mRNA_P-littoralis_Contig63.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.42.1
Unique NamemRNA_P-littoralis_Contig63.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig63.42.1 vs. uniprot
Match: A0A6H5J6R4_9PHAE (NAC-A/B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6R4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.440e-10
Identity = 50/105 (47.62%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:   82 SEVSNDELRAADRAHAAAWTSSREGAEDAAESGGEHGE------------------AWLLEQNAXXXXXLEAKDELIEALREQLKDIQTQQRRGQGPRPVSSMQS 342
            SEVSNDELRAADR HA+A    R   E+  ES G+ G                   AWLLEQN      LEAKD+ I+ALREQ++ +Q  +R G GP P SSM S
Sbjct:  269 SEVSNDELRAADRVHASAL---RARIEEKGESDGDGGPGGREXXXXXXXXXXXQDVAWLLEQNTWLIQELEAKDDFIQALREQMEQLQ--RREGHGPGPSSSMHS 368
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BLAST of mRNA_P-littoralis_Contig63.42.1 vs. uniprot
Match: D7FI48_ECTSI (Nascent polypeptide associated complex alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI48_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 7.290e-9
Identity = 49/100 (49.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:   82 SEVSNDELRAADRAHAAAWTSSREGAEDAAESGG-------------EHGEAWLLEQNAXXXXXLEAKDELIEALREQLKDIQTQQRRGQGPRPVSSMQS 342
            SEV NDELRAADR HA+A    R   E+A ES               E   AWLLEQN      LEAKD+ I+ALREQ++ +Q  +  G GP P SSMQS
Sbjct:  250 SEVWNDELRAADRVHASAL---RARIEEAGESDDXXXXXXXXXXIDDEQDVAWLLEQNTWLMQELEAKDDFIQALREQMEQLQ--RGGGHGPGPSSSMQS 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6R4_9PHAE2.440e-1047.62NAC-A/B domain-containing protein n=1 Tax=Ectocarp... [more]
D7FI48_ECTSI7.290e-949.00Nascent polypeptide associated complex alpha n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:213818..214943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FI48
Preferred nameNACAD
PFAMsNAC
Model size394
Max annot lvl2759|Eukaryota
KEGG rclassRC00672
KEGG koko:K03626,ko:K10659,ko:K15730
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,map00590,map01100
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.19e-09
EggNOG OGsCOG1308@1|root,KOG2239@2759|Eukaryota
EC2.3.2.27,5.3.99.3
Descriptionprotein transport
Cds size393
COG categoryK
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791312.1148896-CDS-P-littoralis_Contig63:213817..2139601680791312.1148896-CDS-P-littoralis_Contig63:213817..213960Pylaiella littoralis U1_48CDSP-littoralis_Contig63 213818..213960 -
1680791312.1279595-CDS-P-littoralis_Contig63:214142..2142871680791312.1279595-CDS-P-littoralis_Contig63:214142..214287Pylaiella littoralis U1_48CDSP-littoralis_Contig63 214143..214287 -
1680791312.1380548-CDS-P-littoralis_Contig63:214838..2149431680791312.1380548-CDS-P-littoralis_Contig63:214838..214943Pylaiella littoralis U1_48CDSP-littoralis_Contig63 214839..214943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.42.1prot_P-littoralis_Contig63.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 213818..214943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.42.1

>prot_P-littoralis_Contig63.42.1 ID=prot_P-littoralis_Contig63.42.1|Name=mRNA_P-littoralis_Contig63.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
SEGAGGEGTSGAGDREEDDEDGDDDDDSEVSNDELRAADRAHAAAWTSSR
EGAEDAAESGGEHGEAWLLEQNAWLMEELEAKDELIEALREQLKDIQTQQ
RRGQGPRPVSSMQSPGGFDLPADSDDSDDSD
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mRNA from alignment at P-littoralis_Contig63:213818..214943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.42.1 ID=mRNA_P-littoralis_Contig63.42.1|Name=mRNA_P-littoralis_Contig63.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1126bp|location=Sequence derived from alignment at P-littoralis_Contig63:213818..214943- (Pylaiella littoralis U1_48)
TCGGAGGGCGCAGGAGGTGAAGGCACGAGCGGCGCCGGTGACCGTGAGGA
AGATGACGAGGATGGTGATGATGATGATGATTCAGAGGTCTCGAATGACG
AGCTGGTGAGACTGTGGTTGAGCTTGTTTTAGAGAAGCGGTGCCCAGCAG
CAGCCGCCGCAGCAGCAGCAGTGATGTGTTTCCGCTCGTTATTTTTCGGG
TGATTTCATGTCTGGAGCGTGGTGATGCTTTAGTACAGCACGTGTGGTAC
AGCGGTGCGTACGTGCGTGATTCTAATCAGCGAGTGGCACCCATGTGTAC
AAGCCCTTTTGTTTGCCCTCGCGCGCACGCACATGGTGATGTTTGGTGCT
CGCCTGGCATTCAAGGCAAAGGAGGCACTTTTTTTTTTGTGGCAGTGACA
GGGAAGACATAGCTTGCAGAGAAAAAGGCGTCATCATCCTATATCATACA
ATGTCTAGTTTCGGCAACGACTAGGCCTGTTCGTTGCATCATACGTGACA
CCTGACTGTGCCCCTCTAAAAACTGCTGTAAACACACGGTCGTATACTTT
TTTCTTTTTATTTATCCACTTCAATACTACTGATTGTAGCCACACCGCGT
AGTACCTTCAAATATTGTGACATTCCCCGCGCTTTGGCTTGTGCCCGAAA
CACCAGCGCGCCGCAGACCGGGCTCACGCCGCAGCGTGGACATCATCACG
TGAGGGGGCTGAGGATGCGGCGGAGTCTGGTGGTGAGCATGGCGAAGCCT
GGCTCCTGGAGCAGAACGCCTGGCTCATGGAAGAGCTAGAAGCCAAGGAC
GGTGAGACATTTTTTTGCTATGATATAGTTCGTTGTTGGCGTGTTGCTAC
CCACAGCAAAGTTGGCGTTGTTGATGAAGCTTTCGCTTGCATTGTTTCAG
TGCTAAGTCTCGATGAAAAACCGGAGACGACAATGGTTGAAATCCATAAC
TTTTTTTTTTTGTCACTGACGCTGCCCCCCCAGAGCTCATCGAGGCTCTA
CGGGAACAGTTGAAGGACATCCAAACACAGCAACGGCGGGGGCAAGGACC
TCGTCCTGTTTCCTCGATGCAGTCACCGGGAGGCTTTGATCTACCCGCCG
ACAGCGACGACAGTGACGATAGTGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:213818..214943-

>mRNA_P-littoralis_Contig63.42.1 ID=mRNA_P-littoralis_Contig63.42.1|Name=mRNA_P-littoralis_Contig63.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig63:213818..214943- (Pylaiella littoralis U1_48)
TCGGAGGGCGCAGGAGGTGAAGGCACGAGCGGCGCCGGTGACCGTGAGGA
AGATGACGAGGATGGTGATGATGATGATGATTCAGAGGTCTCGAATGACG
AGCTGCGCGCCGCAGACCGGGCTCACGCCGCAGCGTGGACATCATCACGT
GAGGGGGCTGAGGATGCGGCGGAGTCTGGTGGTGAGCATGGCGAAGCCTG
GCTCCTGGAGCAGAACGCCTGGCTCATGGAAGAGCTAGAAGCCAAGGACG
AGCTCATCGAGGCTCTACGGGAACAGTTGAAGGACATCCAAACACAGCAA
CGGCGGGGGCAAGGACCTCGTCCTGTTTCCTCGATGCAGTCACCGGGAGG
CTTTGATCTACCCGCCGACAGCGACGACAGTGACGATAGTGAC
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