mRNA_P-littoralis_Contig63.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.38.1
Unique NamemRNA_P-littoralis_Contig63.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:207675..208167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size493
Hectar predicted targeting categorysignal anchor
Exons1
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791311.172998-CDS-P-littoralis_Contig63:207674..2081331680791311.172998-CDS-P-littoralis_Contig63:207674..208133Pylaiella littoralis U1_48CDSP-littoralis_Contig63 207675..208133 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791311.189947-UTR-P-littoralis_Contig63:208133..2081671680791311.189947-UTR-P-littoralis_Contig63:208133..208167Pylaiella littoralis U1_48UTRP-littoralis_Contig63 208134..208167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.38.1prot_P-littoralis_Contig63.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 207675..208133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.38.1

>prot_P-littoralis_Contig63.38.1 ID=prot_P-littoralis_Contig63.38.1|Name=mRNA_P-littoralis_Contig63.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
MSRRSLFFREFPGKKSCNISDGMICREGFMAGQWCPTSYAHFHVWFLLLL
LLLLLLLLHGMMCIAPRLLSRAMWQALLTTLLLCSRRGCFNDKHASAAAL
CIHLFRELPEHQLEQNDFTHSLKRVAEPCPYNHHSTRRGRPSWKGRGGGK
HS*
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mRNA from alignment at P-littoralis_Contig63:207675..208167-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.38.1 ID=mRNA_P-littoralis_Contig63.38.1|Name=mRNA_P-littoralis_Contig63.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=493bp|location=Sequence derived from alignment at P-littoralis_Contig63:207675..208167- (Pylaiella littoralis U1_48)
GGGATAATTACGCGCCTCAGAACGCCACCGTCGAATGAGCAGACGATCCC
TTTTTTTCCGTGAATTTCCAGGCAAGAAGAGTTGCAACATAAGCGACGGG
ATGATTTGCCGAGAGGGCTTCATGGCTGGCCAATGGTGTCCAACGTCTTA
CGCACACTTCCATGTGTGGTTTTTGCTGCTGCTCTTGTTGTTGCTGCTGC
TGCTGCTGCACGGGATGATGTGCATCGCGCCTCGGCTGTTGTCGCGAGCG
ATGTGGCAAGCACTTTTAACAACGCTGTTGTTGTGCTCGAGGAGGGGGTG
CTTCAATGATAAACATGCGTCAGCTGCGGCATTATGTATACATTTGTTCC
GCGAGCTACCAGAGCATCAGCTTGAGCAAAATGACTTCACACATTCTCTC
AAAAGGGTCGCAGAACCGTGTCCGTACAACCATCATAGTACACGGAGAGG
GCGACCTAGCTGGAAGGGGAGGGGAGGGGGGAAGCATTCATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:207675..208167-

>mRNA_P-littoralis_Contig63.38.1 ID=mRNA_P-littoralis_Contig63.38.1|Name=mRNA_P-littoralis_Contig63.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig63:207675..208167- (Pylaiella littoralis U1_48)
ATGAGCAGACGATCCCTTTTTTTCCGTGAATTTCCAGGCAAGAAGAGTTG
CAACATAAGCGACGGGATGATTTGCCGAGAGGGCTTCATGGCTGGCCAAT
GGTGTCCAACGTCTTACGCACACTTCCATGTGTGGTTTTTGCTGCTGCTC
TTGTTGTTGCTGCTGCTGCTGCTGCACGGGATGATGTGCATCGCGCCTCG
GCTGTTGTCGCGAGCGATGTGGCAAGCACTTTTAACAACGCTGTTGTTGT
GCTCGAGGAGGGGGTGCTTCAATGATAAACATGCGTCAGCTGCGGCATTA
TGTATACATTTGTTCCGCGAGCTACCAGAGCATCAGCTTGAGCAAAATGA
CTTCACACATTCTCTCAAAAGGGTCGCAGAACCGTGTCCGTACAACCATC
ATAGTACACGGAGAGGGCGACCTAGCTGGAAGGGGAGGGGAGGGGGGAAG
CATTCATAG
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