mRNA_P-littoralis_Contig629.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig629.1.1
Unique NamemRNA_P-littoralis_Contig629.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig629.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig629contigP-littoralis_Contig629:2..1063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1062
Hectar predicted targeting categoryother localisation
Exons1
Cds size585
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791309.7443686-UTR-P-littoralis_Contig629:1..3821680791309.7443686-UTR-P-littoralis_Contig629:1..382Pylaiella littoralis U1_48UTRP-littoralis_Contig629 2..382 +
1680791309.7675533-UTR-P-littoralis_Contig629:967..10631680791309.7675533-UTR-P-littoralis_Contig629:967..1063Pylaiella littoralis U1_48UTRP-littoralis_Contig629 968..1063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791309.7542698-CDS-P-littoralis_Contig629:382..9671680791309.7542698-CDS-P-littoralis_Contig629:382..967Pylaiella littoralis U1_48CDSP-littoralis_Contig629 383..967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig629.1.1prot_P-littoralis_Contig629.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig629 383..967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig629.1.1

>prot_P-littoralis_Contig629.1.1 ID=prot_P-littoralis_Contig629.1.1|Name=mRNA_P-littoralis_Contig629.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=195bp
MLPRFSCGSVHNHERTYHVSLFGHSRIWNLESKRQIAVWPSSSCCNCFAP
TTEDCLVKALTKDTFELRGFGDVSAFEMLCFHVFLTFRFLGLLVSNRMFQ
FSGSCFEHIFWMGEWTCSEVFRKIPFTPDISRDIDMLFQCSSLNNISTLL
RAGGMLDVLAAACDRLFNWLQFYGDHRSGTFWIDAGGYVFRMMS*
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mRNA from alignment at P-littoralis_Contig629:2..1063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig629.1.1 ID=mRNA_P-littoralis_Contig629.1.1|Name=mRNA_P-littoralis_Contig629.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1062bp|location=Sequence derived from alignment at P-littoralis_Contig629:2..1063+ (Pylaiella littoralis U1_48)
TGTCTGGTTTCTGATTTCGATTTTGTTTCCGGTTTCATTTTTTCGGGTTT
GCATTTTGTTTGTCTATTTCGAATTTGTCGTTCCAGCACCATGAAGCGCT
GGTGTCAAAGATCATGGGGGGGGATGTGATGCCATGATTCCAGTCGCAGC
GTCAGTTGGATTTCAGCTGTCATATTCTGAGATTTTCTTGTGTCTTTGGT
TGATTTTGTGTTCTCGCCTCCGACTCGCAGAAACAGGAGGGAGAATTTCA
TGTTTTCTCCATGATTTACAAGCATCATTTGGCTTATTTTGTGTTTTCGC
CCCCGACTCGAGAAACAGGGGGGAGAATTTTATGTATTTTGGTTTGAACT
TGTGTTTCAAGTAGTTGTTGGCAAGCTGTTCATGTTACCGCGTTTTTCTT
GTGGTAGTGTTCATAATCATGAACGTACATATCACGTATCACTGTTTGGT
CACTCAAGGATTTGGAATTTGGAATCAAAACGTCAGATTGCCGTTTGGCC
TAGCAGTTCGTGTTGTAATTGTTTTGCACCCACCACCGAGGATTGTCTCG
TCAAAGCTTTGACCAAAGATACATTCGAGTTGCGTGGATTTGGTGATGTA
TCTGCGTTTGAAATGTTATGTTTCCATGTTTTTTTGACTTTCAGATTTCT
TGGATTGTTGGTTTCTAATAGGATGTTTCAATTTTCTGGTTCATGTTTTG
AACATATATTCTGGATGGGCGAGTGGACTTGTTCTGAGGTATTTCGAAAA
ATTCCATTTACTCCGGATATTTCAAGGGATATTGATATGCTTTTCCAGTG
CTCTTCGTTAAATAATATCAGCACGCTGTTACGAGCAGGGGGGATGTTGG
ATGTACTCGCAGCAGCATGCGACCGTTTGTTCAATTGGTTGCAGTTCTAC
GGAGATCATCGTTCTGGAACATTCTGGATCGATGCGGGGGGTTACGTGTT
TCGTATGATGTCGTAGGTGGCTTCTTCTGGGAGCTTTGAGTGCGCCACCC
GAGCGACCGTGTTGCTTCTGTGCTTCTGATCAATCTATCAAGTTCGGCCC
AGTGCCTTCCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig629:2..1063+

>mRNA_P-littoralis_Contig629.1.1 ID=mRNA_P-littoralis_Contig629.1.1|Name=mRNA_P-littoralis_Contig629.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=585bp|location=Sequence derived from alignment at P-littoralis_Contig629:2..1063+ (Pylaiella littoralis U1_48)
ATGTTACCGCGTTTTTCTTGTGGTAGTGTTCATAATCATGAACGTACATA
TCACGTATCACTGTTTGGTCACTCAAGGATTTGGAATTTGGAATCAAAAC
GTCAGATTGCCGTTTGGCCTAGCAGTTCGTGTTGTAATTGTTTTGCACCC
ACCACCGAGGATTGTCTCGTCAAAGCTTTGACCAAAGATACATTCGAGTT
GCGTGGATTTGGTGATGTATCTGCGTTTGAAATGTTATGTTTCCATGTTT
TTTTGACTTTCAGATTTCTTGGATTGTTGGTTTCTAATAGGATGTTTCAA
TTTTCTGGTTCATGTTTTGAACATATATTCTGGATGGGCGAGTGGACTTG
TTCTGAGGTATTTCGAAAAATTCCATTTACTCCGGATATTTCAAGGGATA
TTGATATGCTTTTCCAGTGCTCTTCGTTAAATAATATCAGCACGCTGTTA
CGAGCAGGGGGGATGTTGGATGTACTCGCAGCAGCATGCGACCGTTTGTT
CAATTGGTTGCAGTTCTACGGAGATCATCGTTCTGGAACATTCTGGATCG
ATGCGGGGGGTTACGTGTTTCGTATGATGTCGTAG
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