mRNA_P-littoralis_Contig628.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig628.2.1
Unique NamemRNA_P-littoralis_Contig628.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig628.2.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.570e-9
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 VSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAVKLLVDK 162
             SLS  AR+K+PSLD FMD LD ++GKFPL  L +T FDM FP  AV L VDK
Sbjct:  499 ASLSASAREKLPSLDTFMDNLD-ESGKFPLHGLMMTCFDMMFPDEAVDLFVDK 550
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BLAST of mRNA_P-littoralis_Contig628.2.1 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.150e-8
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 VSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAVKLLVDK 162
             SLS  AR+K+PSLD FMD+LD ++GKFPL    +T FDM FP  A+ L VDK
Sbjct:   97 ASLSASAREKLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVDK 148
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BLAST of mRNA_P-littoralis_Contig628.2.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.240e-8
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 VSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAVKLLVDK 162
             SLS  AR+K+PSLD FMD+LD ++GKFPL    +T FDM FP  A+ L VDK
Sbjct:  388 ASLSASAREKLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVDK 439
[Close]
BLAST of mRNA_P-littoralis_Contig628.2.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.250e-8
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 VSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAVKLLVDK 162
             SLS  AR+K+PSLD FMD+LD ++GKFPL    +T FDM FP  A+ L VDK
Sbjct:  604 ASLSASAREKLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVDK 655
[Close]
BLAST of mRNA_P-littoralis_Contig628.2.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 3.130e-5
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    4 VSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAV 144
             SLS  AR+K+PS+D FMD+LD ++GKFPL  L +   DM FP  AV
Sbjct:  429 ASLSASAREKLPSVDTFMDSLD-ESGKFPLHGLMMMCLDMMFPDEAV 474
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig628.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JJP9_9PHAE3.570e-962.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIE0_9PHAE1.150e-858.49DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNV0_9PHAE1.240e-858.49DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JW40_9PHAE1.250e-858.49HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5K2B4_9PHAE3.130e-555.32DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig628contigP-littoralis_Contig628:6414..6575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.8763506-CDS-P-littoralis_Contig628:6413..65751680791308.8763506-CDS-P-littoralis_Contig628:6413..6575Pylaiella littoralis U1_48CDSP-littoralis_Contig628 6414..6575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig628.2.1prot_P-littoralis_Contig628.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig628 6414..6575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig628.2.1

>prot_P-littoralis_Contig628.2.1 ID=prot_P-littoralis_Contig628.2.1|Name=mRNA_P-littoralis_Contig628.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
EVSLSQKARDKMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNFPVAAVKL
LVDK
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mRNA from alignment at P-littoralis_Contig628:6414..6575-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig628.2.1 ID=mRNA_P-littoralis_Contig628.2.1|Name=mRNA_P-littoralis_Contig628.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig628:6414..6575- (Pylaiella littoralis U1_48)
GAGGTTTCGTTGTCGCAGAAGGCGCGTGACAAGATGCCTTCGCTCGACGA
CTTCATGGATGCCCTTGACCCGGACACCGGCAAGTTTCCGCTGGAAGATC
TGACGCTGACTACATTCGACATGAACTTTCCGGTCGCGGCGGTGAAGCTC
TTGGTAGACAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig628:6414..6575-

>mRNA_P-littoralis_Contig628.2.1 ID=mRNA_P-littoralis_Contig628.2.1|Name=mRNA_P-littoralis_Contig628.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig628:6414..6575- (Pylaiella littoralis U1_48)
GAGGTTTCGTTGTCGCAGAAGGCGCGTGACAAGATGCCTTCGCTCGACGA
CTTCATGGATGCCCTTGACCCGGACACCGGCAAGTTTCCGCTGGAAGATC
TGACGCTGACTACATTCGACATGAACTTTCCGGTCGCGGCGGTGAAGCTC
TTGGTAGACAAG
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