mRNA_P-littoralis_Contig627.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig627.24.1
Unique NamemRNA_P-littoralis_Contig627.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig627.24.1 vs. uniprot
Match: A0A6H5K6K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.820e-33
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = -1 
Query:    1 NHPHREQMRPNHRSRHSCSAATISPAGHYLSTQYLSTRAREYRSLEPTTTLCGETVYFLLNSD 189
            NHPHREQM+PNHR+RHSCSAATI PAGHYLST YLSTRAREYRSLEPT+TLCGETVYFLLNSD
Sbjct:   32 NHPHREQMQPNHRARHSCSAATIFPAGHYLSTPYLSTRAREYRSLEPTSTLCGETVYFLLNSD 94
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BLAST of mRNA_P-littoralis_Contig627.24.1 vs. uniprot
Match: A0A6H5J8N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8N9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.000e-23
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = -1 
Query:    1 MRPNHRSRHSCSAATISPA-GHYLSTQYLSTRAREYRSLEPTTTLCGETVYFLLNSD 168
            MRPNHRS HSCSAATISPA GHYL+ +YLSTRAREYRSLEP T LCGETVYF LNSD
Sbjct:    1 MRPNHRSGHSCSAATISPAAGHYLNARYLSTRAREYRSLEPITILCGETVYFQLNSD 57
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BLAST of mRNA_P-littoralis_Contig627.24.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.300e-9
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:  226 EEYWLKMVMFLKGNFQFIPDYKDIPNIDSKDIR 324
            EEYWL+MVM LKGN++ IPDYKDIP+IDSKDIR
Sbjct:  543 EEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIR 575
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BLAST of mRNA_P-littoralis_Contig627.24.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.440e-7
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  217 NPKEEYWLKMVMFLKGNFQFIPDYKDIPNIDSKDIR 324
            N  +EYW++MV+FLK NFQ IP Y DIPN+DSK IR
Sbjct:  435 NRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIR 470
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig627.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K6K2_9PHAE1.820e-3392.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8N9_9PHAE1.000e-2385.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB08_9PHAE1.300e-981.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE3.440e-766.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig627contigP-littoralis_Contig627:98424..98747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size325
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.0825746-UTR-P-littoralis_Contig627:98423..986001680791308.0825746-UTR-P-littoralis_Contig627:98423..98600Pylaiella littoralis U1_48UTRP-littoralis_Contig627 98424..98600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.096226-CDS-P-littoralis_Contig627:98600..987471680791308.096226-CDS-P-littoralis_Contig627:98600..98747Pylaiella littoralis U1_48CDSP-littoralis_Contig627 98601..98747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig627.24.1prot_P-littoralis_Contig627.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig627 98601..98747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig627.24.1

>prot_P-littoralis_Contig627.24.1 ID=prot_P-littoralis_Contig627.24.1|Name=mRNA_P-littoralis_Contig627.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=49bp
MRVVLRVRVRVRPNPKEEYWLKMVMFLKGNFQFIPDYKDIPNIDSKDIR
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mRNA from alignment at P-littoralis_Contig627:98424..98747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig627.24.1 ID=mRNA_P-littoralis_Contig627.24.1|Name=mRNA_P-littoralis_Contig627.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig627:98424..98747+ (Pylaiella littoralis U1_48)
GTCACTATTCAGCAGAAAGTAGACAGTCTCGCCGCACAGAGTGGTGGTGG
GCTCCAGGCTCCGATACTCGCGCGCTCGCGTACTCAGGTACTGAGTACTG
AGGTAGTGGCCCGCAGGGGAGATAGTGGCAGCTGAGCATGAGTGACGCGA
GCGGTGGTTCGGCCGCATCTGCTCCCGATGCGGGTGGTTCTTAGGGTTAG
GGTTAGGGTTAGGCCTAACCCTAAAGAAGAGTATTGGCTGAAAATGGTGA
TGTTTCTCAAGGGAAATTTCCAGTTTATTCCCGACTACAAGGACATCCCC
AACATTGACTCTAAGGACATCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig627:98424..98747+

>mRNA_P-littoralis_Contig627.24.1 ID=mRNA_P-littoralis_Contig627.24.1|Name=mRNA_P-littoralis_Contig627.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=147bp|location=Sequence derived from alignment at P-littoralis_Contig627:98424..98747+ (Pylaiella littoralis U1_48)
ATGCGGGTGGTTCTTAGGGTTAGGGTTAGGGTTAGGCCTAACCCTAAAGA
AGAGTATTGGCTGAAAATGGTGATGTTTCTCAAGGGAAATTTCCAGTTTA
TTCCCGACTACAAGGACATCCCCAACATTGACTCTAAGGACATCAGG
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