWDGKTAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPEKEAAQPCA 992
            + C C D +T V +DI  G TG ++ G  VVK W DPPL L C+KR WR  +D  +  K++ +D+GTT EKE+AQP A
Sbjct:   51 RACKCSDPETNV-EDITDGYTGYMEEGAYVVKGWSDPPLPLHCAKRLWRAKVDEILACKQNLKDIGTTAEKESAQPSA 127
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BLAST of mRNA_P-littoralis_Contig1162.1.3 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.510e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:   17 HPHGCQLCLCDVGGYPSIGIPTDEKDDRGYTVWENYHGVFSHCAGARSRDGKTFKNATVASGDIVG 214
            +P  C+LCL  VGG PS+G+ + EK D+G   W N H V+  CAGA + DG  +KNAT+A+G+IVG
Sbjct:   78 NPVKCELCLTPVGGTPSLGVLSGEKTDQGRGEWLNIHAVWKLCAGATTSDGGKYKNATLATGEIVG 143
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BLAST of mRNA_P-littoralis_Contig1162.1.3 vs. uniprot
Match: D7FZU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU8_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.000e-11
Identity = 32/80 (40.00%), Postives = 55/80 (68.75%), Query Frame = 3 
Query:  735 PSSIRK*QKRCLCWDGKTAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPEKE 974
            P++ ++  K C+  D +  ++ D+ TGCTG I  G+LV+KDW DPPLH  C++R W++++   ++ KK  +++GTT E+E
Sbjct:   36 PTTKKRIGKSCVRAD-ENNIADDLQTGCTGIISEGDLVIKDW-DPPLHFYCARRLWKESVTQTLKAKKIIKEIGTTEEEE 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1162.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G1C6_ECTSI6.600e-1945.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXZ5_9PHAE8.380e-1750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X3_9PHAE1.340e-1348.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP4_9PHAE6.510e-1251.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZU8_ECTSI1.000e-1140.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1162contigP-littoralis_Contig1162:11211..13478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1194
Hectar predicted targeting categoryother localisation
Exons3
Cds size753
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789483.2224152-UTR-P-littoralis_Contig1162:11210..113201680789483.2224152-UTR-P-littoralis_Contig1162:11210..11320Pylaiella littoralis U1_48UTRP-littoralis_Contig1162 11211..11320 +
1680789483.23116-UTR-P-littoralis_Contig1162:11531..118171680789483.23116-UTR-P-littoralis_Contig1162:11531..11817Pylaiella littoralis U1_48UTRP-littoralis_Contig1162 11532..11817 +
1680789483.2666192-UTR-P-littoralis_Contig1162:13433..134781680789483.2666192-UTR-P-littoralis_Contig1162:13433..13478Pylaiella littoralis U1_48UTRP-littoralis_Contig1162 13434..13478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789483.2398038-CDS-P-littoralis_Contig1162:11817..124441680789483.2398038-CDS-P-littoralis_Contig1162:11817..12444Pylaiella littoralis U1_48CDSP-littoralis_Contig1162 11818..12444 +
1680789483.2499568-CDS-P-littoralis_Contig1162:13307..134331680789483.2499568-CDS-P-littoralis_Contig1162:13307..13433Pylaiella littoralis U1_48CDSP-littoralis_Contig1162 13308..13433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1162.1.3prot_P-littoralis_Contig1162.1.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1162 11818..13433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1162.1.3

>prot_P-littoralis_Contig1162.1.3 ID=prot_P-littoralis_Contig1162.1.3|Name=mRNA_P-littoralis_Contig1162.1.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=251bp
MPLHCTCLLPPASACPSRSPFISLAVVDGDVIGVSCTVACSLRYHDRRAV
FLSRDKEDLPPSIFPFSFICRFYPMSFKTAAPAYFCYHNYVRRNFVPLSP
SPFALPSRSPFISLPQSENNRRGACAGTERPPSPRTSTLGAPARSRPGSS
WSRTGWTPPCTSSAPSASGGRLSTTTFSRRRTSRTSAPHPRRKRPSPALP
SRRLSRTSEGDSTSAESTPRDTLMTVSRCAERVGQLRGCVVLYLELPACP
*
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mRNA from alignment at P-littoralis_Contig1162:11211..13478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1162.1.3 ID=mRNA_P-littoralis_Contig1162.1.3|Name=mRNA_P-littoralis_Contig1162.1.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2268bp|location=Sequence derived from alignment at P-littoralis_Contig1162:11211..13478+ (Pylaiella littoralis U1_48)
GCTCGCCAGCAAGGATCACCCGCACGGCTGCCAGCTGTGCCTGTGTGACG
TCGGGGGCTACCCTTCCATTGGTATCCCCACAGACGAGAAGGACGACCGT
GGCTACACCGGTGAGAGGTTGTTTCGTCCCGTTTTTCCGTCGAGGTCACG
CTGTACTGCCACCAGCACCTTTCCCATGAATCTGTTGCTTTTTTTTTTCA
TGCCTCGCACAATTTTTCAAGGTCACGCTGTATCGCCACCAGCACCTTTC
CCATGAATCTGTTGCTTTTTTCATGCTGCTTTTCTCGTGTTTGTCCCGTT
CGGTACACATATTTTTGGCAGTGTGGGAGAACTACCACGGCGTCTTCTCG
CACTGCGCAGGAGCCAGGAGCCGCGACGGCAAAACCTTCAAGAACGCAAC
CGTCGCTAGCGGTGACATCGTCGGCGTAAGTTGAACGGTTGTATGTCATG
TCCGCCATGATGACCGTCGTATATGCTGTTTTTTGTCATGTGATAAAGAT
ACCTGCCCCCGTCTGTTTTTCCATTTTCTTTTTATATGCTGCTTTTACCC
ATGTAGTTAAAAAGAACAAAGAGCCGTCCCCGTGTATTATTTTTATAGTA
ACTACGTATGCCGTTACACTGTACCTGTCTTCTTCCTCCCGCTTCCGCCT
GCCCCTCCCGCTCTCCATTTATTTCCCTCGCCGTCGTTGACGGTGACGTC
ATCGGCGTTAGTTGTACGGTTGCATGTTCTCTCCGATATCATGACCGTCG
TGCTGTTTTTTTGTCGCGTGATAAAGAAGACCTGCCCCCGTCTATTTTTC
CGTTTTCTTTTATATGCCGTTTTTATCCCATGTCGTTCAAAACAGCCGCC
CCAGCCTATTTCTGTTATCATAATTACGTGCGCCGTAACTTTGTACCTCT
CTCTCCCTCCCCCTTCGCCCTTCCCTCCCGCTCTCCCTTTATTTCCCTTC
CTCAATCCGAAAATAACAGAAGAGGTGCCTGTGCTGGGACGGAAAGACCG
CCGTCTCCAAGGACATCAACACTGGGTGCACCGGCAAGATCAAGGCCGGG
GAGCTCGTGGTCAAGGACTGGGTGGACCCCCCCCTGCACCTCGTCTGCTC
CAAGCGCGAGTGGAGGAAGGCTATCGACCACCACGTTCAGCAGAAGAAGG
ACTTCCAGGACCTCGGCACCACACCCGAGAAGGAAGCGGCCCAGCCCTGC
GCTGCCGTCCCGGCGGCTCTCAAGGACTTCTGAGGTACGATCTGTATCTG
ATTATACCGGGCTAACGCTCCCCTCAAACATACAACGAAACCTCAAAATA
ACTTAATGGAACTTGATCTATCGAGCAGCGATTCGGAAACTGACGTCATA
GTGCCAAATGACGCTGCAGCTCAGCGTAGAAGCAGGCGCGCAGCTTTAAT
AGCAGATCGACGATCCAGAGGTGAAATTCGAAACATACAACATCAAATCC
GCAACAATACATGTCATCGCAGAAGCAGGCGCGCTGCCATTATCGCCGCA
CGTCGCGCATCCGGTCAAATTCGCATTCACGCCGCCAACGATACATCACC
ACCATCTCTCCCTCCTTCCCCTAATCCTCCACCGCCTACTTTACCTCCTC
CACCACCACAACCTGTATGGACTGTTCAGCATGAGATTGGTGACGGAGCT
TGCGGCTTTCGAGCAATTGCTAGACGTTTCCTCGGTGATCCTGAGTTGCA
CTTACAAGCACGAAATCAAATTGCACTGTACCTTGCACACAACAGTCAGG
ACGACAACCTACACATCCACGACGGCATTAACACAGAACTTCTTTACTGT
TCAGGTTCACCGCCCTCTACATACTCCTCTTACGACGACTACCTCTTAAG
AATGTCCATGCCTACCACGTACATGGGCCAACCCGAAATTACTGCTGCCA
TCGCAGTCTATGGAACCCCTATGATTCCATACTTCCAAAGTTCAACCTTA
CCGCACCCAGCCATCGCTGATCTCAATGAACTTCATTTAAGGTTCACATG
TGTCTCACGTCATTGCGACACCTTCACCCTATCAAACCCTGCCGCTCACT
CCTAACATGACCCGTTACGATTCAACGGTCCACTATTTCCTGTTCAGGGC
GACTCCACAAGCGCGGAGTCGACTCCTCGCGACACCCTGATGACGGTCTC
ACGGTGTGCTGAAAGGGTCGGGCAACTTCGGGGCTGTGTCGTTCTGTACC
TGGAACTACCTGCTTGCCCATAGATACAACCACCAGGCGTGCCGCACGAC
GTCTACGTGGACTATATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1162:11211..13478+

>mRNA_P-littoralis_Contig1162.1.3 ID=mRNA_P-littoralis_Contig1162.1.3|Name=mRNA_P-littoralis_Contig1162.1.3|organism=Pylaiella littoralis U1_48|type=CDS|length=753bp|location=Sequence derived from alignment at P-littoralis_Contig1162:11211..13478+ (Pylaiella littoralis U1_48)
ATGCCGTTACACTGTACCTGTCTTCTTCCTCCCGCTTCCGCCTGCCCCTC
CCGCTCTCCATTTATTTCCCTCGCCGTCGTTGACGGTGACGTCATCGGCG
TTAGTTGTACGGTTGCATGTTCTCTCCGATATCATGACCGTCGTGCTGTT
TTTTTGTCGCGTGATAAAGAAGACCTGCCCCCGTCTATTTTTCCGTTTTC
TTTTATATGCCGTTTTTATCCCATGTCGTTCAAAACAGCCGCCCCAGCCT
ATTTCTGTTATCATAATTACGTGCGCCGTAACTTTGTACCTCTCTCTCCC
TCCCCCTTCGCCCTTCCCTCCCGCTCTCCCTTTATTTCCCTTCCTCAATC
CGAAAATAACAGAAGAGGTGCCTGTGCTGGGACGGAAAGACCGCCGTCTC
CAAGGACATCAACACTGGGTGCACCGGCAAGATCAAGGCCGGGGAGCTCG
TGGTCAAGGACTGGGTGGACCCCCCCCTGCACCTCGTCTGCTCCAAGCGC
GAGTGGAGGAAGGCTATCGACCACCACGTTCAGCAGAAGAAGGACTTCCA
GGACCTCGGCACCACACCCGAGAAGGAAGCGGCCCAGCCCTGCGCTGCCG
TCCCGGCGGCTCTCAAGGACTTCTGAGGGCGACTCCACAAGCGCGGAGTC
GACTCCTCGCGACACCCTGATGACGGTCTCACGGTGTGCTGAAAGGGTCG
GGCAACTTCGGGGCTGTGTCGTTCTGTACCTGGAACTACCTGCTTGCCCA
TAG
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