mRNA_P-littoralis_Contig628.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig628.6.1
Unique NamemRNA_P-littoralis_Contig628.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig628.6.1 vs. uniprot
Match: A0A6H5JFA8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.760e-14
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:  100 MARLARGKVRHERYEECLMAVSTAVICALAGHDDLFLVMGVLALVRLEAYEE 255
            MARLARG++R+ERY+EC++ +  AV+CALAG +D+FLVM +  L +LEAYEE
Sbjct:    1 MARLARGRIRYERYDECMLVLLLAVLCALAGEEDMFLVMAMFGLAKLEAYEE 52
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BLAST of mRNA_P-littoralis_Contig628.6.1 vs. uniprot
Match: A0A6H5JMI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI7_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.750e-14
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:  100 MARLARGKVRHERYEECLMAVSTAVICALAGHDDLFLVMGVLALVRLEAYEE 255
            MARLARG++R+ERY+EC++ +  AV+CALAG +D+FLVM +  L +LEAYEE
Sbjct:    1 MARLARGRIRYERYDECMLVLLLAVLCALAGEEDMFLVMAMFGLAKLEAYEE 52
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BLAST of mRNA_P-littoralis_Contig628.6.1 vs. uniprot
Match: A0A6H5JKA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.050e-13
Identity = 31/52 (59.62%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:  100 MARLARGKVRHERYEECLMAVSTAVICALAGHDDLFLVMGVLALVRLEAYEE 255
            MARL RG++R+ERY+EC+  ++ A++CALAG +DLFLVM +  LV+LEAY+E
Sbjct:    1 MARLERGRIRYERYDECMQIMALALLCALAGEEDLFLVMTMFGLVKLEAYQE 52
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BLAST of mRNA_P-littoralis_Contig628.6.1 vs. uniprot
Match: A0A6H5L0G5_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 9.390e-13
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  100 MARLARGKVRHERYEECLMAVSTAVICALAGHDDLFLVMGVLALVRLEAYEE 255
            MARLARG++R+ERY+EC++ +  AV+CALAG +D+FLVM    L +LEAYEE
Sbjct:    1 MARLARGRIRYERYDECMLVLLLAVLCALAGEEDMFLVMATFGLAKLEAYEE 52
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BLAST of mRNA_P-littoralis_Contig628.6.1 vs. uniprot
Match: A0A6H5KR86_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR86_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.300e-12
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  100 MARLARGKVRHERYEECLMAVSTAVICALAGHDDLFLVMGVLALVRLEAYEE 255
            MARLAR K+R ERY+EC+  +  AV+CALAG +DLFLV+ +L LV+LEAYEE
Sbjct:    1 MARLARAKLRSERYDECITGMLVAVLCALAGEEDLFLVLSLLGLVQLEAYEE 52
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BLAST of mRNA_P-littoralis_Contig628.6.1 vs. uniprot
Match: D7G6Q2_ECTSI (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Q2_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.080e-10
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:  100 MARLARGKVRHERYEECLMAVSTAVICALAGHDDLFLVMGVLALVRLEAYEE 255
            MARLAR ++ HERY ECL  ++ AV+C   GHDDLF+VM  + L+RLE Y E
Sbjct:    1 MARLARARISHERYNECLSVIALAVLCLCLGHDDLFVVMSSVGLLRLEEYHE 52
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BLAST of mRNA_P-littoralis_Contig628.6.1 vs. uniprot
Match: A0A6H5JXV8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.180e-10
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  100 MARLARGKVRHERYEECLMAVSTAVICALAGHDDLFLVMGVLALVRLEAYEE 255
            MARLARGK+R+ERYEE L  ++ A++CA+ G +++FLV+ V+A+ RL AYE+
Sbjct:    1 MARLARGKIRYERYEEFLQMMTAALLCAVVGEEEVFLVLAVVAMQRLRAYEQ 52
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BLAST of mRNA_P-littoralis_Contig628.6.1 vs. uniprot
Match: A0A6H5JUR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.210e-9
Identity = 26/48 (54.17%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:  100 MARLARGKVRHERYEECLMAVSTAVICALAGHDDLFLVMGVLALVRLE 243
            MARLARG++R+E Y+EC+  +  AV+CALAG +D+FLVM +  + +LE
Sbjct:    1 MARLARGRIRYEWYDECMQVLLLAVLCALAGEEDMFLVMAMFGVAKLE 48
[Close]
BLAST of mRNA_P-littoralis_Contig628.6.1 vs. uniprot
Match: A0A6H5JGE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGE1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 4.240e-9
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   79 HTRYTRSMARLARGKVRHERYEECLMAVSTAVICALAGHDDLFLVMGVLALVRLE 243
            H   +  MARLARG++R+E Y+EC+  +  AV+CALAG  D+FLVM +  + +LE
Sbjct:   38 HPTRSEGMARLARGRIRYEWYDECMQVLLLAVLCALAGEGDMFLVMAMFGVAKLE 92
[Close]
BLAST of mRNA_P-littoralis_Contig628.6.1 vs. uniprot
Match: A0A6H5KKL4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL4_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.230e-8
Identity = 25/48 (52.08%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  100 MARLARGKVRHERYEECLMAVSTAVICALAGHDDLFLVMGVLALVRLE 243
            MARLARG++R+E Y+EC+  +  AV+CAL G +D+FLVM +  + +LE
Sbjct:    1 MARLARGRIRYEWYDECMQVLLLAVLCALDGEEDVFLVMAMFGVAKLE 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig628.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JFA8_9PHAE2.760e-1461.54Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMI7_9PHAE3.750e-1461.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKA9_9PHAE1.050e-1359.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0G5_9PHAE9.390e-1361.54DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KR86_9PHAE2.300e-1265.38DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7G6Q2_ECTSI1.080e-1057.69DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JXV8_9PHAE5.180e-1055.77DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUR9_9PHAE1.210e-954.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGE1_9PHAE4.240e-949.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKL4_9PHAE1.230e-852.08Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig628contigP-littoralis_Contig628:15051..15306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6Q2
PFAMsDDE_Tnp_4
Model size257
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.77e-11
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
DescriptionDDE superfamily endonuclease
Cds size255
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.9189816-CDS-P-littoralis_Contig628:15051..153061680791308.9189816-CDS-P-littoralis_Contig628:15051..15306Pylaiella littoralis U1_48CDSP-littoralis_Contig628 15052..15306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig628.6.1prot_P-littoralis_Contig628.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig628 15052..15306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig628.6.1

>prot_P-littoralis_Contig628.6.1 ID=prot_P-littoralis_Contig628.6.1|Name=mRNA_P-littoralis_Contig628.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
GTTPQHQHSTAAQQYSSTAVHPRRVQHTRYTRSMARLARGKVRHERYEEC
LMAVSTAVICALAGHDDLFLVMGVLALVRLEAYEE
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mRNA from alignment at P-littoralis_Contig628:15051..15306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig628.6.1 ID=mRNA_P-littoralis_Contig628.6.1|Name=mRNA_P-littoralis_Contig628.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=256bp|location=Sequence derived from alignment at P-littoralis_Contig628:15051..15306- (Pylaiella littoralis U1_48)
GGCACAACGCCACAGCACCAGCACAGCACAGCAGCACAGCAGTACAGCAG
TACAGCAGTTCATCCCCGCCGCGTCCAGCATACCCGGTATACAAGATCCA
TGGCGCGATTGGCACGTGGCAAGGTCCGCCACGAGCGTTACGAGGAGTGC
CTGATGGCCGTTTCCACCGCTGTTATTTGCGCGCTAGCCGGACATGACGA
TTTGTTCCTGGTCATGGGAGTACTCGCTCTGGTACGGCTGGAAGCGTATG
AAGAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig628:15051..15306-

>mRNA_P-littoralis_Contig628.6.1 ID=mRNA_P-littoralis_Contig628.6.1|Name=mRNA_P-littoralis_Contig628.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig628:15051..15306- (Pylaiella littoralis U1_48)
GGCACAACGCCACAGCACCAGCACAGCACAGCAGCACAGCAGTACAGCAG
TACAGCAGTTCATCCCCGCCGCGTCCAGCATACCCGGTATACAAGATCCA
TGGCGCGATTGGCACGTGGCAAGGTCCGCCACGAGCGTTACGAGGAGTGC
CTGATGGCCGTTTCCACCGCTGTTATTTGCGCGCTAGCCGGACATGACGA
TTTGTTCCTGGTCATGGGAGTACTCGCTCTGGTACGGCTGGAAGCGTATG
AAGAG
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