mRNA_P-littoralis_Contig63.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.79.1
Unique NamemRNA_P-littoralis_Contig63.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:389879..392516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size309
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791311.0678916-CDS-P-littoralis_Contig63:389878..3900321680791311.0678916-CDS-P-littoralis_Contig63:389878..390032Pylaiella littoralis U1_48CDSP-littoralis_Contig63 389879..390032 -
1680791311.0783873-CDS-P-littoralis_Contig63:392361..3925161680791311.0783873-CDS-P-littoralis_Contig63:392361..392516Pylaiella littoralis U1_48CDSP-littoralis_Contig63 392362..392516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.79.1prot_P-littoralis_Contig63.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 389879..392516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.79.1

>prot_P-littoralis_Contig63.79.1 ID=prot_P-littoralis_Contig63.79.1|Name=mRNA_P-littoralis_Contig63.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
DVSACRRVGRQRSVCVPSLTRSIGFESLLKAELAAYSSGTQDRGAFTDPV
LRKRGAETEKTDAITAVASGGGKVGGGGGGGGGMSTSFVVVSGARVGDLS
AGA
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mRNA from alignment at P-littoralis_Contig63:389879..392516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.79.1 ID=mRNA_P-littoralis_Contig63.79.1|Name=mRNA_P-littoralis_Contig63.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2638bp|location=Sequence derived from alignment at P-littoralis_Contig63:389879..392516- (Pylaiella littoralis U1_48)
GACGTGTCGGCGTGTCGGAGGGTGGGGAGGCAAAGAAGTGTATGCGTGCC
TTCATTAACGCGATCCATAGGATTCGAAAGCCTCTTGAAAGCTGAACTGG
CGGCTTATTCTTCCGGCACGCAAGACCGTGGAGCCTTCACGGATCCTGTC
CTAAGGTGAGTGGGCTGAGGGAGGCAGAAAGTAAGATGCCCTTCTTGGAA
GGGTATAAATTAGAGAAATATGGAAAAGGGTGGAAAATCGTGGTGGTTTC
GCGCCCAGGTGTGGGGTGTGTGAACAGCACGGTCTATGGAAGGGATGGCG
AGAGCCGAGGAAAGGGCAATAGGAGGAACACCTGGGGAGTTGCCGTGATC
TGCACATATCGGGGTCGATATATGTCCCCCATCGCAACTGTCGTTGGAAA
GCTGTCAGGCGAACCGTCTCTCTGAACGCGGGTAAATCCCAACTATTTGG
CCACGGAGTTTTCGGTCGTGTTGGCGTTGGTTGTCCGCACCGACACGCGC
GCGCACACACACACCGACCTACCCTTGCGGTTCCAAAGTATTACAGGGAT
GGGGTTCGCTGGCAATGGTCCTGGGGTCGACCCGCTCATGAAGGGATGGT
GTATTCGATTGTGTAGTGGCGGAGCAAAGTGTTGGAGACGGCAGTGGTCC
GACAGAAAAAAAATAGCCACATTTACACACAATGCTTGGTCGACGTCTTC
GCAGCACCGTATCCCTCCTTCCCTTCCATTCCTGGGATCAAGAACAGCAG
TTGCCACAGCAGTTGAGCGCTCTCAACAACAAGGCACACGGCGGTGCGTA
GACCGGTTGCCCGTCTTGCTGCCCGGCATCAGTTTTTCCGTCGCGAGTTG
AAGTTGTTTGAGCGGTTTGCCTCGTGGCTACCGCTGGTCATCGTTGTTGG
CGTTCTGTTGGCGTCTCCCGATGCGGTTTGCTTCTACTCGTACTTCGTAC
ATCGTTCGTACTTGTGCAACAGAAGACAGCAGTGGCGCTGGACCTACTGA
CTCGAACCTCCTCTGTCTCGTTACTGCTGTACGAAGCACAACGCACCATG
CTGCGGCCATACTGTCTGCTGTGCACCTCTCAGGTGATATCATACGGATG
GTGTGGTTTTTCAGACGCCCACTGCTTTTAACTCACCCCAAAATAACTAT
CTATCATAGTAGAACCCCAAGCCGGCTACTGCTTTATGATGGCCCCCGTG
TATGCGGATTTGCAAAATGTGCAACAAGTGCCCTTTGAACTTTGAACAAC
ATGATCGTCTAATACTCCTTATTATACATATATACTCCGGAGTATGCGGC
AGTACAGCAGAGCGTTCGTGAATCGGATGTTCCCAATTCCCAACACGGAC
ATGATGTCTGTTGTACCAAAGAGAGTGGGGAAGGACGGTTGAACGACATA
AGGTGTGTCTCGTCTTCCCCGTTTTAGGTATTATACATGTATCATACGCG
ACTGGCGGTACGCAACCGCAGCAGTACCGGTACGTGTACGTAATGTCACA
CACGAATACATCAGTGTATGCATACAAGTACATCAGGACAGCAGGCACTG
CTGTCGTCGTCCCTCTAGACGAAAGGCTCTACTGCTGTAAGAGAGGATGA
GCAACGAGCCCAAGGTGCAATACTACAAAGCAGTTCCTTAAGCCCATCAG
ATATATTGCACGGCAGCCGGCAGCTCCCGCAAGGACATCATATCAGGCCC
AAGCAGGACAATTTGGAGATCGGCTCTCGTATAGTGGAACCTTTCACAGG
AGGACCGTTTCTGTGCCATGCCCAGTTCGTCTAGCAAATCCGTCAACCGC
GATTATCCGTTTAGCCCATGGTACAGCATACTGGAACAGCAGGAAAGTCC
GCCTGTTTTTTTCGTCTTTTTTTGCATCGATGGCCTCGGGCTTGTTTGTA
ACCTCACGAGCGATCGAGAGAAAAGGAAGACGGTTTAGAGAAAAGTCGAA
GAGAGAGGGGGGGGGGAATGAGGCGCAGAGAAAGAGGGAGGGGGGAGAGA
CGAGACGAGACGGCTTAACTTGCCTGACACCGCCTGTACCGCAAACGATT
GCACAGCGGCAGTCTCGAACGTCCCAGATGCATCAATGGTTTCCGCTTGG
CGCCTTTGTGTGAGTCTATGTACATACTCCTGGAACATGAGACTTGCCCG
CAGAGCTGGAACAGCAGTCAATGCGGTCAGGTAGCCGTCAAAGTGCACTA
ATCTAATTACCAAAAGAAGGCTAGAGGACAGCAGCTGTCGTCGCCGCACG
GGCCAGTGTGGTTGTGGTGCATACAGCAGTGGAAGGGTTTCGCATGAATG
TTGCCAAAAATGGCGCGTCCTACATCACGAGCTGTGTTTCGAAACATTTT
GGAAAAATTGGATTTTTTTGCGTTATACCTTTGGACGATTGTTCGTGTGA
TACGGTATGTCGGATGTATCATGTCATATCATATTACATCAGATCATAAG
ACTTTGATTTTTCCTCCCTTCCGCAACATTCCAGGAAACGCGGGGCGGAG
ACCGAAAAGACTGACGCAATCACGGCAGTAGCGAGCGGCGGTGGCAAGGT
CGGCGGCGGCGGCGGCGGCGGCGGCGGCATGTCAACGTCTTTTGTAGTGG
TATCGGGGGCGCGGGTGGGAGACCTATCTGCAGGGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:389879..392516-

>mRNA_P-littoralis_Contig63.79.1 ID=mRNA_P-littoralis_Contig63.79.1|Name=mRNA_P-littoralis_Contig63.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig63:389879..392516- (Pylaiella littoralis U1_48)
GACGTGTCGGCGTGTCGGAGGGTGGGGAGGCAAAGAAGTGTATGCGTGCC
TTCATTAACGCGATCCATAGGATTCGAAAGCCTCTTGAAAGCTGAACTGG
CGGCTTATTCTTCCGGCACGCAAGACCGTGGAGCCTTCACGGATCCTGTC
CTAAGGAAACGCGGGGCGGAGACCGAAAAGACTGACGCAATCACGGCAGT
AGCGAGCGGCGGTGGCAAGGTCGGCGGCGGCGGCGGCGGCGGCGGCGGCA
TGTCAACGTCTTTTGTAGTGGTATCGGGGGCGCGGGTGGGAGACCTATCT
GCAGGGGCG
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