mRNA_P-littoralis_Contig63.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.69.1
Unique NamemRNA_P-littoralis_Contig63.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:357685..358412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size729
Hectar predicted targeting categorychloroplast
Exons1
Cds size591
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791311.2244644-UTR-P-littoralis_Contig63:357684..3578211680791311.2244644-UTR-P-littoralis_Contig63:357684..357821Pylaiella littoralis U1_48UTRP-littoralis_Contig63 357685..357821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791311.235248-CDS-P-littoralis_Contig63:357821..3584121680791311.235248-CDS-P-littoralis_Contig63:357821..358412Pylaiella littoralis U1_48CDSP-littoralis_Contig63 357822..358412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.69.1prot_P-littoralis_Contig63.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 357822..358412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.69.1

>prot_P-littoralis_Contig63.69.1 ID=prot_P-littoralis_Contig63.69.1|Name=mRNA_P-littoralis_Contig63.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=197bp
MRSLWLAGVATASSLSSAAGGMSTPLTAAASASASCVLRGLGSTLPRTRY
VPSRRSRSSTAAASRAAAFVMPPPSYSTTTKTSTWVSTAAATRGRQRQQH
ASTSAPAMTTTTMATTMTTTTTMAVAGTRRPRVAAFSSISGEAVAGAVGV
GSRPSSQQRRMMMSSEAAAAAAAVQGGDHAAPVPALENQGRVEGEEE
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mRNA from alignment at P-littoralis_Contig63:357685..358412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.69.1 ID=mRNA_P-littoralis_Contig63.69.1|Name=mRNA_P-littoralis_Contig63.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=728bp|location=Sequence derived from alignment at P-littoralis_Contig63:357685..358412+ (Pylaiella littoralis U1_48)
CCTTCGACCGATTATCCTCAACAATCTTGACCATCGCTTGATCTGCTCGC
AAGAGGTGGTACATTCGAAACCTTAAAAATATCTACTGTTCGCTGTAGCT
GTTGCTGCTGTTACTGCTGCTGCCGAGAGGTTGAGGAATGCGAAGCCTCT
GGTTAGCAGGTGTGGCCACGGCATCCTCCCTTTCGTCGGCAGCAGGCGGA
ATGTCGACACCCCTGACTGCTGCTGCTTCTGCTTCTGCTTCTTGTGTCCT
GCGAGGCCTTGGAAGTACTCTCCCGCGGACGCGATATGTCCCAAGTCGAA
GAAGCCGGTCGTCTACAGCGGCAGCAAGTAGAGCAGCAGCCTTCGTGATG
CCGCCACCGTCTTACAGCACCACCACAAAAACGTCAACTTGGGTGTCCAC
AGCAGCAGCTACTCGAGGGCGACAGCGGCAGCAGCATGCTTCAACTTCCG
CACCCGCGATGACGACGACGACGATGGCGACGACGATGACGACGACGACA
ACTATGGCGGTGGCAGGAACGCGACGGCCGCGAGTGGCGGCTTTTTCTTC
GATCTCGGGTGAGGCTGTCGCTGGTGCTGTTGGAGTTGGCAGCAGGCCGT
CTTCGCAACAACGACGCATGATGATGTCGTCGGAGGCCGCCGCTGCTGCT
GCTGCGGTTCAGGGCGGCGACCACGCGGCTCCTGTACCAGCACTGGAAAA
CCAGGGAAGGGTAGAGGGAGAGGAGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:357685..358412+

>mRNA_P-littoralis_Contig63.69.1 ID=mRNA_P-littoralis_Contig63.69.1|Name=mRNA_P-littoralis_Contig63.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=591bp|location=Sequence derived from alignment at P-littoralis_Contig63:357685..358412+ (Pylaiella littoralis U1_48)
ATGCGAAGCCTCTGGTTAGCAGGTGTGGCCACGGCATCCTCCCTTTCGTC
GGCAGCAGGCGGAATGTCGACACCCCTGACTGCTGCTGCTTCTGCTTCTG
CTTCTTGTGTCCTGCGAGGCCTTGGAAGTACTCTCCCGCGGACGCGATAT
GTCCCAAGTCGAAGAAGCCGGTCGTCTACAGCGGCAGCAAGTAGAGCAGC
AGCCTTCGTGATGCCGCCACCGTCTTACAGCACCACCACAAAAACGTCAA
CTTGGGTGTCCACAGCAGCAGCTACTCGAGGGCGACAGCGGCAGCAGCAT
GCTTCAACTTCCGCACCCGCGATGACGACGACGACGATGGCGACGACGAT
GACGACGACGACAACTATGGCGGTGGCAGGAACGCGACGGCCGCGAGTGG
CGGCTTTTTCTTCGATCTCGGGTGAGGCTGTCGCTGGTGCTGTTGGAGTT
GGCAGCAGGCCGTCTTCGCAACAACGACGCATGATGATGTCGTCGGAGGC
CGCCGCTGCTGCTGCTGCGGTTCAGGGCGGCGACCACGCGGCTCCTGTAC
CAGCACTGGAAAACCAGGGAAGGGTAGAGGGAGAGGAGGAG
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