mRNA_P-littoralis_Contig63.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.41.1
Unique NamemRNA_P-littoralis_Contig63.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:209499..212168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size820
Hectar predicted targeting categoryother localisation
Exons2
Cds size819
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791310.9241283-CDS-P-littoralis_Contig63:209498..2102121680791310.9241283-CDS-P-littoralis_Contig63:209498..210212Pylaiella littoralis U1_48CDSP-littoralis_Contig63 209499..210212 -
1680791310.9350686-CDS-P-littoralis_Contig63:212063..2121681680791310.9350686-CDS-P-littoralis_Contig63:212063..212168Pylaiella littoralis U1_48CDSP-littoralis_Contig63 212064..212168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.41.1prot_P-littoralis_Contig63.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 209499..212168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.41.1

>prot_P-littoralis_Contig63.41.1 ID=prot_P-littoralis_Contig63.41.1|Name=mRNA_P-littoralis_Contig63.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=273bp
MYLNTKRSFGGVLAENALQDAENPGAENSTRRRTQSKSPTRGGRENSPFR
GSNKQQGAKKSTRRESAGQQQRQSGASLSPERAGRVQSAGGVTGVAGQTD
AGAGAGVAVGSSRRSVGSSGGSTAGAGVAVTLSDEAESAAGAAAKQQTSA
GGTAQQQQQAAVPSGSIAASLSSSSSSAASATAASEPASASPSASASASS
SASALGQAAVGPEMTVSGRKRATAAAKAKAKAKAKQQQEAAAAAAAATAA
SSSPLFAQMSRAERKSRQAMEKL
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mRNA from alignment at P-littoralis_Contig63:209499..212168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.41.1 ID=mRNA_P-littoralis_Contig63.41.1|Name=mRNA_P-littoralis_Contig63.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2670bp|location=Sequence derived from alignment at P-littoralis_Contig63:209499..212168- (Pylaiella littoralis U1_48)
ATGTATCTAAATACGAAGCGATCTTTCGGAGGGGTCCTCGCGGAGAACGC
CTTGCAAGACGCGGAGAACCCTGGCGCTGAAAACTCGACGCGCAGGAGGA
CACAGGTACGCGAAAAGTGAAGTGGTTTGGCGCACGTGGTAATCAAGCCA
CCACACCGCCTCCTGTTCGAGCGAACTTTGCCCTATCGAATATGATCGAC
TGACACAATATACAGCGGTGCAGACACGTTCGGGGTGCAGGTTTTGGGTT
CCACCTTGCTTCTGAAAGAAAGAGGACCACATTGCATGAACAGGCTTGAG
CAAGGAATCACGATATCAGCAACACTGCTACTGCTGTTGGTAAATTCGAT
TTCCGACTCAGATGAGCCATTCGCCAAATTCCACACATCTGTCGGTATGC
ACATCGTGCATCGGGTGTCGCCGCGCTACAGTAGCCGTGGATGTTGCTGT
TTTTTTTAAATCCTGCGTCGCTTTAGGCTTTTTGATCTTCCGACCTTTCG
CGCTTCCTACTACCTAGATCATGCCGCCCCCCCCTGATGCACCTCGAATA
CCAGATTATTTTCCCTTTTCTGTCGCGGGTGGCTTGAAAAAATATTTTAT
ATTTTGATTTGTTTGTTGCGTTCATCTTCGGTGCTGCGAATGAATGCTGC
AGCTGATCGTTCGACTCGTGGAAGGAAATTGTACAGTATCGACGGGTGGG
TGTCCCCTTACAGTACAGGAATCCTCACGCCTAACACCCACGTCGAATCA
AGCAGATTCGGACGAGAAAGTAGAGAAAACTTGTGTGTGTGTTTGTGTGT
GTGTGTGTGTGTGTGTAAAAGTTGTGCCAATGTCGAAGACTCCAACCAAA
ACACCATAAAGGCATTCATTGCTGCAGAGCGGGGCCCTCCTCTATGTACA
CGCCTTCGTACGATACGCCCACCCAATCGCTCTTCTGATTGATGCCCAGC
AACCATTTCATTTAGGTCGCCCGATGTCAGAAAAAGTATGATACCGTAGG
CATTTTTTTTGTCACGCATGGAACTCCTCTGCTGCGTGGTGTGTATTTTT
AGCCTGCAGGCAAACGTCTGGGTGTGAATTCGATCCCGTTCGGGTTTGAT
GATGGATTCCGCACCACCGGATCCGCCAACCGTAACCAGCCGGCGAGAGC
TGTCCACCGTTGCTCCGGTGCCGCGCCCCGGAGCAGCGCCCCCCGTTTTC
CAACGCGTGATCGCCGGGGCGACGAAAAAGGTTCCTCTACCTTCCTCAGC
TGCGAGTGGGGGACTTCCACCACGTCCTGTGTTGTCCCGGATGGAGCTCT
ACACGGACGTAAAAGATAGATTTGACGTGGTCGTGCCGAGCTGCGCGCAA
AAAAACACCACACACTCTCGAAGGCACCAGCACGCGAAAAGGGTCCGCGC
TGCTGGGGAGTGCGTACGTTCTGTAACGGGCTGGGGGGCACCTCTCACTT
GATTCATCGAAGCATATGATATCATACATGTAGGCTTTCGGACAATGCCG
TTCCAAATTCCTCCCCCTTGTTCTGGTAGATGGTTAGAGTGAAAATGAGA
GTTTCATTAGCCACTCCTCAGAACATTTATTTTCCCCAGCATTGCAGCGT
CTCAATTTCAGCGCCGGATGAAGCCCTCTTCTTGTGCCGAGGTCTTCGAC
TTTTTGCTGACATGCCGCGCGCTCTCTCGAAAAAGTTGTTGAATACTCAG
GGCACCGTGATTCTACTTGTCGACGTTGTTGCTTAAGTATACATCCCTTT
TTTTTTTTATCGAAATGTTTTGACAAATACATTTTTATTCAAATTCTTAC
CCACGCTTCTCCCCCCTCCGCCTTCTCCATGCACCTTCGCGCCACTCGTC
CGTCTCGTATGTGTGTGTGTGGTGTACCTTGCAACAATTCATCGATCTGC
CATCCCGCCAATTACGCTGAAACTCATGAACAATACCGGGCCGGGGCCGC
ATGCAGAGCAAGAGTCCCACCAGGGGAGGGCGCGAAAATTCGCCCTTCCG
CGGCAGCAACAAGCAGCAGGGTGCCAAGAAGTCGACACGCCGAGAGTCGG
CCGGGCAACAGCAGCGGCAGTCCGGGGCCAGCCTCTCACCGGAGCGTGCC
GGTCGGGTTCAGTCCGCCGGAGGGGTTACCGGTGTCGCGGGGCAGACCGA
TGCCGGCGCTGGCGCAGGCGTTGCAGTCGGCAGCAGCAGGAGGAGTGTCG
GCAGTAGCGGTGGTTCCACCGCAGGAGCAGGGGTAGCTGTGACTCTATCT
GATGAGGCGGAGAGTGCCGCGGGAGCTGCTGCGAAACAGCAGACGTCTGC
AGGAGGAACAGCACAGCAACAGCAACAGGCGGCAGTGCCTTCAGGCTCCA
TCGCGGCCTCCCTTTCCTCATCCTCCTCCTCCGCTGCGTCCGCGACGGCG
GCATCGGAACCAGCATCAGCGTCACCGTCAGCGTCAGCTTCAGCGTCATC
TTCAGCGTCAGCATTGGGACAAGCAGCGGTTGGGCCGGAGATGACGGTAA
GCGGCAGGAAGAGAGCGACGGCGGCGGCTAAGGCCAAGGCCAAGGCTAAG
GCTAAGCAACAACAGGAAGCGGCGGCAGCAGCGGCAGCGGCGACAGCAGC
GTCATCGTCGCCATTGTTCGCACAGATGAGCCGTGCCGAGAGAAAGAGCC
GCCAGGCGATGGAGAAGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:209499..212168-

>mRNA_P-littoralis_Contig63.41.1 ID=mRNA_P-littoralis_Contig63.41.1|Name=mRNA_P-littoralis_Contig63.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=819bp|location=Sequence derived from alignment at P-littoralis_Contig63:209499..212168- (Pylaiella littoralis U1_48)
ATGTATCTAAATACGAAGCGATCTTTCGGAGGGGTCCTCGCGGAGAACGC
CTTGCAAGACGCGGAGAACCCTGGCGCTGAAAACTCGACGCGCAGGAGGA
CACAGAGCAAGAGTCCCACCAGGGGAGGGCGCGAAAATTCGCCCTTCCGC
GGCAGCAACAAGCAGCAGGGTGCCAAGAAGTCGACACGCCGAGAGTCGGC
CGGGCAACAGCAGCGGCAGTCCGGGGCCAGCCTCTCACCGGAGCGTGCCG
GTCGGGTTCAGTCCGCCGGAGGGGTTACCGGTGTCGCGGGGCAGACCGAT
GCCGGCGCTGGCGCAGGCGTTGCAGTCGGCAGCAGCAGGAGGAGTGTCGG
CAGTAGCGGTGGTTCCACCGCAGGAGCAGGGGTAGCTGTGACTCTATCTG
ATGAGGCGGAGAGTGCCGCGGGAGCTGCTGCGAAACAGCAGACGTCTGCA
GGAGGAACAGCACAGCAACAGCAACAGGCGGCAGTGCCTTCAGGCTCCAT
CGCGGCCTCCCTTTCCTCATCCTCCTCCTCCGCTGCGTCCGCGACGGCGG
CATCGGAACCAGCATCAGCGTCACCGTCAGCGTCAGCTTCAGCGTCATCT
TCAGCGTCAGCATTGGGACAAGCAGCGGTTGGGCCGGAGATGACGGTAAG
CGGCAGGAAGAGAGCGACGGCGGCGGCTAAGGCCAAGGCCAAGGCTAAGG
CTAAGCAACAACAGGAAGCGGCGGCAGCAGCGGCAGCGGCGACAGCAGCG
TCATCGTCGCCATTGTTCGCACAGATGAGCCGTGCCGAGAGAAAGAGCCG
CCAGGCGATGGAGAAGCTG
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