mRNA_P-littoralis_Contig63.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.39.1
Unique NamemRNA_P-littoralis_Contig63.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A6H5J6R4_9PHAE (NAC-A/B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6R4_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.960e-35
Identity = 77/125 (61.60%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAP-PPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
            VFRMTIRT+NG VFVVK PDVF+HP+Q++YVVFG A+T+ SGS+VRA  PP+   P   ++    K A    AVV  +RPDP+AVES+S++AGLDPADVLT+VS  GC  +AAI ALR+ADGDV+
Sbjct:  708 VFRMTIRTTNGVVFVVKGPDVFRHPRQESYVVFGSAETDGSGSEVRASRPPQSFVPPAIAVGAPPKVAG---AVVPASRPDPLAVESDSISAGLDPADVLTLVSQVGCDSKAAIVALRQADGDVI 829          
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: D7FI48_ECTSI (Nascent polypeptide associated complex alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI48_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 6.950e-35
Identity = 77/125 (61.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:    1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAP-PPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
            VFRMT+RT+NG VFVVK PDVF+HP+Q+TYVVFG A+T+ SGS+VRA  PPR   P               AAVV  +RPDP+AVES+S++AGLDPADVLT+VS  GC  +AAI ALR+ADGDV+
Sbjct:  625 VFRMTMRTTNGVVFVVKAPDVFRHPRQETYVVFGSAETDGSGSEVRASRPPRSFVPPPKKA----------AAVVPASRPDPLAVESDSISAGLDPADVLTLVSQVGCDSQAAIVALRQADGDVI 739          
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A067MLH5_9AGAM (Nascent polypeptide-associated complex subunit alpha n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MLH5_9AGAM)

HSP 1 Score: 65.5 bits (158), Expect = 1.240e-10
Identity = 41/122 (33.61%), Postives = 60/122 (49.18%), Query Frame = 1
Query:    7 RMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
            R+T+R +   +FVV TPDV+K P  D Y+VFG   T  S S+ +A  P               TA       +     PV  E E    G+DP D+  I++  GCS   A+  L+E++GD++
Sbjct:   65 RVTLRRAKNVLFVVATPDVYKSPNSDCYIVFGEVKTEDSNSQAQAHIPAA------QASHAEHTADXXXXXXIPALEAPVEEEGEIDETGVDPKDIDLIMAQVGCSRAKAVKVLKESEGDLI 180          
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A2V0PBM2_9CHLO (NAC-A/B domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PBM2_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 3.090e-8
Identity = 43/131 (32.82%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPA---DTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVE----SESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
            V R+TIR S   +FV+++PDVFK P  DTYV+FG A   D + +  +  A   R+   A       G+T+   AA  + +   P  ++     E   AG++P D+  +++ A  S   A+ AL+ + GD+V
Sbjct:   66 VSRVTIRKSKNILFVIQSPDVFKSPASDTYVIFGEAKIEDLSAAAQQQMAQQFRMAAEADA-----GETSGAAAATSLDSSSSPCVLQLDDGEEVDEAGVEPKDIELVMTQASVSRARAVKALKASGGDIV 191          
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A843V117_COLES (NAC-A/B domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843V117_COLES)

HSP 1 Score: 57.8 bits (138), Expect = 6.190e-8
Identity = 43/126 (34.13%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPP-RVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESV-AAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
            V R+TI+ S   +FV+ TPDVFK P  DTYV+FG A      S+++     R   P  + +    +  ST             A + E V   G++P DV  +++ AG S   A+ AL+ A+GD+V
Sbjct:   37 VSRVTIKKSKNILFVISTPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAERFRAPDLSHVISRPERLST-------------AQDDEEVDETGVEPKDVELVMTQAGVSRPKAVKALKAAEGDIV 149          
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A165LBY9_EXIGL (Nascent polypeptide-associated complex subunit alpha n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165LBY9_EXIGL)

HSP 1 Score: 57.8 bits (138), Expect = 1.030e-7
Identity = 36/122 (29.51%), Postives = 57/122 (46.72%), Query Frame = 1
Query:    7 RMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
            R+T+R     +FV+ +P+VFK P  D Y+VFG A       + +    + +  +  S   NGK                 A E E    G+DP D+  +V+  GCS   A+  L+E+ GD++
Sbjct:   61 RVTLRRPKNMLFVIASPEVFKSPNSDCYIVFGEAKVEDMNQQAQMSAAQQLGASAVSGVNNGKAVKNDDXXXXXIPELEPAEEGEVDETGVDPKDIELVVAQVGCSRAKAVRVLKESGGDLI 182          
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A0L1KYG7_9EUGL (NAC-A/B domain-containing protein n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KYG7_9EUGL)

HSP 1 Score: 56.6 bits (135), Expect = 2.040e-7
Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = 1
Query:    7 RMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
            R+TIR +    FV+ TP+ +K+P  D YV+FG     +  ++ +    +       ++P + +T ST   +           + E  A GL+  D+  ++S A  S  AAI ALRE DGD+V
Sbjct:   56 RVTIRKAKNVTFVIATPEAYKYPGTDAYVIFGEPSFGEESNEYQKAAQQF------TLPRDAETRSTVEEI-----------DEEQNADGLEEKDIELVMSQAMVSRNAAIKALRENDGDIV 160          
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: UPI001F9CE04E (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F9CE04E)

HSP 1 Score: 55.1 bits (131), Expect = 4.770e-7
Identity = 42/125 (33.60%), Postives = 62/125 (49.60%), Query Frame = 1
Query:    7 RMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPA---DTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVSHAGCSPRAAISALREADGDVV 372
            R+TIR S   +FV+ +PDV+K+P  DTY+VFG A   D +Q  +   A   R   P + +   +   A T  A + +   D   V+      G+D  DV  ++S A  S   A+ ALR    D+V
Sbjct:   14 RVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSQQATMAAAE--RFKAPESAAAGTDAAAAGTTVAPIAEEE-DEEGVDDT----GVDEKDVEIVMSQANVSRARAVRALRNNQSDIV 131          
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: A0A212EPN1_DANPL (Nascent polypeptide associated complex protein alpha subunit n=5 Tax=Papilionoidea TaxID=37572 RepID=A0A212EPN1_DANPL)

HSP 1 Score: 55.5 bits (132), Expect = 9.620e-7
Identity = 45/130 (34.62%), Postives = 65/130 (50.00%), Query Frame = 1
Query:    1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPA---DTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAG---LDPADVLTIVSHAGCSPRAAISALREADGDVV 372
            V R+TIR S   +FV+ +PDV+K+P  DTY+VFG A   D +Q  +   A   R   P T +   +  T+ T  A        P+A E +S  A    +D  DV  +++ A  S   A+ ALR    D+V
Sbjct:   84 VSRVTIRKSKNILFVISSPDVYKNPHSDTYIVFGEAKIEDLSQQATMAAAE--RFKAPETAAAGNDTATSGTTVA--------PIAEEEDSEGADEGDVDEKDVEIVMTQANVSRARAVRALRNNQSDIV 203          
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Match: D8UIE7_VOLCA (NAC-A/B domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=D8UIE7_VOLCA)

HSP 1 Score: 55.1 bits (131), Expect = 1.040e-6
Identity = 40/137 (29.20%), Postives = 64/137 (46.72%), Query Frame = 1
Query:    1 VFRMTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPPRVVTPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAG-------------LDPADVLTIVSHAGCSPRAAISALREADGDVV 372
            V R+TI+ S   +FV+++PDVFK P  DTY++FG A      ++ +A                       AA   + RP+P A ++   AAG             ++  D+  +++ A  S   AI AL+ A+GD+V
Sbjct:   67 VTRVTIKKSKNILFVIQSPDVFKSPASDTYIIFGEAKIEDLSAQSQA----------------------AAAEQFKMRPEPEAAQALGAAAGQAEDDDEEVDDSGVEQKDIELVMTQANVSRAKAIKALKNAEGDIV 181          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6R4_9PHAE2.960e-3561.60NAC-A/B domain-containing protein n=1 Tax=Ectocarp... [more]
D7FI48_ECTSI6.950e-3561.60Nascent polypeptide associated complex alpha n=1 T... [more]
A0A067MLH5_9AGAM1.240e-1033.61Nascent polypeptide-associated complex subunit alp... [more]
A0A2V0PBM2_9CHLO3.090e-832.82NAC-A/B domain-containing protein n=1 Tax=Raphidoc... [more]
A0A843V117_COLES6.190e-834.13NAC-A/B domain-containing protein n=1 Tax=Colocasi... [more]
A0A165LBY9_EXIGL1.030e-729.51Nascent polypeptide-associated complex subunit alp... [more]
A0A0L1KYG7_9EUGL2.040e-731.15NAC-A/B domain-containing protein n=1 Tax=Perkinse... [more]
UPI001F9CE04E4.770e-733.60Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A212EPN1_DANPL9.620e-734.62Nascent polypeptide associated complex protein alp... [more]
D8UIE7_VOLCA1.040e-629.20NAC-A/B domain-containing protein n=3 Tax=Volvox T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:208332..209477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FI48
Preferred nameNACAD
PFAMsNAC
Model size372
Max annot lvl2759|Eukaryota
KEGG rclassRC00672
KEGG koko:K03626,ko:K10659,ko:K15730
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,map00590,map01100
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.11e-34
EggNOG OGsCOG1308@1|root,KOG2239@2759|Eukaryota
EC2.3.2.27,5.3.99.3
Descriptionprotein transport
Cds size363
COG categoryK
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791312.0312839-CDS-P-littoralis_Contig63:208331..2085141680791312.0312839-CDS-P-littoralis_Contig63:208331..208514Pylaiella littoralis U1_48CDSP-littoralis_Contig63 208332..208514 -
1680791312.0524452-CDS-P-littoralis_Contig63:208981..2090891680791312.0524452-CDS-P-littoralis_Contig63:208981..209089Pylaiella littoralis U1_48CDSP-littoralis_Contig63 208982..209089 -
1680791312.0698478-CDS-P-littoralis_Contig63:209396..2094681680791312.0698478-CDS-P-littoralis_Contig63:209396..209468Pylaiella littoralis U1_48CDSP-littoralis_Contig63 209397..209468 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791312.0797365-UTR-P-littoralis_Contig63:209468..2094771680791312.0797365-UTR-P-littoralis_Contig63:209468..209477Pylaiella littoralis U1_48UTRP-littoralis_Contig63 209469..209477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.39.1prot_P-littoralis_Contig63.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 208332..209468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.39.1

>prot_P-littoralis_Contig63.39.1 ID=prot_P-littoralis_Contig63.39.1|Name=mRNA_P-littoralis_Contig63.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MTIRTSNGSVFVVKTPDVFKHPQQDTYVVFGPADTNQSGSKVRAPPPRVV
TPATTSIPLNGKTASTKAAVVVQTRPDPVAVESESVAAGLDPADVLTIVS
HAGCSPRAAISALREADGDVV
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mRNA from alignment at P-littoralis_Contig63:208332..209477-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.39.1 ID=mRNA_P-littoralis_Contig63.39.1|Name=mRNA_P-littoralis_Contig63.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1146bp|location=Sequence derived from alignment at P-littoralis_Contig63:208332..209477- (Pylaiella littoralis U1_48)
GTGTTCCGCATGACAATAAGGACGAGCAACGGCTCCGTTTTTGTCGTCAA GACCCCTGACGTGTTCAAGCACCCGCAGCAGGTGGGAACTGTGCTCTATT CTTCTCCTTCTTTTCTTTGGCAACACTGCTGTCGTGCATTAAAAAAAGAA GGATGGAGTTCTGTGTACCGATTTGTAATTTTTTTCAAGACGACCAACCC CCCTGCGGTTAGTGATGGCTGCGGAACAAATAACCTATTGCTACGTAAGG TACCTAGATTTCAACCCCTCCCCCACCCCCCGCCCTCCTGGTTGCTTTTT CTTTCATCCCCCCTTCCGGTATGTCCACCATCTCAGCTTCCCCCCCCCCC GCCCCGATGGGTTCACCCTCCCGTTATCGTCTCTTCAGGACACCTACGTG GTATTCGGGCCAGCGGACACGAATCAGTCGGGCAGCAAGGTTCGCGCACC GCCCCCGAGGGTAGTCACGCCAGCAACCACCAGCATTCCCTTAAACGTGA GTTGAGTCTTTCTGGTCGATTCCGTGATATCATACAATTTTGTTTTATTA TCATCGTCGAGACAGTAGTGCCCTTGGCGTCACACCCTTCGCTTCGAACG GATGGCGAAGGCAATCGTCGAAGCCAGCGCACTACATCATGGCTCTCCCA CGGGTACGACGACTTTAGTGTCTGCAGCGTGATCTTTCACCTAGTCGATA CCCGTCTGATACAAGCACAGCCTGTAGTCCCCCCGGCTTCGTGGCGTTCT TTTCTCACCACCGAATCCACCAACCTAGACCTGTTCACCCGCCAGTCGAA GAAACAAAGGCGTCGATGATACTCACATGCCCTAACAATCACCCCCCCCC CGCGCGCCCCCTCTGACCTCCTCCCCATCACCCCTCCATCATTTTTCGCT GGCACTTTTCACCACTACCAACCACATTGCGGGTATGTACCGGTAACGTC CTGGTGGTTACAGGGGAAAACGGCGTCGACAAAGGCCGCCGTCGTCGTGC AAACTCGGCCCGATCCCGTGGCTGTGGAGAGCGAGTCCGTCGCGGCGGGC TTAGACCCCGCGGACGTCCTCACCATCGTCTCGCACGCGGGCTGCAGCCC CCGGGCGGCGATCAGCGCCCTCCGTGAGGCAGACGGGGACGTGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:208332..209477-

>mRNA_P-littoralis_Contig63.39.1 ID=mRNA_P-littoralis_Contig63.39.1|Name=mRNA_P-littoralis_Contig63.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig63:208332..209477- (Pylaiella littoralis U1_48)
ATGACAATAAGGACGAGCAACGGCTCCGTTTTTGTCGTCAAGACCCCTGA
CGTGTTCAAGCACCCGCAGCAGGACACCTACGTGGTATTCGGGCCAGCGG
ACACGAATCAGTCGGGCAGCAAGGTTCGCGCACCGCCCCCGAGGGTAGTC
ACGCCAGCAACCACCAGCATTCCCTTAAACGGGAAAACGGCGTCGACAAA
GGCCGCCGTCGTCGTGCAAACTCGGCCCGATCCCGTGGCTGTGGAGAGCG
AGTCCGTCGCGGCGGGCTTAGACCCCGCGGACGTCCTCACCATCGTCTCG
CACGCGGGCTGCAGCCCCCGGGCGGCGATCAGCGCCCTCCGTGAGGCAGA
CGGGGACGTGGTG
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