mRNA_P-littoralis_Contig63.39.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A6H5J6R4_9PHAE (NAC-A/B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6R4_9PHAE) HSP 1 Score: 137 bits (346), Expect = 2.960e-35 Identity = 77/125 (61.60%), Postives = 97/125 (77.60%), Query Frame = 1
Query: 1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAP-PPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
VFRMTIRT+NG VFVVK PDVF+HP+Q++YVVFG A+T+ SGS+VRA PP+ P ++ K A AVV +RPDP+AVES+S++AGLDPADVLT+VS GC +AAI ALR+ADGDV+
Sbjct: 708 VFRMTIRTTNGVVFVVKGPDVFRHPRQESYVVFGSAETDGSGSEVRASRPPQSFVPPAIAVGAPPKVAG---AVVPASRPDPLAVESDSISAGLDPADVLTLVSQVGCDSKAAIVALRQADGDVI 829
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: D7FI48_ECTSI (Nascent polypeptide associated complex alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI48_ECTSI) HSP 1 Score: 136 bits (343), Expect = 6.950e-35 Identity = 77/125 (61.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query: 1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAP-PPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
VFRMT+RT+NG VFVVK PDVF+HP+Q+TYVVFG A+T+ SGS+VRA PPR P AAVV +RPDP+AVES+S++AGLDPADVLT+VS GC +AAI ALR+ADGDV+
Sbjct: 625 VFRMTMRTTNGVVFVVKAPDVFRHPRQETYVVFGSAETDGSGSEVRASRPPRSFVPPPKKA----------AAVVPASRPDPLAVESDSISAGLDPADVLTLVSQVGCDSQAAIVALRQADGDVI 739
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A067MLH5_9AGAM (Nascent polypeptide-associated complex subunit alpha n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MLH5_9AGAM) HSP 1 Score: 65.5 bits (158), Expect = 1.240e-10 Identity = 41/122 (33.61%), Postives = 60/122 (49.18%), Query Frame = 1
Query: 7 RMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
R+T+R + +FVV TPDV+K P D Y+VFG T S S+ +A P TA + PV E E G+DP D+ I++ GCS A+ L+E++GD++
Sbjct: 65 RVTLRRAKNVLFVVATPDVYKSPNSDCYIVFGEVKTEDSNSQAQAHIPAA------QASHAEHTADXXXXXXIPALEAPVEEEGEIDETGVDPKDIDLIMAQVGCSRAKAVKVLKESEGDLI 180
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A2V0PBM2_9CHLO (NAC-A/B domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PBM2_9CHLO) HSP 1 Score: 59.3 bits (142), Expect = 3.090e-8 Identity = 43/131 (32.82%), Postives = 69/131 (52.67%), Query Frame = 1
Query: 1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPA---DTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVE----SESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
V R+TIR S +FV+++PDVFK P DTYV+FG A D + + + A R+ A G+T+ AA + + P ++ E AG++P D+ +++ A S A+ AL+ + GD+V
Sbjct: 66 VSRVTIRKSKNILFVIQSPDVFKSPASDTYVIFGEAKIEDLSAAAQQQMAQQFRMAAEADA-----GETSGAAAATSLDSSSSPCVLQLDDGEEVDEAGVEPKDIELVMTQASVSRARAVKALKASGGDIV 191
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A843V117_COLES (NAC-A/B domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843V117_COLES) HSP 1 Score: 57.8 bits (138), Expect = 6.190e-8 Identity = 43/126 (34.13%), Postives = 64/126 (50.79%), Query Frame = 1
Query: 1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPP-RVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESV-AAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
V R+TI+ S +FV+ TPDVFK P DTYV+FG A S+++ R P + + + ST A + E V G++P DV +++ AG S A+ AL+ A+GD+V
Sbjct: 37 VSRVTIKKSKNILFVISTPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAERFRAPDLSHVISRPERLST-------------AQDDEEVDETGVEPKDVELVMTQAGVSRPKAVKALKAAEGDIV 149
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A165LBY9_EXIGL (Nascent polypeptide-associated complex subunit alpha n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165LBY9_EXIGL) HSP 1 Score: 57.8 bits (138), Expect = 1.030e-7 Identity = 36/122 (29.51%), Postives = 57/122 (46.72%), Query Frame = 1
Query: 7 RMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
R+T+R +FV+ +P+VFK P D Y+VFG A + + + + + S NGK A E E G+DP D+ +V+ GCS A+ L+E+ GD++
Sbjct: 61 RVTLRRPKNMLFVIASPEVFKSPNSDCYIVFGEAKVEDMNQQAQMSAAQQLGASAVSGVNNGKAVKNDDXXXXXIPELEPAEEGEVDETGVDPKDIELVVAQVGCSRAKAVRVLKESGGDLI 182
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A0L1KYG7_9EUGL (NAC-A/B domain-containing protein n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KYG7_9EUGL) HSP 1 Score: 56.6 bits (135), Expect = 2.040e-7 Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = 1
Query: 7 RMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
R+TIR + FV+ TP+ +K+P D YV+FG + ++ + + ++P + +T ST + + E A GL+ D+ ++S A S AAI ALRE DGD+V
Sbjct: 56 RVTIRKAKNVTFVIATPEAYKYPGTDAYVIFGEPSFGEESNEYQKAAQQF------TLPRDAETRSTVEEI-----------DEEQNADGLEEKDIELVMSQAMVSRNAAIKALRENDGDIV 160
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: UPI001F9CE04E (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F9CE04E) HSP 1 Score: 55.1 bits (131), Expect = 4.770e-7 Identity = 42/125 (33.60%), Postives = 62/125 (49.60%), Query Frame = 1
Query: 7 RMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPA---DTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
R+TIR S +FV+ +PDV+K+P DTY+VFG A D +Q + A R P + + + A T A + + D V+ G+D DV ++S A S A+ ALR D+V
Sbjct: 14 RVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSQQATMAAAE--RFKAPESAAAGTDAAAAGTTVAPIAEEE-DEEGVDDT----GVDEKDVEIVMSQANVSRARAVRALRNNQSDIV 131
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A212EPN1_DANPL (Nascent polypeptide associated complex protein alpha subunit n=5 Tax=Papilionoidea TaxID=37572 RepID=A0A212EPN1_DANPL) HSP 1 Score: 55.5 bits (132), Expect = 9.620e-7 Identity = 45/130 (34.62%), Postives = 65/130 (50.00%), Query Frame = 1
Query: 1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPA---DTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAG---LDPADVLTIVSHAGCSPRAAISALREADGDVV 372
V R+TIR S +FV+ +PDV+K+P DTY+VFG A D +Q + A R P T + + T+ T A P+A E +S A +D DV +++ A S A+ ALR D+V
Sbjct: 84 VSRVTIRKSKNILFVISSPDVYKNPHSDTYIVFGEAKIEDLSQQATMAAAE--RFKAPETAAAGNDTATSGTTVA--------PIAEEEDSEGADEGDVDEKDVEIVMTQANVSRARAVRALRNNQSDIV 203
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: D8UIE7_VOLCA (NAC-A/B domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=D8UIE7_VOLCA) HSP 1 Score: 55.1 bits (131), Expect = 1.040e-6 Identity = 40/137 (29.20%), Postives = 64/137 (46.72%), Query Frame = 1
Query: 1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAG-------------LDPADVLTIVSHAGCSPRAAISALREADGDVV 372
V R+TI+ S +FV+++PDVFK P DTY++FG A ++ +A AA + RP+P A ++ AAG ++ D+ +++ A S AI AL+ A+GD+V
Sbjct: 67 VTRVTIKKSKNILFVIQSPDVFKSPASDTYIIFGEAKIEDLSAQSQA----------------------AAAEQFKMRPEPEAAQALGAAAGQAEDDDEEVDDSGVEQKDIELVMTQANVSRAKAIKALKNAEGDIV 181 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig63.39.1 >prot_P-littoralis_Contig63.39.1 ID=prot_P-littoralis_Contig63.39.1|Name=mRNA_P-littoralis_Contig63.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp MTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPPRVVback to top mRNA from alignment at P-littoralis_Contig63:208332..209477- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig63.39.1 ID=mRNA_P-littoralis_Contig63.39.1|Name=mRNA_P-littoralis_Contig63.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1146bp|location=Sequence derived from alignment at P-littoralis_Contig63:208332..209477- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig63:208332..209477- >mRNA_P-littoralis_Contig63.39.1 ID=mRNA_P-littoralis_Contig63.39.1|Name=mRNA_P-littoralis_Contig63.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig63:208332..209477- (Pylaiella littoralis U1_48)back to top |