mRNA_P-littoralis_Contig628.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig628.29.1
Unique NamemRNA_P-littoralis_Contig628.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig628.29.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 4.100e-32
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 3 
Query:    3 HGVFSHCAGARSRDGKTFKNATVASGDIVGNRCLCWDEKNAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPDKEAAQPCA 326
            H V+  CAGA + DG  +KNAT+A+G+IVG  C C+D +  V  DI  GCTG I+ GE VVKDW DPPLHL C+KR WR  +D  +++KK  +D+GTT +KE++QP A
Sbjct:  114 HAVWKLCAGATTSDGGKYKNATLATGEIVGRPCSCFDPEKNVD-DIKEGCTGDIQEGEYVVKDWTDPPLHLHCAKRLWRAKVDEILREKKILKDIGTTAEKESSQPSA 220
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BLAST of mRNA_P-littoralis_Contig628.29.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 7.360e-32
Identity = 55/108 (50.93%), Postives = 78/108 (72.22%), Query Frame = 3 
Query:    3 HGVFSHCAGARSRDGKTFKNATVASGDIVGNRCLCWDEKNAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPDKEAAQPCA 326
            H  ++ C GA++ DG+ +KNAT+A+GDIVG  C C +  + V +DI  GCTG+I+ G+ VVKDW+DPPLHL C+KR WR  +D  +  K++ +D+GTT  KE+AQP A
Sbjct:  114 HACWTICCGAKTSDGEKYKNATLATGDIVGRACKCSNPASDV-EDITHGCTGEIEEGDYVVKDWIDPPLHLHCAKRLWRAKVDEILTSKQNLKDIGTTAQKESAQPSA 220
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BLAST of mRNA_P-littoralis_Contig628.29.1 vs. uniprot
Match: A0A6H5K6X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X3_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 9.760e-25
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 3 
Query:    3 HGVFSHCAGARSRDGKTFKNAT---VASGDIVGNRCLCWDEKNAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPDKEAAQPCA 326
            H  +  C GA++ DG+ +KNAT   +A+G+IVG  C C D +  V +DI  G TG ++ G  VVK W DPPL L C+KR WR  +D  +  K++ +D+GTT +KE+AQP A
Sbjct:   18 HACWPTCCGAKTSDGEKYKNATFATLATGEIVGRACKCSDPETNV-EDITDGYTGYMEEGAYVVKGWSDPPLPLHCAKRLWRAKVDEILACKQNLKDIGTTAEKESAQPSA 127
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BLAST of mRNA_P-littoralis_Contig628.29.1 vs. uniprot
Match: D7FZU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.690e-21
Identity = 43/102 (42.16%), Postives = 66/102 (64.71%), Query Frame = 3 
Query:    3 HGVFSHCAGARSRDGKTFKNATVASGDIVGNRCLCWDEKNAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPDKE 308
            H V  HC  A++  GK  KNAT  +   +G  C+  DE N ++ D+ TGCTG I  G+LV+KDW DPPLH  C++R W++++   ++ KK  +++GTT ++E
Sbjct:   14 HAVEIHCVLAKTSGGKLLKNATPTTKKRIGKSCVRADENN-IADDLQTGCTGIISEGDLVIKDW-DPPLHFYCARRLWKESVTQTLKAKKIIKEIGTTEEEE 113
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BLAST of mRNA_P-littoralis_Contig628.29.1 vs. uniprot
Match: D7G1C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C6_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.580e-20
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 3 
Query:  108 WDEKNAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVCSKREWRKAIDHHVQQKKDFQDLGTTPDKEAAQPCAAVPAALKDF 353
            +D +   + D+++GCTG I  G+LVVKDW +PPLHL+C+KREWRK +   +++K+  +DL +T  +EAAQP A VPA L  F
Sbjct:   57 YDPEQPAAIDLDSGCTGVIADGDLVVKDWDEPPLHLLCAKREWRKTVISILRKKQQLRDLDSTEKQEAAQPSAEVPANLVFF 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig628.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JLP4_9PHAE4.100e-3253.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ5_9PHAE7.360e-3250.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X3_9PHAE9.760e-2545.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZU8_ECTSI1.690e-2142.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1C6_ECTSI2.580e-2050.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig628contigP-littoralis_Contig628:142297..144346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size647
Hectar predicted targeting categoryother localisation
Exons3
Cds size564
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.5505888-UTR-P-littoralis_Contig628:142296..1423791680791308.5505888-UTR-P-littoralis_Contig628:142296..142379Pylaiella littoralis U1_48UTRP-littoralis_Contig628 142297..142379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.5638318-CDS-P-littoralis_Contig628:142379..1425861680791308.5638318-CDS-P-littoralis_Contig628:142379..142586Pylaiella littoralis U1_48CDSP-littoralis_Contig628 142380..142586 -
1680791308.5753703-CDS-P-littoralis_Contig628:143517..1437821680791308.5753703-CDS-P-littoralis_Contig628:143517..143782Pylaiella littoralis U1_48CDSP-littoralis_Contig628 143518..143782 -
1680791308.5866172-CDS-P-littoralis_Contig628:144254..1443461680791308.5866172-CDS-P-littoralis_Contig628:144254..144346Pylaiella littoralis U1_48CDSP-littoralis_Contig628 144255..144346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig628.29.1prot_P-littoralis_Contig628.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig628 142380..144346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig628.29.1

>prot_P-littoralis_Contig628.29.1 ID=prot_P-littoralis_Contig628.29.1|Name=mRNA_P-littoralis_Contig628.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=188bp
TTASSRTAQEPGAATAKPSRTQPSLAVTSSATGACAGTKRTPSPRTSTLG
APARSRPGSSWSRTGWTPPCTSSAPSASGGRLSTTTFSRRRTSRTSAPHP
TRKRPSPALPSRRLSRTSEGRATSGLCRSVPGTTSLPIDTTTRRAARRLR
GLYFGQHTHRILSDDSLFVGINAVRWELPVTSYSSSA*
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mRNA from alignment at P-littoralis_Contig628:142297..144346-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig628.29.1 ID=mRNA_P-littoralis_Contig628.29.1|Name=mRNA_P-littoralis_Contig628.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2050bp|location=Sequence derived from alignment at P-littoralis_Contig628:142297..144346- (Pylaiella littoralis U1_48)
ACCACGGCGTCTTCTCGCACTGCGCAGGAGCCAGGAGCCGCGACGGCAAA
ACCTTCAAGAACGCAACCGTCGCTAGCGGTGACATCGTCGGCGTAAGTTG
AACGGCTGCATGTCATGTCCGCCATGATGACCGTCGTATATGCTGTTTTT
TGTCATGTGATAAAGAGACCTGCCCCCGTCTGTTTTTCCATTTTCTTTTT
ATATACTGCTTTTACCCCATGTAGTTAAAAAGAAAAAAGAGCCGCCCCCG
TATATTATTCATTTATTTCCCTCACCGTCGTTGGCCGTGACATCATCGGC
GTTAGTTGTACGGTTGCATGTTATCTCCGACATCATGACCGTCGTGCTGT
TTTTTTGTCGCGTGATACAGAAGACCTGCCCCCGTCTATTTTTCCGTTTT
CTTTTTATATGCCGTTTTTATCCCATGTCGTTCGAAAGAGCCGCCCCAGT
CTATTTCTGTTATCATAATTACGTGCGCCGTAACTCTGTACCTCTCTCTT
CCTCCCCCTTCGCCCTTCCCTCCCGCTCTCCCTTTATTTTCCTTCCTCAA
TCCGAAAATAACAGAACAGGTGCCTGTGCTGGGACGAAAAGAACGCCGTC
TCCAAGGACATCAACACTGGGTGCACCGGCAAGATCAAGGCCGGGGAGCT
CGTGGTCAAGGACTGGGTGGACCCCCCCCTGCACCTCGTCTGCTCCAAGC
GCGAGTGGAGGAAGGCTATCGACCACCACGTTCAGCAGAAGAAGGACTTC
CAGGACCTCGGCACCACACCCGACAAGGAAGCGGCCCAGCCCTGCGCTGC
CGTCCCGGCGGCTCTCAAGGACTTCTGAGGTACGATCTGTATCTGATTAT
ACCGGGCTAACGCTCCCCTCAAACATACAACGAAACCTCAAAATAACTTA
ATGGAACTTGATCTATCGAGCAGCGATTCAGAAACTGACGTCATAGTGCC
AAATGACGCTGCAGCTCAGCGTAGAAGCAGGCGCGCAGCTTTAATAGCAG
ATCGACGATCCAGAGGTGAAATTCGAAACATACAACATCAAATCCGCAAC
AATGCATGTCATCGCAGAAGCAGGCGCGCTGCCATTATCGCCGCACGTCG
CGCATCCGGTTAAATTCGCATTCACGCCGCCAACGATACATCACCACCAT
CTCTCCCTCCTTCCCCTAATCCTCCACCGCCTACTTTACCTCCTCCACCA
CCACAACCTGTATGGGCTGTTCAGCATGAGATTGGTGACGGAGCTTGCGG
CTTTCGAGCAATTGCTAGACGTTTCCTCGGTGATCCTGAGTTGCACTTAC
AAGCACGACATCAAATTGTACTGTACCTTGCACACAACAGTCAGGACGAC
AACCTACACATCCACGACGGCATTAACACAGAACTTCTTTACTGTTCAGG
TTCACCGCCCTCTACATACTCCTCTTACGACGACTAACTCTCAAGAATGT
CCATGCCTACCACGTACATGGGCCAACCCGAAATTACTGCTGCCATCGTA
GTCTATGGAACCCCCATAATTCCACACTTCCAAAGTTTAACCTTACCGCA
CCCAGCCACCGCTGATCTCAATGAACGTCACCTCAGGTTCACATCCGCCT
CACGTCATTACGACACCTTCACCCTACCAAACCCTGCCGCTCAATCCTAA
CATGACCCGTTACGATTCAACGGTCCACTATTTCCTGTTCAGGGCGACTC
CACAAGCGCGGAGTCGACTCCTCGCGACACCCTGATGACGGTCTCACGGT
GTGCTGAAAGGGTCGGGCAACTTCGGGGCTGTGTCGTTCTGTACCTGGAA
CTACCTCCTTGCCCATAGATACAACCACCAGGCGTGCCGCACGACGTCTA
CGTGGACTATATTTTGGTCAACACACCCATCGCATTTTGAGCGATGATTC
TTTATTCGTCGGTATCAATGCCGTACGCTGGGAACTTCCGGTTACCTCTT
ACAGTAGTTCTGCCTGAGACGTACCTTTGCCTCGTTACTACTAGGTAACA
TTTCGTTAGAGTATTTCAGTTTCCTTGGCGCCTTCTGTCGCCCAACTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig628:142297..144346-

>mRNA_P-littoralis_Contig628.29.1 ID=mRNA_P-littoralis_Contig628.29.1|Name=mRNA_P-littoralis_Contig628.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig628:142297..144346- (Pylaiella littoralis U1_48)
ACCACGGCGTCTTCTCGCACTGCGCAGGAGCCAGGAGCCGCGACGGCAAA
ACCTTCAAGAACGCAACCGTCGCTAGCGGTGACATCGTCGGCAACAGGTG
CCTGTGCTGGGACGAAAAGAACGCCGTCTCCAAGGACATCAACACTGGGT
GCACCGGCAAGATCAAGGCCGGGGAGCTCGTGGTCAAGGACTGGGTGGAC
CCCCCCCTGCACCTCGTCTGCTCCAAGCGCGAGTGGAGGAAGGCTATCGA
CCACCACGTTCAGCAGAAGAAGGACTTCCAGGACCTCGGCACCACACCCG
ACAAGGAAGCGGCCCAGCCCTGCGCTGCCGTCCCGGCGGCTCTCAAGGAC
TTCTGAGGGTCGGGCAACTTCGGGGCTGTGTCGTTCTGTACCTGGAACTA
CCTCCTTGCCCATAGATACAACCACCAGGCGTGCCGCACGACGTCTACGT
GGACTATATTTTGGTCAACACACCCATCGCATTTTGAGCGATGATTCTTT
ATTCGTCGGTATCAATGCCGTACGCTGGGAACTTCCGGTTACCTCTTACA
GTAGTTCTGCCTGA
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