mRNA_P-littoralis_Contig63.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.46.1
Unique NamemRNA_P-littoralis_Contig63.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig63.46.1 vs. uniprot
Match: D7FI46_ECTSI (p38 Map Kinase family member (Pmk-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI46_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.030e-21
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:   10 GGAIVATKMGDRIACGGRGEIFELEIVDRRVEDRFRKSGLGDGLVVKTLIKPLSEDDDDGVEAALREIEVLGSFMPRCHPNIINVFSTSVISRSV 294
            GG +VAT+ G  +  GG G +F+L+IVD +++  F ++GLG GLV+KTL KP     D G    +REI VL SFMP CH NI+NVF+T+V +RS+
Sbjct:  853 GGGMVATEKGRVLGDGGGGNVFDLKIVDEQLQGHFARTGLGQGLVLKTLNKPAKGHKDTG----MREIRVLASFMPACHTNIVNVFATNVETRSI 943
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BLAST of mRNA_P-littoralis_Contig63.46.1 vs. uniprot
Match: A0A6H5KSE9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.990e-20
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 DSRGGAIVATKMGDRIACGGRGEIFELEIVDRRVEDRFRKSGLGDGLVVKTLIKPLSEDDDDGVEAALREIEVLGSFMPRCHPNIINVFSTSVISRSV 294
            DS  G +VAT+ G ++  GG GE+F+L+I D +++ +F  +G+G GLV+KTL KP     D G+    REI +L SFMP CHPNI NVF+T++ +RS+
Sbjct:  919 DSAAG-VVATEKGVKLGEGGGGEVFDLKIADEQLQGQFAAAGVGRGLVLKTLKKPKKGKRDTGI----REIRMLASFMPTCHPNITNVFATNIATRSI 1011
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BLAST of mRNA_P-littoralis_Contig63.46.1 vs. uniprot
Match: D7FI62_ECTSI (Protein tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI62_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.220e-19
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   19 IVATKMGDRIACGGRGEIFELEIVDRRVEDRFRKSGLGDGLVVKTLIKPLSEDDDDGVEAALREIEVLGSFMPRCHPNIINVFSTSVISRSV 294
            +VAT+ G ++  GG G +F+L+I D +++ +F  +G+G GLV+KTL KP     D G    +REI +L SFMP CHPNI NVF+T++ +RS+
Sbjct:  766 VVATEKGAKLGEGGGGGVFDLKIADEQLQGQFAAAGVGQGLVLKTLKKPKKGTRDTG----MREIRMLASFMPTCHPNITNVFATNIATRSI 853
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI46_ECTSI3.030e-2150.53p38 Map Kinase family member (Pmk-1) n=1 Tax=Ectoc... [more]
A0A6H5KSE9_9PHAE4.990e-2047.96Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FI62_ECTSI3.220e-1946.74Protein tyrosine kinase n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:248557..249612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FI62
PFAMsPkinase
Model size297
Max annot lvl2759|Eukaryota
KEGG koko:K02836,ko:K08818,ko:K10772
KEGG Pathwayko03410,map03410
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.27e-20
EggNOG OGsKOG0663@1|root,KOG0663@2759|Eukaryota
EC2.7.11.22,4.2.99.18
Descriptioncyclin-dependent protein serine/threonine kinase activity
Cds size294
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03012,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791312.406855-CDS-P-littoralis_Contig63:248557..2486241680791312.406855-CDS-P-littoralis_Contig63:248557..248624Pylaiella littoralis U1_48CDSP-littoralis_Contig63 248558..248624 -
1680791312.4212024-CDS-P-littoralis_Contig63:249076..2491411680791312.4212024-CDS-P-littoralis_Contig63:249076..249141Pylaiella littoralis U1_48CDSP-littoralis_Contig63 249077..249141 -
1680791312.4335203-CDS-P-littoralis_Contig63:249450..2496121680791312.4335203-CDS-P-littoralis_Contig63:249450..249612Pylaiella littoralis U1_48CDSP-littoralis_Contig63 249451..249612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.46.1prot_P-littoralis_Contig63.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 248558..249612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.46.1

>prot_P-littoralis_Contig63.46.1 ID=prot_P-littoralis_Contig63.46.1|Name=mRNA_P-littoralis_Contig63.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
DSRGGAIVATKMGDRIACGGRGEIFELEIVDRRVEDRFRKSGLGDGLVVK
TLIKPLSEDDDDGVEAALREIEVLGSFMPRCHPNIINVFSTSVISRSV
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mRNA from alignment at P-littoralis_Contig63:248557..249612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.46.1 ID=mRNA_P-littoralis_Contig63.46.1|Name=mRNA_P-littoralis_Contig63.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1056bp|location=Sequence derived from alignment at P-littoralis_Contig63:248557..249612- (Pylaiella littoralis U1_48)
GACAGCAGAGGCGGTGCGATAGTGGCTACCAAGATGGGGGATAGGATCGC
GTGTGGGGGGCGCGGAGAGATCTTCGAGTTGGAGATCGTGGACAGGCGGG
TTGAGGACCGATTCCGGAAGTCCGGCCTGGGAGACGGTCTCGTGGTGAAG
ACGCTCATAAAGGCGAGACACACTTTCCACTGCATTTGTTTGGGGCCGAT
TGAACGCGTTCGTTTCGTTGGCGTTGCAGTTGGTAGCGAATACAATTGCG
GAGATCTTTTTATTCGTTTATGTTGCTGTTGCGGCGATGTGATTTATTGA
GTGCCGAGAGAGAAATTCAAAAGGCAAGAGACACGAGCACTGCCGAATGG
TGCTGACAAACACACGAACTCGCGTGTCGTCGCCTCCCTCTCCCCCCTCT
TACCCCCGTTTCCACGCCCCTCGTACTCCCCTTCCCCCGACGCCGTCCTG
GCGAACGGGCGCAAATTTCAGCCGCTTAGCGAGGACGACGACGACGGAGT
AGAAGCCGCTCTGAGGGAAATCGAGGTCCTAGGGAGGTAGGGTAGCCAGG
CCGTAACTCTTCAGCGTTGGACATAATGTTTCGTGCCAGCTACAAGCATG
AGTACTCAAACCTGCCCTACTTGAGATGAAAAAAACGCACCTCTTCGGAC
AGACGGTTGCAAGTAGCTTCCAAAATTGAGCCCTAGCAGAACAGAGTTTG
TGCGTTTCTACGTGCGTGCGTGGTTAGGCTTGTACTAGTACGATATGAGA
ATGCGTAAAACTTGATGGACCTCCGGCTTTCAATGACAAAGGTGATACCT
GCACCACCACAGAACTACCAATGGAAACCAAAAACTTTCCCGGGCAGATC
GGTGAGCGGTGCGACGTGTAGTGCTGTAGCACACTGCAGGCCCTTCCTTC
GTCACCCGCCCTTCAATATCCCCTCCTCGCCTCGCCCTGCCCCGCCCGCC
CCCCGCTTCGTACGCCGGTGTTCTGCGGTGGTCGACAGTTTCATGCCTCG
CTGTCACCCAAACATCATCAACGTCTTCTCGACCAGCGTCATATCCCGGA
GCGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:248557..249612-

>mRNA_P-littoralis_Contig63.46.1 ID=mRNA_P-littoralis_Contig63.46.1|Name=mRNA_P-littoralis_Contig63.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig63:248557..249612- (Pylaiella littoralis U1_48)
GACAGCAGAGGCGGTGCGATAGTGGCTACCAAGATGGGGGATAGGATCGC
GTGTGGGGGGCGCGGAGAGATCTTCGAGTTGGAGATCGTGGACAGGCGGG
TTGAGGACCGATTCCGGAAGTCCGGCCTGGGAGACGGTCTCGTGGTGAAG
ACGCTCATAAAGCCGCTTAGCGAGGACGACGACGACGGAGTAGAAGCCGC
TCTGAGGGAAATCGAGGTCCTAGGGAGTTTCATGCCTCGCTGTCACCCAA
ACATCATCAACGTCTTCTCGACCAGCGTCATATCCCGGAGCGTC
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