mRNA_P-littoralis_Contig63.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.19.1
Unique NamemRNA_P-littoralis_Contig63.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:112404..113298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size895
Hectar predicted targeting categoryother localisation
Exons1
Cds size522
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791311.110518-UTR-P-littoralis_Contig63:112403..1124481680791311.110518-UTR-P-littoralis_Contig63:112403..112448Pylaiella littoralis U1_48UTRP-littoralis_Contig63 112404..112448 +
1680791311.1380959-UTR-P-littoralis_Contig63:112970..1132981680791311.1380959-UTR-P-littoralis_Contig63:112970..113298Pylaiella littoralis U1_48UTRP-littoralis_Contig63 112971..113298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791311.1254408-CDS-P-littoralis_Contig63:112448..1129701680791311.1254408-CDS-P-littoralis_Contig63:112448..112970Pylaiella littoralis U1_48CDSP-littoralis_Contig63 112449..112970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.19.1prot_P-littoralis_Contig63.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 112449..112970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.19.1

>prot_P-littoralis_Contig63.19.1 ID=prot_P-littoralis_Contig63.19.1|Name=mRNA_P-littoralis_Contig63.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
MSGFACDVCNKAFSTQQSLDQHTRSNPRSHEFKICDECHKTFSTQEALDQ
HTRSNPRSHFKICDKCDKSFSTQEALDQHTRSNPRSHIIVCDNCRRRFKT
LKEKKEHTDSRHMCKVCKDIFCDDIDMAQHQYDMHMNRCTHCGKIFDNKH
SAVAHIMANHLESTKVDGVDSRG*
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mRNA from alignment at P-littoralis_Contig63:112404..113298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.19.1 ID=mRNA_P-littoralis_Contig63.19.1|Name=mRNA_P-littoralis_Contig63.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=895bp|location=Sequence derived from alignment at P-littoralis_Contig63:112404..113298+ (Pylaiella littoralis U1_48)
AGATTCATTACCAACGAAACCATCTTCATCGAATCAAGATCCAATATGTC
CGGATTCGCCTGCGACGTGTGCAACAAGGCCTTCTCCACACAACAGTCTC
TGGATCAGCACACGAGATCTAACCCGAGGTCTCATGAGTTCAAGATCTGC
GACGAGTGCCACAAGACCTTCTCCACGCAGGAGGCTCTGGATCAACACAC
GAGATCTAACCCGAGGTCTCATTTCAAGATCTGCGACAAGTGTGACAAGT
CCTTCTCCACACAGGAGGCTCTGGATCAACACACGAGATCTAACCCAAGG
TCTCATATCATTGTATGTGACAACTGCAGGAGACGCTTCAAGACTCTGAA
AGAGAAGAAGGAGCATACAGACAGTCGACACATGTGTAAGGTGTGCAAGG
ACATCTTCTGCGATGATATTGATATGGCCCAGCATCAATACGACATGCAC
ATGAATAGATGCACGCATTGTGGTAAAATCTTCGACAACAAGCATTCTGC
TGTTGCACATATTATGGCTAACCACCTGGAGAGTACGAAGGTTGACGGTG
TGGACTCTAGAGGGTAGCTTCATTTTACATAGAAACAGCTGTCGTACCCA
TTTCGCTACTCTGGCAGGGTGGGCCATATTCACATTGCCAGGGTAGAATG
CTGTGACGGACCTTAAAGGGCGGACTCAGATACAGGGTGTGTGAAACGCG
GACCGGCACAGGGTCCAACCTTGCCATGGTCGAAACCTTGGGAAGGTCGC
CATGGAATTTGACCTTGGGTCTAGTGCCGCACCACCGTAACTAGAAAGGT
TAAAGGAATCGAGAAGCAGTGTGAGTTGGAGGGCAGCTTCTCAAATAACT
GCGTTAAGCCGTGTGCGTTGCTGTTTAGTGGTATGATATGCCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:112404..113298+

>mRNA_P-littoralis_Contig63.19.1 ID=mRNA_P-littoralis_Contig63.19.1|Name=mRNA_P-littoralis_Contig63.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig63:112404..113298+ (Pylaiella littoralis U1_48)
ATGTCCGGATTCGCCTGCGACGTGTGCAACAAGGCCTTCTCCACACAACA
GTCTCTGGATCAGCACACGAGATCTAACCCGAGGTCTCATGAGTTCAAGA
TCTGCGACGAGTGCCACAAGACCTTCTCCACGCAGGAGGCTCTGGATCAA
CACACGAGATCTAACCCGAGGTCTCATTTCAAGATCTGCGACAAGTGTGA
CAAGTCCTTCTCCACACAGGAGGCTCTGGATCAACACACGAGATCTAACC
CAAGGTCTCATATCATTGTATGTGACAACTGCAGGAGACGCTTCAAGACT
CTGAAAGAGAAGAAGGAGCATACAGACAGTCGACACATGTGTAAGGTGTG
CAAGGACATCTTCTGCGATGATATTGATATGGCCCAGCATCAATACGACA
TGCACATGAATAGATGCACGCATTGTGGTAAAATCTTCGACAACAAGCAT
TCTGCTGTTGCACATATTATGGCTAACCACCTGGAGAGTACGAAGGTTGA
CGGTGTGGACTCTAGAGGGTAG
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