mRNA_P-littoralis_Contig63.25.8 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig63.25.8 vs. uniprot
Match: D8LLU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU4_ECTSI) HSP 1 Score: 420 bits (1080), Expect = 5.150e-128 Identity = 355/623 (56.98%), Postives = 385/623 (61.80%), Query Frame = 1
Query: 112 MLLEAVHRVNVPRAAALLLRGADVNTTDAQGVTPLIIACERGEMRMVDLLLEARASTKMVTNDTQSSCLHIAAKNNAAEIVARLLKVDPTIEERATSQGDTPLMVACLSAVQTEASAATLAVLLRPKLGGSSSRSSSGSS-----NIRSSSTDSRGSTVPFLGPDDSRLVARNRHGHTALHCAAFAQSPTAVRMLLRAGADCTIADKAGRTAVEVALNLNQTKATALREGARGGSAPAAECLKLLTERWAELESEAKERQLVLLGELEGG-GGSRGKSXXXXXXXGALGXXXXXXXXXXXXXXXXXXXXXQGVGLEGGADAARVGGGVHGAAVEAVGEITSTAGXXXXXXXXXXXXXXXXXXATLVSASRRQVQVATAHT--LGEPEEKLDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEGETDDEAGSHPSSEAETGSHEGDSADRAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVDGE-ETAVDEAWSVVARPTRKKKVALPPPR----SSRTPSPPLSAAMAGGSAGRTRAYGPPPRNGFVASRNRSVDYPALPVRERGPRG 1941
MLLEAVHRVNV RAA LL RGADVNTTDAQGVTPLIIACERGE++M+DLLL+ARASTKMVTNDTQSSCLHIAAKNNA +IV RLL+VDPTIEERATSQGDT LMVACLSAV+TEAS+ATL LL+P+L ++ S+ S R +S + V LGPDD RLVARNRHGHTALHCAAF+QSPTAVR+LL AGADCTI D+AG TAVEVALNL + KATA WA+LE+EAKERQ LLGELEGG GG RG + XXXXXXXXXXXXXXXXXXX AD V GGV AA AV EITSTA A+ + SRR + AT T LG E + DGG DSEG+TDDEAGSHPSSEAETGSHEGD ADR + XXXXXXXXXXXXXXXXXXXXXXXXXXXXX + DG E VDEAWSVVARP RKKK LPPPR SSR SPPLSA + G AGR RA G GFVASRNRS DYPALP RE RG
Sbjct: 3 MLLEAVHRVNVQRAATLLARGADVNTTDAQGVTPLIIACERGELKMLDLLLKARASTKMVTNDTQSSCLHIAAKNNAEDIVLRLLEVDPTIEERATSQGDTALMVACLSAVETEASSATLNALLQPRLATTTGPSNKASGPPPRKTGRYASAGDGKAPVAVLGPDDPRLVARNRHGHTALHCAAFSQSPTAVRLLLEAGADCTIRDEAGLTAVEVALNLIK-KATA----------------------WAKLENEAKERQRALLGELEGGEGGERGGNGRSSGATXXXXXXXXXXXXXXXXXXXXXXXLEDTTTPACDADGMHVEGGVRDAATAAVEEITSTA------------ITAAVTTASQTAPSRRPIAAATTTTDGLGNAERRRDGGDAGYEQDGTGS-------------------DSEGKTDDEAGSHPSSEAETGSHEGDPADRTSGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQEGALAAGATS---------------------------------KADGSREHEVDEAWSVVARPARKKKTTLPPPRAQRPSSRPSSPPLSAVVRGVPAGRVRALGNKGPQGFVASRNRSTDYPALPAREAVSRG 538
BLAST of mRNA_P-littoralis_Contig63.25.8 vs. uniprot
Match: A0A6H5K161_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K161_9PHAE) HSP 1 Score: 374 bits (961), Expect = 2.540e-110 Identity = 401/840 (47.74%), Postives = 442/840 (52.62%), Query Frame = 1
Query: 112 MLLEAVHRVNVPRAAALLLRGADVNTTDAQGVTPLIIACERG---------------------------EMRMVDLLLEARASTKMVTNDTQSSCLHIAAKNNAAEIVARLLKVDPTIEERATSQGDTPLMVACLSAVQTEASAATLAVLLRPKLGGSSSRSSSGSSNIRSSS----TDSRGST------VPFLGPDDSRLVARNRHGHTALHCAAFAQSPTAVRMLLRAGADCTIADKAGRTAVEVALNLNQTKATALREGARGGSAPAAECLKLLTERWAELESEAKERQLVLLGELEGGGGSRGKSXXXXXXXGALGXXXXXXXXXXXXXXXXXXXXXQGVGLEGGADAARVGGGVHGAAVEAVGEITSTAGXXXXXXXXXXXXXXXXXXATLVSASRRQVQVATAHT--LGEPEEKLDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEGETDDEAGSHPSSEAETGSHEGDSADRAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVDGEETAVDEAWSVVARPTRKKKVALP--PPR--SSRTPSPPLSAAMAGGSAGRTRAYGPPPRNGFVASRNRSVDYPALPVRERGPRGPKAGAVAGPSGGQAPALKMEPSSGSRVALSGGPTVAAVEXXXXXXXXXXXXXXXXXXXPPQTLTVPHGAPVDVVIPAPAAAVVA-PCSASLLDMSTPSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------EEHLGLITQAESG---RXXXXXXXXXXEKQEALVRRQLNVNANAWQPALPAP 2472
MLLEAVH+VNV RAAALL RGADVNTTDAQGVTPLIIACERG E++M+DLLL+ARASTKMVTNDTQSSCLHIAAKNNAAEIV RLL+VDPTIEE+ATSQGDT LMVACLSAV+TEAS+ATL LLRP+ S++G SN +S+ T S S V LGPDD RLVARNRHGHTALHCAAF+QSPTAVR+LL AGADCTI DKAGRTAVEVALNLN+ KAT LREGARGGSAPAAECL+LL ER E+ + +E+Q L G + G V GGV AA AV EITSTA XXXXXXX RR + AT T LG E + DGG DSEG+TDDEAGSHPSSEAETGSHEGD ADR + XXXXXXXXXXXXXXXXXXXXXXXXXX G VDEAWSVVARP RKKK ALP P R S R SPPLSA + G AGR RA G G +V +P AV G GG SG A E + P A + PA AAA VA P A++ D+ XXXXXXXXXXXXXXXXXXXXXXXX +E + A++G XXXXX EKQ LVRRQLNVNANAWQP +P+P
Sbjct: 3 MLLEAVHQVNVQRAAALLARGADVNTTDAQGVTPLIIACERGALCLGTSSNHAVTVTAXXXXXXPAATGELKMLDLLLKARASTKMVTNDTQSSCLHIAAKNNAAEIVLRLLEVDPTIEEKATSQGDTALMVACLSAVETEASSATLNALLRPRP-----TSTTGPSNNATSAPPRKTGSYASAGDGKAPVAVLGPDDPRLVARNRHGHTALHCAAFSQSPTAVRLLLEAGADCTIGDKAGRTAVEVALNLNKKKATGLREGARGGSAPAAECLRLLKER--EVLAGLQEQQERLEGTTTSAYDANGM---------------------------------------------HVEGGVRDAATAAVEEITSTA----------VTXXXXXXXXXXXXXXRRPIASATTTTDGLGNSEGRGDGGDAGHEQYGTGS-------------------DSEGKTDDEAGSHPSSEAETGSHEGDFADRTSRAAXXXXXXXXXXXXXXXXXXXXXXXXXXQEGALAAGATSDADG-------------------------------------GRAHEVDEAWSVVARPARKKKTALPTLPARRPSPRPSSPPLSAVVLVGPAGRVRALG---NKGXXXXXXXAVTTAFVPA-----------AVGGGQGG-----------------SGREGAGAREQGS------------------SRASTPANATYETAAPAAAAAAVASPPPATVSDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAVAHVAADGQEEAVPVLPAQTGGHHEDSXXXXXNSNEKQGPLVRRQLNVNANAWQPPIPSP 675
BLAST of mRNA_P-littoralis_Contig63.25.8 vs. uniprot
Match: A0A484DU98_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DU98_BRELC) HSP 1 Score: 68.2 bits (165), Expect = 6.680e-8 Identity = 73/256 (28.52%), Postives = 112/256 (43.75%), Query Frame = 1
Query: 181 VNTTDAQGVTPLIIACERGEMRMVDLLLEARASTKMVTNDTQSSCLHIAAKNNAAEIVARLLKVDPTIEERATSQGDTPLMVACLSA----------------VQTEASAATL--AVLLRPKLGGSSSRSSSGSSNIRSSSTDS-RGSTVPFLGPDDSRLVA-RNRHGHTALHCAAFAQSPTAVRMLLRAGADCTIADKAGRTAVEVALNLNQTKATALREGARGGSAPAAECLKLLTERWAELESEAKERQLVLL 888
VN D G T L++A G +V LL+ A ++ T++ +S+ LH AAKN A IVA L + D ++ + S GDTPL+ AC+ V + A+TL AV++ G D R + L LV ++ G TA+H A ++ LL GAD T+ + G+TA+E AL++ + + RE C+ + W +LE EA R + +L
Sbjct: 82 VNDVDVDGFTALMVAAAEGHRDVVRTLLKRGADVRIQTHELRSTALHFAAKNGDAVIVAALCECDASMIDCWNSNGDTPLIWACIEGRVEAVKVFLKYGADVTVLNQYGASTLLCAVMV-------------GEDPEEVEEIDEQRAEILTMLLATKKVLVNFQDPEGSTAMHLAMSCGYLACIKTLLANGADITLRNVIGQTALEEALDVWKEE----REP----------CIAYVRGIWQQLEEEAAARMMAML 310
BLAST of mRNA_P-littoralis_Contig63.25.8 vs. uniprot
Match: UPI000712025E (ankyrin repeat domain-containing protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000712025E) HSP 1 Score: 65.1 bits (157), Expect = 5.510e-7 Identity = 66/253 (26.09%), Postives = 110/253 (43.48%), Query Frame = 1
Query: 175 ADVNTTDAQGVTPLIIACERGEMRMVDLLLEARASTKMVTNDTQSSCLHIAAKNNAAEIVARLLKVDPTIEERATSQGDTPLMVACLSAVQTEASAATLAVLLRPKLGGSSSRSSSGSSNIRSSSTDSRGSTV-PFLGPDDSR--------------LVARNRHGHTALHCAAFAQSPTAVRMLLRAGADCTIADKAGRTAVEVALNLNQTKATALREGARGGSAPAAECLKLLTERWAELESEAKERQLVLL 888
A+VN TD+ G + L+IA G ++V+ L++ S VT + ++ L AAK +I +L+ + + + G+TPL+ +C S LL K + IR+ S + + LGP+DSR + ++ G TALH A+ + + V++LL AGAD T+ D G T +++A +C +L ++W ELE +A+ LL
Sbjct: 46 ANVNQTDSDGFSALMIAASEGHEKIVEELIKRDCSVSTVTLNKNNTPLFFAAKGGNVKIGKIILEKNRKLINQCNVLGETPLLWSCYSGNYD-----FFMYLLSQK------------AEIRAMSVNDTTCLIGACLGPEDSRARLAEEIIKLCPKIIDVQDVDGQTALHVASSNGNLSCVKLLLNAGADSTLRDVGGLTPLQLAEKYCYP-----------------DCAIVLEQKWKELEEKARVEMEALL 264
BLAST of mRNA_P-littoralis_Contig63.25.8 vs. uniprot
Match: A0A813EJJ0_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EJJ0_POLGL) HSP 1 Score: 58.2 bits (139), Expect = 3.060e-5 Identity = 58/185 (31.35%), Postives = 80/185 (43.24%), Query Frame = 1
Query: 172 GAD-VNTTDAQGVTPLIIACERGEMRMVDLLLEARASTKMVTNDTQSSCLHIAAKNNAAEIVARLLKVDPTIEERATSQGDTPLMVACLSAVQTEASAATLAVLLRPKLGGSSSRSSSGSSNIRSSSTDSRGSTVPFLGPDDSRLVARNRHGHTALHCAAFAQSPTAVRMLLRAGADCTIADKAG 723
GAD + DA+G +PL+IAC G + V +LLEARA ++ V + CL +AA++ + E++A LL G T L+ A E SA +A LL G ++ S L R+ G AL CAA A +P V+ LLR GA D G
Sbjct: 34 GADGLRAVDAEGRSPLLIACSSGGLSAVQMLLEARADSESVDLGGRGLCL-LAAESGSRELLAWLLGQGLVNLTECAEDGSTALLCAA-GGQHAEQSAQMVAFLLDGPPGAQTA----------------------------SSLEERDERGADALLCAAEAGAPAVVKELLRRGASVATVDAHG 188
BLAST of mRNA_P-littoralis_Contig63.25.8 vs. uniprot
Match: A0A7R8WMP3_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WMP3_9CRUS) HSP 1 Score: 59.3 bits (142), Expect = 3.310e-5 Identity = 64/205 (31.22%), Postives = 97/205 (47.32%), Query Frame = 1
Query: 169 RGADVNTTDAQGVTPLIIACERGEMRMVDLLLEARASTKMVTNDTQSSCLHIAAKNNAAEIVARLLKVDPTIEERATSQGDTPLMVACLSAVQTEASAATLAVLLRPKLGGSSSRSSSGSSNIRSSSTDSRGSTVPFL-------GPDDSRLVA-RNRHGHTALHCAAFAQSPTAVRMLLRAGADCTIADKAGRTAVEVALNLNQ 759
RG +N D G TPL A +G + V LLLEA A + N+ + + +A N +EI L++ E G TPL +A ++ +L LL + ++ G I +++ V FL P+D +V RN G+T L A Q VR+LL+AGAD TIA+KAG+T +++A N ++
Sbjct: 156 RGDMLNERDNDGDTPLSCAVRKGRVECVRLLLEAGADLT-IGNEEGKTPIDLA--ENGSEISLCLIR------EAKVKYGKTPLKLAAITR-----DIDSLKQLLEEDMTRFWKKTEDGQLPIHTAAQFGGRKVVGFLLCRYEKLHPEDGDMVNYRNGDGNTPLSLAVQKQDIETVRLLLQAGADVTIANKAGKTPIDLAENESE 346
BLAST of mRNA_P-littoralis_Contig63.25.8 vs. uniprot
Match: A0A4D8XZ80_9ALVE (Serine-type endopeptidase n=1 Tax=Perkinsus sp. BL_2016 TaxID=2494336 RepID=A0A4D8XZ80_9ALVE) HSP 1 Score: 58.9 bits (141), Expect = 3.680e-5 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query: 124 AVHRVNVPRAAALLLRGADVN--TTDAQGVTPLIIACERGEMRMVDLLLEARASTKMVTNDTQSSC-LHIAAKNNAAEIVARLLKVDPTIEERATSQGDTPLMVA 429
AV N A L+ RGAD + +TD QGV+P ++ACE G+ V ++L+A + + D Q + LH+AA+N A IV L+ V P +E G T +A
Sbjct: 390 AVSSDNDKVVAELIRRGADPDHRSTDDQGVSPFLLACELGQESAVRMMLKATQGRCVDSTDAQGNTGLHLAAENGHAGIVQVLMSVMPQLEREENQDGKTAAQLA 494
BLAST of mRNA_P-littoralis_Contig63.25.8 vs. uniprot
Match: A0A2T7T2N0_9BURK (Uncharacterized protein n=1 Tax=Limnohabitans sp. Rim28 TaxID=1100720 RepID=A0A2T7T2N0_9BURK) HSP 1 Score: 56.6 bits (135), Expect = 4.980e-5 Identity = 57/221 (25.79%), Postives = 89/221 (40.27%), Query Frame = 1
Query: 121 EAVHRVNVPRAAALLLRGADVNTTDAQGVTPLIIACERGEMRMVDLLLEARASTKMVTNDTQSSCLHIAAKNNAAEIVARLLKVDPTIEERATSQGDTPLMVACLSAVQTEASAATLAVLLRPKLGGSSSRSSSGSSNIRSSSTDSRGSTVPFLGPDDSRLVARNRHGHTALHCAAFAQSPTAVRMLLRAGADCTIADKAGRTAVEVALNLNQTKATALRE 783
+AV NV LL RG D NT + +GV L++A +++ +LL + V N S L +AA +V +L+ D + + G TPL A T + FL + + + A + +G T L AA SP AV+ L++AGAD T+ ++ G TA++ A+ + A L E
Sbjct: 33 KAVQVDNVRTVQTLLQRGFDPNTVNPEGVPALMVAVREPSLKVAELLASWPQTRTEVRNAHDESPLMLAALKGFLPLVKKLVNNDADVNK----PGWTPLHYAA---------------------------------------TGGHVPVIEFLLDESAYIDAESPNGTTPLMMAAMYGSPEAVKALIQAGADLTLKNQQGMTALDFAVRGQRANARELIE 210
BLAST of mRNA_P-littoralis_Contig63.25.8 vs. uniprot
Match: A0A6L4YDN0_9RHOO (Ankyrin repeat-containing protein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A6L4YDN0_9RHOO) HSP 1 Score: 55.8 bits (133), Expect = 8.900e-5 Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 106 TPMLLEAVHRVNVPRAAALLLRGADVNTTDAQGVTPLIIACERGEMRMVDLLLEARASTKMVTNDTQSSCLHIAAKNNAAEIVARLLKVD 375
T +LL A+ R N+P LL D++ TD QG++PL+ A +RGE +MV +L++ AS +V ++S L A +NN + L KV+
Sbjct: 126 TQVLLNAIQRSNLPYVKTLLTMDFDLDITDEQGMSPLMCAAQRGEFKMVQMLIKRGASPFLVGPSGKASDL--ALQNNFPAVNEFLKKVE 213 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.25.8 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig63.25.8 >prot_P-littoralis_Contig63.25.8 ID=prot_P-littoralis_Contig63.25.8|Name=mRNA_P-littoralis_Contig63.25.8|organism=Pylaiella littoralis U1_48|type=polypeptide|length=949bp RRQSAVPPPAHPLQTVTSTSPRSTQAHRLAPGAYTTPMLLEAVHRVNVPRback to top mRNA from alignment at P-littoralis_Contig63:160814..170919- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig63.25.8 ID=mRNA_P-littoralis_Contig63.25.8|Name=mRNA_P-littoralis_Contig63.25.8|organism=Pylaiella littoralis U1_48|type=mRNA|length=10106bp|location=Sequence derived from alignment at P-littoralis_Contig63:160814..170919- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig63:160814..170919- >mRNA_P-littoralis_Contig63.25.8 ID=mRNA_P-littoralis_Contig63.25.8|Name=mRNA_P-littoralis_Contig63.25.8|organism=Pylaiella littoralis U1_48|type=CDS|length=2847bp|location=Sequence derived from alignment at P-littoralis_Contig63:160814..170919- (Pylaiella littoralis U1_48)back to top |