mRNA_P-littoralis_Contig627.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig627.20.1
Unique NamemRNA_P-littoralis_Contig627.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5L437_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L437_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 5.130e-40
Identity = 68/109 (62.39%), Postives = 87/109 (79.82%), Query Frame = 1
Query:   52 RDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQN 378
            R EV+ LDDAKT  LP   CLA+G P+V++KSPQ V+LGVCNN+DG+V  IEL  RE+ +QN   G+RVVHLKYPPV+V V+I++AD+AGL+LPGLPRGV+    VE+N
Sbjct:   14 RSEVNPLDDAKTKGLPRQLCLAVGIPIVVYKSPQHVLLGVCNNSDGIVRAIELYQREQ-VQNHNDGYRVVHLKYPPVRVFVHIESADDAGLKLPGLPRGVVAFGPVERN 121          
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.320e-38
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query:   13 QVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQ 375
            +VPP  A  P GLR E+ SLDD KTN+LP+ ACLAIGAPVVLHKSPQFV+LGVCNN+DG++ GIEL D  E   +   G+ VV L+Y P+++ VYIK+AD AGL L GL RGVI V+ VE+
Sbjct:   98 EVPPTDAPWPAGLRREIKSLDDGKTNDLPTSACLAIGAPVVLHKSPQFVLLGVCNNSDGIIRGIEL-DPREGYASSTAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVER 217          
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.220e-38
Identity = 72/123 (58.54%), Postives = 96/123 (78.05%), Query Frame = 1
Query:    7 ASQVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQ 375
            A + P   A  PTGLR+E++SLDDAKT +LP+LA LA+GAPVV+HK PQFV+LGVCNN+DG++ GIEL  RE+ L +   G+ VV+L+Y P++V VYIK AD+AGL L GL RGV+ ++ VE+
Sbjct: 2041 AEEKPATNAPWPTGLREEINSLDDAKTKDLPTLAFLAVGAPVVVHKKPQFVLLGVCNNSDGIIRGIELDPREDFLLDPTPGYSVVNLRYAPLRVFVYIKTADDAGLHLEGLDRGVVAIAPVEK 2163          
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.980e-37
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query:   13 QVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQ 375
            +VPP  A  P GLR E+ SLDD KTN+LP+ ACLAIGAPVVLHKSPQFV+LGVCNN+DG++ GIEL D  E   +   G+ VV L+Y P+++ VYIK+AD AGL L GL RGVI V+ VE+
Sbjct: 1805 EVPPTDAPWPAGLRREIKSLDDGKTNDLPTSACLAIGAPVVLHKSPQFVLLGVCNNSDGIIRGIEL-DPREGYASSTAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVER 1924          
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.670e-36
Identity = 70/121 (57.85%), Postives = 93/121 (76.86%), Query Frame = 1
Query:   13 QVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQ 375
            Q P   A  PTGLR+E++SLDDA T +LP+LA LA+GAPVV+HK PQFV+LGVCNN+DG++ GIEL   E+ L +   G+ VV+L+Y P++V VYIK AD+AGL L GL RGV+ ++ VE+
Sbjct:  577 QKPATNAPWPTGLREEINSLDDANTKDLPTLAFLAVGAPVVVHKRPQFVLLGVCNNSDGIIRGIELDPLEDFLLDPTPGYSVVNLRYAPLQVFVYIKTADDAGLHLEGLDRGVVAIAPVEK 697          
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 8.040e-36
Identity = 69/128 (53.91%), Postives = 95/128 (74.22%), Query Frame = 1
Query:   13 QVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQNQRSTSK 396
            + P  GA+ P  LR+EV+SLDD KT +LP   CLA+G P+V+HKSPQ V+LGVC+N DG+V  IEL  RE+ +QN + G+RVVHLK+ PV+V V+I++ D++GL+LPG PRGV+    +E+N   T K
Sbjct: 1292 ETPQAGAAWPPCLRNEVNSLDDTKTKDLPRQLCLAVGVPIVVHKSPQHVLLGVCSNRDGIVRAIELDQREQ-IQNHDGGYRVVHLKHLPVRVFVHIESMDDSGLKLPGFPRGVVAFGPIERNVVLTGK 1418          
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.660e-30
Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   46 GLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQN 378
            GLRDE+SSLDDAKTN+LP+LACLAIGAPVVLHK PQFV+LGVCNN+DG++ GIE+  REE                      VYI+ A +AGL+LP L RGV +V  VE+N
Sbjct: 1700 GLRDEISSLDDAKTNDLPTLACLAIGAPVVLHKQPQFVILGVCNNSDGIIRGIEITQREEVF--------------------VYIQTAYDAGLKLPDLCRGVTSVGPVERN 1790          
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5JCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.760e-27
Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 1
Query:   49 LRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQ 375
            LRDEV+++D+A  ++LP++ACLA+GA VV+HKSPQFV+LGVCNN+DGV+  IEL  REE   +   GH VV+L+Y PV+              L GLPRGV+  + VE+
Sbjct:   26 LRDEVNAIDNASADDLPTVACLAVGAAVVIHKSPQFVLLGVCNNSDGVIDSIELDQREEYHVHSNPGHSVVYLRYTPVR--------------LDGLPRGVVAFAPVEK 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L437_9PHAE5.130e-4062.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2I1_ECTSI1.320e-3861.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIB1_9PHAE4.220e-3858.54ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D7G3U9_ECTSI1.980e-3761.98ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KXW4_9PHAE2.670e-3657.85ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K882_9PHAE8.040e-3653.91ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JN07_9PHAE3.660e-3058.56ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JCW5_9PHAE1.760e-2751.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig627contigP-littoralis_Contig627:93002..93460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3U9
PFAMsHelitron_like_N,PIF1
Model size459
Max annot lvl2759|Eukaryota
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.25e-38
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size459
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.040393-CDS-P-littoralis_Contig627:93001..934601680791308.040393-CDS-P-littoralis_Contig627:93001..93460Pylaiella littoralis U1_48CDSP-littoralis_Contig627 93002..93460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig627.20.1prot_P-littoralis_Contig627.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig627 93002..93460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig627.20.1

>prot_P-littoralis_Contig627.20.1 ID=prot_P-littoralis_Contig627.20.1|Name=mRNA_P-littoralis_Contig627.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
LSASQVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSP
QFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYI
KAADNAGLQLPGLPRGVINVSSVEQNQRSTSKLRMTLVCNFQGFPAASST
FLP
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mRNA from alignment at P-littoralis_Contig627:93002..93460-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig627.20.1 ID=mRNA_P-littoralis_Contig627.20.1|Name=mRNA_P-littoralis_Contig627.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig627:93002..93460- (Pylaiella littoralis U1_48)
CTGTCGGCTTCACAAGTGCCACCTCCTGGCGCCAGTTCGCCCACTGGCTT GCGCGACGAAGTAAGCTCCCTCGACGACGCCAAAACCAACAACCTCCCGA GCTTGGCATGCCTCGCAATCGGAGCGCCGGTTGTCTTGCACAAAAGCCCG CAGTTCGTCGTGCTCGGCGTGTGCAACAACGCCGACGGAGTGGTTTGCGG TATTGAGCTTGGTGACAGAGAGGAAACCCTTCAAAACCAGGAACACGGCC ACCGTGTCGTTCATCTCAAGTACCCACCGGTAAAGGTCCAGGTCTATATC AAAGCTGCAGATAACGCTGGTCTGCAACTTCCGGGGCTTCCCCGCGGCGT CATCAACGTTTCCTCTGTTGAACAGAACCAGAGATCTACATCAAAGCTGC GGATGACGCTGGTCTGCAACTTCCAGGGCTTCCCCGCGGCGTCATCAACG TTTCTCCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig627:93002..93460-

>mRNA_P-littoralis_Contig627.20.1 ID=mRNA_P-littoralis_Contig627.20.1|Name=mRNA_P-littoralis_Contig627.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig627:93002..93460- (Pylaiella littoralis U1_48)
CTGTCGGCTTCACAAGTGCCACCTCCTGGCGCCAGTTCGCCCACTGGCTT
GCGCGACGAAGTAAGCTCCCTCGACGACGCCAAAACCAACAACCTCCCGA
GCTTGGCATGCCTCGCAATCGGAGCGCCGGTTGTCTTGCACAAAAGCCCG
CAGTTCGTCGTGCTCGGCGTGTGCAACAACGCCGACGGAGTGGTTTGCGG
TATTGAGCTTGGTGACAGAGAGGAAACCCTTCAAAACCAGGAACACGGCC
ACCGTGTCGTTCATCTCAAGTACCCACCGGTAAAGGTCCAGGTCTATATC
AAAGCTGCAGATAACGCTGGTCTGCAACTTCCGGGGCTTCCCCGCGGCGT
CATCAACGTTTCCTCTGTTGAACAGAACCAGAGATCTACATCAAAGCTGC
GGATGACGCTGGTCTGCAACTTCCAGGGCTTCCCCGCGGCGTCATCAACG
TTTCTCCCG
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