mRNA_P-littoralis_Contig1161.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1161.12.1
Unique NamemRNA_P-littoralis_Contig1161.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1161.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1161contigP-littoralis_Contig1161:58702..62209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size180
Hectar predicted targeting categoryother localisation
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789483.153072-CDS-P-littoralis_Contig1161:58701..587771680789483.153072-CDS-P-littoralis_Contig1161:58701..58777Pylaiella littoralis U1_48CDSP-littoralis_Contig1161 58702..58777 +
1680789483.1639075-CDS-P-littoralis_Contig1161:62106..622071680789483.1639075-CDS-P-littoralis_Contig1161:62106..62207Pylaiella littoralis U1_48CDSP-littoralis_Contig1161 62107..62207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1161.12.1prot_P-littoralis_Contig1161.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1161 58702..62207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1161.12.1

>prot_P-littoralis_Contig1161.12.1 ID=prot_P-littoralis_Contig1161.12.1|Name=mRNA_P-littoralis_Contig1161.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
PSARGYDVGAAGHHPAASQPYCATLGSISVSYVLASRLRCRRPEVVTRAE
FELQVQAGE
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mRNA from alignment at P-littoralis_Contig1161:58702..62209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1161.12.1 ID=mRNA_P-littoralis_Contig1161.12.1|Name=mRNA_P-littoralis_Contig1161.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3508bp|location=Sequence derived from alignment at P-littoralis_Contig1161:58702..62209+ (Pylaiella littoralis U1_48)
CCATCGGCGCGAGGCTACGACGTGGGAGCGGCCGGACACCATCCAGCCGC
GAGTCAGCCCTACTGCGCCACACTCGGTACGAGCGACGCATGTAACATTG
TTAGGACTGAAAGGAAAATCGCCTGTTGTGTGGCTGTGCGCGGATACGCG
CTTCGTATGCGGATAGGCACGGAGTAGGTATGGCTAGGGTTAGGGCCGAG
CCTAAGGAGGCATATTATGCACATTACCATCTGGTGGGCACACAGTAGAA
CACCACGTTACACGCGCTGCCGGTGCAGCGTAGACGCACGACGCACTACT
GCGCAATACGTGCGTACGTCAACACAAGCTGTCATCTCGTTACACATTTG
ACATGAGACCTGCCAGGAGGTAACGATACACAGCAGTGGATGTTCGCACA
TCGTATTAATGTCGACAGCCGTCGCACGCCGGTCATCTAAAAACCGGGCG
AACCCATACCAGAGATCACTGACACACGCATTGGGGCACAGCGTAGGGAC
GCTGCACGCGTTCTGTCGCTAACGGGCGCGCGTGGCCATGGGTCTAATAT
ATCGTCTCACATTTGTCAAGGGACATGTCATAGGGTACCACGATGCGATC
ATATGAGAGTTGAGACTGTCGCACGCCACAGAGCGAGTTACCTTCATACC
AACCTGAGGCTGCCGGCGCAGCACAGGTGCAGATAGCCATAACGTAGTCC
ACTATCGCGCATTTCGCACTTGGTACGTACGAGGTACCGGATGCAGGTTC
CGTAATGAGGTCACCAGGACATGGTCGGACGAAACAAAAACAAAAAAGCG
GGTCACCCAAATCCAACTTTGATACGTGGTACAGAGACCGCCGCCCACAC
AATGGCGGAGAATGGAAGTTGTAGGCGTCATTCGACGCAGGGCCAACGAT
ACTGTTACCATGAGCCACCACTGCTGTCCGATTGTTGCGCGATCCACGAT
ATCATGTCGTGAGATCGCACACACAACGGTCAGAGAGGGCACATAGCAGC
AGTAGTAGTCACATATATCGTTGCACATACACGACGACTCGACAGTCAAC
GCCGTGAGGTCAACTACATTAACAATATACCAAAGTATATAATGCTTCGA
CTACAGGGTGTGAACCGGAGTTGCAGGCGTCATACGACGCAGGGCAAAAT
ATGCTATTACCATGCGCCACCGCTGCTGTCCGATTGTTGCGCTATCCACA
ACGTCCATGTAGTGAGTTCACGCACACAACGGGCAGGGAGGGCACGCAGT
AGCGGTAATAGTCGCTTATATCGCTGCACATTACACGACGATTTGCCAGT
CAATGCCGTGAGGTCAACTACATCTATTATCAATATACCGAAGTATGTGA
TACTCCAACTCGTGGGTGTAGTCGACGTAGTTGACCACACCGGAGAGAAA
AATCCAGCAGTCTGAATCGAATCATAATACAAGGAGACGAGAGAAATAAA
CCCGGAGGTTTCGAGTTTAACACATGTATTAGAGGGTGTAGTCGACGTAG
TCGACCACACAGGGTAAATTCAGCATAGCTGAAGTCATGATATACCAAAA
TATATGATACTCCGACTCGAGGGTGTAGCCGACGTCGTCGACTACACGGA
AGAGGGGAAAAACAAAACTCAGCGGGTCTGAACCGAAAAGATAATACAAC
GAGACGAGGGACACCAACCTGGGGGTTCGAGTTCAACGCATGTATTATAG
GATGTAGTCGACGCAGTCGACTATAGGGTGTAGTCGACGTAGTCGACCAC
ACAGGGTAAATTCAGCGATTCTGAAATAAAAGATATACCAAAGTATATGA
TACTCCGACTCGAGGGTGCAGCCGACGTAGTCGACCACACGGGAGAGGGG
AAACACTAAAATTCAGCGGGCTGAACCGAAAGATAATACAAAGAGACGAA
AGTGCCATCGCCTGATATCACCAGTGTGTGATGCGGGCGGGATAATACGT
GTGTTGTATGCGAGAACCGCCGGGTTCGTTTTTCTCTTTGTATTATCTTC
CGTTTCAGCCTTGCTGAATTTCCCCTTTGTGGTCGACTGAGTCGACTACA
CCCTATAATACATGCGTTGTACTCGAAACCCCCGGGTTTGCGAGAAGCAG
GTTTTGCCCACATCCTCGCGTCCCGTAGTTTTGCCACGGTAACCGCGAGA
GTAACATAACGCGTGCGATATACAGCGAAGCTCGTACAAATCCGCATGTC
TGCGCATTACGGAAAACCCCGCGTTGTTGTCGCGGTGCACTCCGCACAAT
TACGATATCAAGAGGCCGGCGCCTCGACCGACGTAGTGCCACCAATGTCG
TTTTGTTTTGTTTTTCGTTGTCGCGGTGCACTCCGCACAATTACGATGTC
AAGAGGCCGGCGCCTCGACCGAAGTGGTGCCACCAATGTCGTTTTGTTTT
GTTTTTCGCAAGGGTGGAAAATCGGCATGGCCCATAAAATCCGCGTAACA
CCATCTGCTGTCGCTGTCATACGTACCCATGACCATTGGCCGGCGCCAAA
AACCTCAATAGTACCAGCAGGGCCGCGGTTCTCACAAGTATGGAAAATAG
GTTCGGCACGTAGTTCTGCGTACCATAAGAACGAAGACAAACATACATAT
GGCACCGAAATTAGGGTCTGTTAAAGCAGGAACAGCACCGTTTACTCGAA
GTTCCCACCGGCGTGGCGGTAGAATAAACAGGATTTTCGATTCGGCATGG
AGTAACCGGCCCCGCGGCGTGGAGACACGCGCACGGGATAAGTAAGTGGT
CAGGTGCAGCTATGGTCCCACTCTTATCTCACGATTGCGAACCCACCTGT
CTGGTTTTAATTTGGCGATGAATTTGTGTTTTCCCAAGAGGTTTTTTTTC
TTTTCGGAGCCAACATTACTATCAGGAGAGAGGAGTCACAACCAGGCTTT
AGACACTGCAGCAGGCACGTATACACGGAATCGTACGGCGCACACCTATC
GCACATACGTCACGCCGTAGGCACTAACAGGGCAGATACGGTGCGATACC
AAAGGTCGCACCCAGCCTGTATACAGCAGTTGCACAAAAACCGCATGTTA
GTACGGGCGAAGTGCCCAGGGTGATCCGGGGTAGGTAGCGGGGCATGCGC
ACTTATCCTCAAATTCCATGTGAAATATGCCGGCGCATGCTGATCGGACT
ACGAGGGTAAATAAAAGCACCGGCGGGGCGTGGTGATCGGTATCACTCAC
GAAGAAATATGATGACGGGGTGTGGGTGCAACATATGCCACCCACGGTTA
AAGGCGTCGAACGTGCCGGAGCACGAGGTTGTCACGCGTTAACCAGGCCC
GCTGCTATGTTCCACCTCAATCATTTGCTGACCCCGCCCCTCCGCGGTGC
CCTGCCCGCCCCACCCCTTTGGACACGATCATCGGATTCATCGAATAAAT
TCCAGGTAGTATTTCGGTTTCCTATGTCCTCGCCAGCCGACTCCGATGCC
GACGTCCAGAAGTGGTGACGAGAGCTGAGTTCGAGCTGCAGGTGCAAGCC
GGAGAAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1161:58702..62209+

>mRNA_P-littoralis_Contig1161.12.1 ID=mRNA_P-littoralis_Contig1161.12.1|Name=mRNA_P-littoralis_Contig1161.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig1161:58702..62209+ (Pylaiella littoralis U1_48)
CCATCGGCGCGAGGCTACGACGTGGGAGCGGCCGGACACCATCCAGCCGC
GAGTCAGCCCTACTGCGCCACACTCGGTAGTATTTCGGTTTCCTATGTCC
TCGCCAGCCGACTCCGATGCCGACGTCCAGAAGTGGTGACGAGAGCTGAG
TTCGAGCTGCAGGTGCAAGCCGGAGAA
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