mRNA_P-littoralis_Contig628.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig628.33.1
Unique NamemRNA_P-littoralis_Contig628.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig628.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig628contigP-littoralis_Contig628:161961..164848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LD34
Model size2246
Max annot lvl2880.D8LD34|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.97e-05
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size1518
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.6253319-UTR-P-littoralis_Contig628:161960..1619791680791308.6253319-UTR-P-littoralis_Contig628:161960..161979Pylaiella littoralis U1_48UTRP-littoralis_Contig628 161961..161979 +
1680791308.6624246-UTR-P-littoralis_Contig628:164139..1648481680791308.6624246-UTR-P-littoralis_Contig628:164139..164848Pylaiella littoralis U1_48UTRP-littoralis_Contig628 164140..164848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.6416216-CDS-P-littoralis_Contig628:161979..1634441680791308.6416216-CDS-P-littoralis_Contig628:161979..163444Pylaiella littoralis U1_48CDSP-littoralis_Contig628 161980..163444 +
1680791308.6522176-CDS-P-littoralis_Contig628:164086..1641391680791308.6522176-CDS-P-littoralis_Contig628:164086..164139Pylaiella littoralis U1_48CDSP-littoralis_Contig628 164087..164139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig628.33.1prot_P-littoralis_Contig628.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig628 161980..164139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig628.33.1

>prot_P-littoralis_Contig628.33.1 ID=prot_P-littoralis_Contig628.33.1|Name=mRNA_P-littoralis_Contig628.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=506bp
MVGVVSKKCTHRGCTKGPSYGVAGTTTAEFCSGHAKNGMVDVVSKKCTHL
GCTKQPSYGVVGTTTAEFCSGHAKDGMVDVVSKKCTHLGCTKGPSYSMAG
PTTAEFCFGHAKDGMVDVVSKKCTHLGCTKRPNYGVAGTTTAEFCSGHAK
DGMVNVRSKKCTHRGCTKGPSYGVAGTTTAEFCSGHAKNGMVDVVSKKCT
HLGCTKGPSYGVAGTTRAEFCSGHAKDGMVGVVSKKCTHRGCTKGPSYGV
AGTTTAEFCFGHAKDGMVNVVSKRCTHRGCTKRPMYGVAGTTTAEFCSGH
AKNGMVDVRSKKCTHRGCTKVPSYGVAGGTPAFCARHAEEGMARSSAPKA
ASGINGRSGGTRGCHAGKRKDRSPTPSQTGKFAGTSMADSKRSRQAPYHT
TVTSAPIEAAEDQRGTPVEDSSISESNDAAVKTEVAVSSKTDPRTGLPDE
VATAERAIPVEYGSCVEPKSAVKTEVRIAFPSKNATAGGQPNRREGKSRT
RATRM*
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mRNA from alignment at P-littoralis_Contig628:161961..164848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig628.33.1 ID=mRNA_P-littoralis_Contig628.33.1|Name=mRNA_P-littoralis_Contig628.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2888bp|location=Sequence derived from alignment at P-littoralis_Contig628:161961..164848+ (Pylaiella littoralis U1_48)
TGGACACGCCAAGGACGGCATGGTGGGTGTTGTCAGCAAGAAGTGCACCC
ACCGTGGCTGCACCAAGGGGCCGAGCTATGGCGTGGCAGGTACCACCACG
GCGGAGTTCTGCTCTGGACACGCCAAGAACGGCATGGTGGATGTTGTCAG
CAAGAAGTGCACTCACCTTGGCTGCACCAAGCAGCCGAGCTATGGCGTGG
TAGGTACCACCACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGCATG
GTGGATGTTGTCAGCAAGAAGTGCACCCACCTTGGCTGCACCAAGGGGCC
GAGCTATAGCATGGCAGGTCCCACCACGGCGGAGTTCTGCTTTGGACACG
CCAAGGACGGCATGGTGGATGTTGTCAGCAAGAAGTGCACCCACCTTGGC
TGCACCAAGCGGCCGAACTATGGCGTGGCAGGCACCACCACGGCGGAGTT
CTGCTCTGGACACGCCAAGGACGGCATGGTGAACGTCCGCAGCAAGAAGT
GCACCCACCGTGGCTGCACCAAGGGGCCGAGCTATGGCGTGGCAGGTACC
ACCACGGCGGAGTTCTGCTCTGGACACGCCAAGAACGGCATGGTGGATGT
TGTCAGCAAGAAGTGCACCCACCTTGGCTGCACCAAGGGGCCGAGCTATG
GTGTGGCAGGTACCACCAGGGCGGAGTTCTGCTCTGGACACGCCAAGGAC
GGCATGGTGGGTGTTGTCAGCAAGAAGTGCACCCACCGTGGCTGCACCAA
GGGGCCGAGCTATGGTGTGGCAGGTACCACCACGGCGGAGTTCTGCTTTG
GACACGCCAAGGACGGCATGGTGAACGTTGTCAGCAAGCGGTGTACCCAC
CGCGGCTGCACCAAGAGGCCGATGTATGGTGTGGCAGGTACCACCACGGC
GGAGTTCTGCTCTGGACACGCCAAGAACGGCATGGTGGACGTCCGCAGCA
AGAAGTGCACTCACCGCGGCTGCACCAAGGTGCCGAGCTATGGTGTGGCC
GGCGGTACCCCAGCGTTCTGCGCGCGACACGCTGAAGAAGGCATGGCGCG
TTCCTCCGCCCCCAAGGCAGCATCTGGTATCAACGGTAGAAGTGGCGGAA
CACGGGGTTGTCACGCCGGAAAGAGGAAGGATCGCTCTCCTACACCTTCC
CAGACAGGGAAATTCGCCGGCACGAGCATGGCAGACTCCAAGCGAAGCCG
CCAGGCGCCCTACCACACAACTGTGACTTCGGCCCCTATCGAAGCAGCTG
AAGATCAACGCGGTACCCCAGTTGAAGACAGTTCGATATCGGAGTCAAAC
GACGCTGCGGTGAAGACAGAAGTGGCTGTTTCTTCCAAGACGGACCCGAG
GACAGGTTTACCAGATGAAGTAGCTACAGCGGAACGGGCCATCCCTGTGG
AGTATGGTTCGTGTGTTGAGCCTAAATCTGCGGTGAAGACGGAAGTGAGG
ATCGCATTCCCATCGAAAAACGCAACCGCTGGAGGTGAGTTGTAGAACAT
CCATTACAGCTCTGCGGCAGCCGGGTCCAGCATGCCACCCCGTTTTATCA
AGAACTTTGCGTCACCTGTGTTTTTGTCTTCATGTTGCACAGAATGGACG
ACGGGCAGTTCGTTGCTTTCCCTGTGGTTGTGTCTCGTTGTGTACCGGTG
GCCTCCACAGCTCTGTGTGCACAGCGCATGCGTTGGATCGGTGTATGAGT
GAAGTTTGTAGAAGGCCGACATGCGTGTGTTGCCTAGAATATACCCTAAG
ATGGTGTTCCGAAAGTAGTCCTGCTTACCATTGCATCATGCGGCTAGTCC
ATTGCTTTCTTTGCTGCTTTCTCGCATAGTCCGTTTCCGGTTGCCAATTC
TTCATACTTCGGTGATCATTACCATGAAGCGTATCTCGCGCACCAATCTC
AAGGCTGTCTGTGCTATCTCTTGGTCTGCGGTATTGATGCTGCTAAAACT
CTCTGGCCGTTTTAGTGGTCGAACTACATGCTGGTTTATATCACCGATGT
CCGCATCTACAGCAGCAGTCGTGACGACATTGAAAGCCTTAAGTTAAGGG
CGATCCCACAACTGTTCCTGACGGCCACCGCCGTAGCTTAAACGATCTTG
GTTTTTCGATGCATTCCTTGGAACAGGTCAGCCCAATCGCAGGGAGGGCA
AGAGCCGAACGAGAGCGACGCGAATGTAGCCCGGTTTTGCCCTTGGGAGT
GACGGACACTGCTACGGACACCTTCACTGCTATGGGCGGTGTCTGGCGAT
CGACCGTTCTGGCCGGTTGTCGTGCCAACATCCCATGCTACAGCGGTGCA
GTTTGTCGATTCAGGAAGGTGTCAGTCTTAGGCGTTGAGGTATTGAGTTT
TCGGCTTGCGTTTGTGGCGCCATCAAACGCCGCAGCTGAACTACCTTTGC
TACTATTTGAGCTTGCAGGAAGAGGAATACGTCCGGCACACACACTGTTT
GATTTCCTCTCATTAGCACTTAGTTATTTTGCATGAGAAGTATTGTTTTT
GAAACTTGGGTCTCCATATGGTTAGATACACACGTGCTAGGTTTTGGAGT
GTAACTCAGTTGTTGATTTGGAGGGAGACAAGTCTAGATTGACATTTAGA
CGCCCACGGAGTTGATTTATGCAGCCGACGAAAGGGAAAACGGAGGGAGC
AGGCCGAGTAGCAAGGCATGCACCGGTAAATGATGGGGATCTCAAGAGAG
CAGACCGGGCTGTTTTCGACGGTTGGCCGATCCCTTTCTACTATGACCGC
CCCTTTTTAGTGTTTGCCTGGTCCGTAGATGCCTTGTTTTCGTTTCGTTT
CGTTCTGACCTGGTATTGTGAACCGCGAATGGTATCTGCTTCATGTGTTG
TCATCCCATATTCTCTGGCACACTAGTCTGCACCCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig628:161961..164848+

>mRNA_P-littoralis_Contig628.33.1 ID=mRNA_P-littoralis_Contig628.33.1|Name=mRNA_P-littoralis_Contig628.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1518bp|location=Sequence derived from alignment at P-littoralis_Contig628:161961..164848+ (Pylaiella littoralis U1_48)
ATGGTGGGTGTTGTCAGCAAGAAGTGCACCCACCGTGGCTGCACCAAGGG
GCCGAGCTATGGCGTGGCAGGTACCACCACGGCGGAGTTCTGCTCTGGAC
ACGCCAAGAACGGCATGGTGGATGTTGTCAGCAAGAAGTGCACTCACCTT
GGCTGCACCAAGCAGCCGAGCTATGGCGTGGTAGGTACCACCACGGCGGA
GTTCTGCTCTGGACACGCCAAGGACGGCATGGTGGATGTTGTCAGCAAGA
AGTGCACCCACCTTGGCTGCACCAAGGGGCCGAGCTATAGCATGGCAGGT
CCCACCACGGCGGAGTTCTGCTTTGGACACGCCAAGGACGGCATGGTGGA
TGTTGTCAGCAAGAAGTGCACCCACCTTGGCTGCACCAAGCGGCCGAACT
ATGGCGTGGCAGGCACCACCACGGCGGAGTTCTGCTCTGGACACGCCAAG
GACGGCATGGTGAACGTCCGCAGCAAGAAGTGCACCCACCGTGGCTGCAC
CAAGGGGCCGAGCTATGGCGTGGCAGGTACCACCACGGCGGAGTTCTGCT
CTGGACACGCCAAGAACGGCATGGTGGATGTTGTCAGCAAGAAGTGCACC
CACCTTGGCTGCACCAAGGGGCCGAGCTATGGTGTGGCAGGTACCACCAG
GGCGGAGTTCTGCTCTGGACACGCCAAGGACGGCATGGTGGGTGTTGTCA
GCAAGAAGTGCACCCACCGTGGCTGCACCAAGGGGCCGAGCTATGGTGTG
GCAGGTACCACCACGGCGGAGTTCTGCTTTGGACACGCCAAGGACGGCAT
GGTGAACGTTGTCAGCAAGCGGTGTACCCACCGCGGCTGCACCAAGAGGC
CGATGTATGGTGTGGCAGGTACCACCACGGCGGAGTTCTGCTCTGGACAC
GCCAAGAACGGCATGGTGGACGTCCGCAGCAAGAAGTGCACTCACCGCGG
CTGCACCAAGGTGCCGAGCTATGGTGTGGCCGGCGGTACCCCAGCGTTCT
GCGCGCGACACGCTGAAGAAGGCATGGCGCGTTCCTCCGCCCCCAAGGCA
GCATCTGGTATCAACGGTAGAAGTGGCGGAACACGGGGTTGTCACGCCGG
AAAGAGGAAGGATCGCTCTCCTACACCTTCCCAGACAGGGAAATTCGCCG
GCACGAGCATGGCAGACTCCAAGCGAAGCCGCCAGGCGCCCTACCACACA
ACTGTGACTTCGGCCCCTATCGAAGCAGCTGAAGATCAACGCGGTACCCC
AGTTGAAGACAGTTCGATATCGGAGTCAAACGACGCTGCGGTGAAGACAG
AAGTGGCTGTTTCTTCCAAGACGGACCCGAGGACAGGTTTACCAGATGAA
GTAGCTACAGCGGAACGGGCCATCCCTGTGGAGTATGGTTCGTGTGTTGA
GCCTAAATCTGCGGTGAAGACGGAAGTGAGGATCGCATTCCCATCGAAAA
ACGCAACCGCTGGAGGTCAGCCCAATCGCAGGGAGGGCAAGAGCCGAACG
AGAGCGACGCGAATGTAG
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