mRNA_P-littoralis_Contig627.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig627.18.1
Unique NamemRNA_P-littoralis_Contig627.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig627.18.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 8.240e-26
Identity = 89/255 (34.90%), Postives = 127/255 (49.80%), Query Frame = 1 
Query:  220 VEERHPRYQKTAGTSR*SHCSVVALSRATSLDDIHLLFPVSLSDLNRPRSKDVVALIAFLERLQTATLNAIMSDPSEFTPFAISSGPDNNDDDDFQSSSYDCNKNGGGRHGHGATRRTAHLLPQK*QQLLLQLFHRLGPGRFRWTT---------TNQIRHVRRLPPRRTSLARRCAGTRECFCEYI--TP--GRASQMGAVASVFESIAKICPPDVPEPWTNSVHDHRRRVKCTRLMFGLEWRCSNHCQVGSHT 945
            +++R      T GT+       VAL RAT L+ ++LLFPV+L DLN+P  +D++A+I +L RL   TL   + D S FTP + S        D+  + S    +   GRHG GATRR AHL+              LG   +   +          N   +    PP   S+ R+ A  R+   + +  TP  G    MG VA VFE+IA+ CP      W +SV D + RV  TR  FGL+WR +N+C +G+H+
Sbjct:  236 LQQRDASTGSTHGTAMDPAAVYVALFRATILEALNLLFPVTLEDLNQPPDRDILAIINYLHRLDKETLKVFLQDASRFTPASASLDAAT---DEGPTPSRTQRRRTTGRHGPGATRRVAHLIANSNNNCFFNSALALGLAAWDGPSPCPPPVCLHNNLQPNASFFPP---SILRQSAA-RQARHDILHGTPITGAGCDMGNVAGVFEAIARACPRQGSPLWPDSVFDQQARVARTRRDFGLDWRYANNCTIGNHS 483
[Close]
BLAST of mRNA_P-littoralis_Contig627.18.1 vs. uniprot
Match: A0A6H5K6P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.820e-21
Identity = 84/227 (37.00%), Postives = 112/227 (49.34%), Query Frame = 1 
Query:  286 VALSRATSLDDIHLLFPVSLSDLNRPRSKDVVALIAFLERLQTATLNAIMSDPSEFTPFAISSGPDNNDDDDFQSSSYDCNKNGGGRHGHGATRRTAHLLPQK*QQLLLQLFHRLGPGRFRWTTTNQIRHVRRLPPRRTSLARRCAGTRECFCEYITPGRASQMGAVA----SVFESIAKICPPD--VPEP-WTNSVHDHRRRVKCTRLMFGLEWRCSNHCQVGSHT 945
            VALSRATSLD ++LLFPV+L DLN+P  +D++A+I +L RL   TL   + D S FTP + S        D+  + S    +   GRHG GATRR AHL+              L  G   W         ++LPP         AGT         P   S   A+     S+F+  A    PD  V  P W +SV D + RV  TR  FGL+WR +N+C +G+H+
Sbjct:   23 VALSRATSLDALNLLFPVTLEDLNQPPDRDILAIINYLHRLDKETLKVFLQDASRFTPASASLDAAT---DEGPTPSRTQRRRTTGRHGPGATRRVAHLIANSNNNCFFN--SALALGLAAWDG-------QQLPPS-------SAGT---------PAAGSFFSALQLLRDSMFDGSAL---PDHIVGSPLWPDSVFDQQARVARTRRDFGLDWRYANNCTIGNHS 218
[Close]
BLAST of mRNA_P-littoralis_Contig627.18.1 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.180e-16
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 2 
Query: 1223 SETITQGAEYSLVGVSYNLKLELSTADNHFSTQFRCRGRWIKYDCMDGGITTSSDLFDSARHPASVHIVLYLKTALCISTPATY 1474
            S T T G  YSLVG+S  L L      NHF +Q   RGRW K DC+ GGI TSSD F S  H +SVH+++YL++++C++TP  Y
Sbjct:   97 SMTFTMGVTYSLVGISCFLALGGGPNRNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSSVHMLVYLRSSICVATPPPY 180
[Close]
BLAST of mRNA_P-littoralis_Contig627.18.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.550e-12
Identity = 73/219 (33.33%), Postives = 101/219 (46.12%), Query Frame = 1 
Query:  280 SVVALSRATSLDDIHLLFPVSLSDLNRPRSKDVVALIAFLERLQTATLNAIMSDPSEFT--PFAISSGPDNNDDDDFQSSSYDCNKNGGGRHGHGATRRTAHLLPQK*QQLLLQLFHRLGPGRFRWTTTNQIRHVRRLPPRRTSLARRCAGTRECFCEYITPGRASQMGAVASVFESIAK---------ICPPDVPEPWTNSVHDHRRRVKCTRLMFGL 903
            S +ALSRAT L+D++LLFPV+L DL+RPR+KDVVALI FL RL+  T      D S FT    ++SS  D  D +D  S+      +  GRH   +T   A L+  K     L     L    F   +          PP            R+C     TP  A+   A+  + +++             P ++P PWTN+V++ RR V  TR    L
Sbjct: 1860 SYLALSRATYLEDLYLLFPVTLEDLSRPRNKDVVALIEFLHRLEETTSLLSHPDRSTFTLTSASLSSDGDAIDGEDNTSTGRTRGGSRPGRHLPASTPSIARLIANKNNNYFLNSAMALTLAAFDGLS----------PP----------DGRDC-----TPAGAAFFPAIKLIQDTMFNGESLQQDTLTLPGNIPSPWTNNVNEQRRLVLATRSAEAL 2053
[Close]
BLAST of mRNA_P-littoralis_Contig627.18.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.310e-12
Identity = 56/108 (51.85%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:  286 VALSRATSLDDIHLLFPVSLSDLNRPRSKDVVALIAFLERLQTATLNAIMSDPSEFTPFAISSGPDNNDDDDFQSSSYDCNKNGGGRHGH---GATRRT----AHLLP 588
            VA SRA SL+D +LLFPV+L+DL+RPR  DVVALI  L RL   TLNA  SDPS F P A S   D         S YD  +N GGR      GA+RR     AHL+P
Sbjct: 1461 VARSRAKSLNDTYLLFPVTLNDLSRPRDADVVALIDCLRRLAKDTLNAFTSDPSTFIPSATSLPTD---------SDYDSGENDGGRGSGWLGGASRRRQLQPAHLMP 1559
[Close]
BLAST of mRNA_P-littoralis_Contig627.18.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.890e-12
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:  286 VALSRATSLDDIHLLFPVSLSDLNRPRSKDVVALIAFLERLQTATLNAIMSDPSEFTP-FAISSGPDNNDDDDFQSSSYDCNKNGG--GRHGHGATRRTAHLLPQK 594
            VALSRAT L D++LLFPV+L DLN+P++ D+VA++ +L RL   T+   + DP  FTP +A   G +       ++     +K     GRHG GATRR AHL+P +
Sbjct:  276 VALSRATGLGDLNLLFPVTLQDLNQPQNPDIVAIVNYLHRLDETTMVLFLKDPGSFTPAYATLDGIE-------EAGPRPPHKQPKRVGRHGPGATRRVAHLIPNE 374
[Close]
BLAST of mRNA_P-littoralis_Contig627.18.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.380e-11
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:  286 VALSRATSLDDIHLLFPVSLSDLNRPRSKDVVALIAFLERLQTATLNAIMSDPSEFTP-FAISSGPDNNDDDDFQSSSYDCNKNGG--GRHGHGATRRTAHLLPQK 594
            VALSRAT L D++LLFPV+L DLN+P++ D+VA++ +L RL   T+   + DP  FTP +A   G +       ++     +K     GRHG GATRR AHL+P +
Sbjct: 1983 VALSRATGLGDLNLLFPVTLQDLNQPQNPDIVAIVNYLHRLDETTMVLFLKDPGSFTPAYATLDGIE-------EAGPRPPHKQPKRVGRHGPGATRRVAHLIPNE 2081
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig627.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KPV6_9PHAE8.240e-2634.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6P6_9PHAE1.820e-2137.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDI5_9PHAE2.180e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN07_9PHAE1.550e-1233.33ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K882_9PHAE3.310e-1251.85ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D7G2I1_ECTSI4.890e-1244.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3U9_ECTSI1.380e-1144.34ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig627contigP-littoralis_Contig627:90268..92765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2274
Hectar predicted targeting categoryother localisation
Exons3
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791307.9537928-UTR-P-littoralis_Contig627:90267..917541680791307.9537928-UTR-P-littoralis_Contig627:90267..91754Pylaiella littoralis U1_48UTRP-littoralis_Contig627 90268..91754 -
1680791308.001103-UTR-P-littoralis_Contig627:92272..927651680791308.001103-UTR-P-littoralis_Contig627:92272..92765Pylaiella littoralis U1_48UTRP-littoralis_Contig627 92273..92765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791307.9658196-CDS-P-littoralis_Contig627:91754..918321680791307.9658196-CDS-P-littoralis_Contig627:91754..91832Pylaiella littoralis U1_48CDSP-littoralis_Contig627 91755..91832 -
1680791307.9766681-CDS-P-littoralis_Contig627:91999..920521680791307.9766681-CDS-P-littoralis_Contig627:91999..92052Pylaiella littoralis U1_48CDSP-littoralis_Contig627 92000..92052 -
1680791307.9904158-CDS-P-littoralis_Contig627:92109..922721680791307.9904158-CDS-P-littoralis_Contig627:92109..92272Pylaiella littoralis U1_48CDSP-littoralis_Contig627 92110..92272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig627.18.1prot_P-littoralis_Contig627.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig627 91755..92272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig627.18.1

>prot_P-littoralis_Contig627.18.1 ID=prot_P-littoralis_Contig627.18.1|Name=mRNA_P-littoralis_Contig627.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
MTTSSHHHTTATKTAVDVTDMEQHDGPPISCPKSDNNCFFNSSIALGLAA
FDGRQLIKYVMFDGSHLAERLLLAAVQARESVFASTSHLAVLHKWVL*
back to top

mRNA from alignment at P-littoralis_Contig627:90268..92765-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig627.18.1 ID=mRNA_P-littoralis_Contig627.18.1|Name=mRNA_P-littoralis_Contig627.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2498bp|location=Sequence derived from alignment at P-littoralis_Contig627:90268..92765- (Pylaiella littoralis U1_48)
ATACGAAGTAGTTGATTTCGACGTCACCCTTACATCACCTCTGACAGGTC
CTATTCATGTTACAACAATTTTGAGGTTCACATTCATCCACCTTTTTTAC
CAGCTTCATCCTCAAATTATCTTCTCATCAACATCTCCTCGCACATGTAT
CCCGCTACCCGTGTAAAATCATCGTGTCTCCGTCCTTTTGCGCCCTCGCT
AAAACCGCCGCCCTATTCTGTTGAGGAGCGTCATCCTCGATATCAGAAAA
CCGCCGGGACCTCCCGTTGATCACACTGCAGCGTAGTAGCGCTTTCGCGT
GCAACCTCGCTCGACGATATCCACCTGCTCTTCCCGGTATCGCTGTCCGA
CCTCAACCGGCCTCGCAGTAAGGATGTCGTCGCCCTGATCGCTTTTCTCG
AACGCCTCCAGACCGCCACCCTGAATGCCATAATGTCGGACCCTTCGGAG
TTCACACCGTTTGCGATCTCTTCGGGACCCGACAACAACGACGATGACGA
CTTCCAGTCATCATCATACGACTGCAACAAAAACGGCGGTGGACGTCACG
GACATGGAGCAACACGACGGACCGCCCATCTCTTGCCCCAAAAGTGACAA
CAACTGCTTCTTCAACTCTTCCATCGCCTTGGGCCTGGCCGCTTTCGATG
GACGACCTCTGCCAGATACATCTAGAATGACACCCGCCGGGGCATCTTTC
ATATCGACGCTTCAACTAATCAAATACGTCATGTTCGACGGCTCCCACCT
CGCAGAACGTCTCTTGGTGAGTTTGCATTTCGTTTGCCTCTTGCATCTAG
TTCATGTTTGGCAACCATGGGTGTTCGTATTAGTGCATATCCAGCTATTG
TATCCTAATGATTTCGACTGTCTTCTCTCATACTTCCTCGCCTTCCCTGC
AATTTTCCTTCCCTCTTATCATCCCTGCTGTAGCTCGCCGCTGTGCAGGC
ACGAGAGAGTGTTTTTGCGAGTACATCACACCTGGCCGTGCTTCACAAAT
GGGTGCTGTAGCCTCCGTTTTCGAGTCGATAGCGAAGATCTGCCCACCCG
ACGTACCGGAGCCTTGGACGAATAGCGTTCATGATCATCGCCGCCGAGTG
AAGTGCACCCGCCTTATGTTCGGCCTTGAGTGGAGGTGCAGCAACCACTG
CCAGGTTGGAAGTCACACCCCGCCAAATTACCCCCGACCACTCCCCTAGG
CTACATGACGCCACCCATCATAACCATGCCACCAAGTGGCGCCTCGTCCG
TACAGGGAATGGTTACAGCCTTCTTCCGAAATACCTTTCGACAGGTCAAT
TCTCGGACACGCTCAATGCCCTTATGTGTGACCGGCAGCATATGCGATTG
GAATTTGATCTCCTGGAACCAAGACATGGCCGTAGACCGACTGATGTTCA
GGGCTGACGGTGTTTTCCGGTAACCCCTGGAGTCGTACCTACTATTTCCG
AGACCATTACCCAGGGTGCGGAATATTCCCTCGTTGGAGTCTCGTATAAT
TTAAAACTGGAACTATCAACGGCGGACAACCACTTTTCCACGCAGTTTCG
ATGCAGAGGGCGTTGGATCAAGTACGATTGCATGGACGGCGGCATCACAA
CTTCATCCGACCTGTTCGACTCGGCCCGGCATCCGGCTTCGGTCCACATC
GTGCTCTACCTCAAGACAGCGTTGTGCATCTCGACACCTGCAACCTACGA
ATGGCCCTGTGCCTGAAGCTGCTACCAATCCCCCCGACGGCACACACGAC
AAGTTTGGCACCATCAACTCTTTGAACCCTTTTCCCCCAAAACCAGTTGT
TCGGAAACTGGTTTGCCGCAAGCGAACCCTGCCCCATCAGCCCTTCCGGG
CGGACGGTTTCGAAAGAACGTGTTTGCGTGTCTTTTGAACCCTCGTAGCA
AAGAGGAATGGCATCGATAACTGTTGAGGATCGCCCCCTCTTTGCTACCA
AATAAATACGCTAACAGTGAGAATCAACCCCCTGTGCGTGCATTACGAAC
AGAAAGGCCAATCGTGAAGGAGTGGTAAAAGATGAGGCAGAGTGTCGGAG
AAAGACAACAATTGCATATAGAGAGATAATGACGATGGAGACCGGTTTTG
TATCTTGTAATATAGTGTGTTTGCGTGTCTCTTGATCGCTCGTAGTAGGG
AGGACTGACATGGATAGTTGTTGAGGATGGTGACGAGAATGACGTCATGT
TTCTTGCGCTAAGGTGCTACGAAGTAAAAACGCTGATCAGGTTTGCCCCC
TCTGCGCGTAGATGAATACAAAGGCTCGTGGTGAAGGAGTAGTAAGGAGA
CAGACAAGAATCGCATAGATAGATGATGACGATGGGGGCCGGTATTGTAT
CTTGTACCTTCCCAATGTTCCGCTCTGGTACCGCCAATTATGAGCCCTTG
TAAACATCGCCCCCTTTGCCGTTTCGTTCCTTGCATCATTTGGTTTTGCA
ACCAACAGCATGTTGGGTATAGATGTCCTAATCTTGCGCAGATTTGTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig627:90268..92765-

>mRNA_P-littoralis_Contig627.18.1 ID=mRNA_P-littoralis_Contig627.18.1|Name=mRNA_P-littoralis_Contig627.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig627:90268..92765- (Pylaiella littoralis U1_48)
ATGACGACTTCCAGTCATCATCATACGACTGCAACAAAAACGGCGGTGGA
CGTCACGGACATGGAGCAACACGACGGACCGCCCATCTCTTGCCCCAAAA
GTGACAACAACTGCTTCTTCAACTCTTCCATCGCCTTGGGCCTGGCCGCT
TTCGATGGACGACAACTAATCAAATACGTCATGTTCGACGGCTCCCACCT
CGCAGAACGTCTCTTGCTCGCCGCTGTGCAGGCACGAGAGAGTGTTTTTG
CGAGTACATCACACCTGGCCGTGCTTCACAAATGGGTGCTGTAG
back to top