mRNA_P-littoralis_Contig627.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig627.10.1
Unique NamemRNA_P-littoralis_Contig627.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig627.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig627contigP-littoralis_Contig627:50050..52833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008603958.1
PFAMsWW
Model size1138
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue6.4e-06
EggNOG OGs2D0S7@1|root,2SF74@2759|Eukaryota
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_003860.1
DescriptionShort calmodulin-binding motif containing conserved Ile and Gln residues.
Cds size738
COG categoryA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig627.10.1prot_P-littoralis_Contig627.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig627 50251..52634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791307.6818936-UTR-P-littoralis_Contig627:50049..502501680791307.6818936-UTR-P-littoralis_Contig627:50049..50250Pylaiella littoralis U1_48UTRP-littoralis_Contig627 50050..50250 -
1680791307.7645183-UTR-P-littoralis_Contig627:52634..528331680791307.7645183-UTR-P-littoralis_Contig627:52634..52833Pylaiella littoralis U1_48UTRP-littoralis_Contig627 52635..52833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791307.6932027-CDS-P-littoralis_Contig627:50250..503671680791307.6932027-CDS-P-littoralis_Contig627:50250..50367Pylaiella littoralis U1_48CDSP-littoralis_Contig627 50251..50367 -
1680791307.7114637-CDS-P-littoralis_Contig627:50638..506811680791307.7114637-CDS-P-littoralis_Contig627:50638..50681Pylaiella littoralis U1_48CDSP-littoralis_Contig627 50639..50681 -
1680791307.7271068-CDS-P-littoralis_Contig627:51056..511151680791307.7271068-CDS-P-littoralis_Contig627:51056..51115Pylaiella littoralis U1_48CDSP-littoralis_Contig627 51057..51115 -
1680791307.7379405-CDS-P-littoralis_Contig627:51349..516311680791307.7379405-CDS-P-littoralis_Contig627:51349..51631Pylaiella littoralis U1_48CDSP-littoralis_Contig627 51350..51631 -
1680791307.7532282-CDS-P-littoralis_Contig627:52397..526341680791307.7532282-CDS-P-littoralis_Contig627:52397..52634Pylaiella littoralis U1_48CDSP-littoralis_Contig627 52398..52634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig627.10.1

>prot_P-littoralis_Contig627.10.1 ID=prot_P-littoralis_Contig627.10.1|Name=mRNA_P-littoralis_Contig627.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
MERACVNARCFEAMVQALMEPAKEVQDSQTSVDERHHAQQQWELLKFEDG
VHQQHMSLSDADPSGFYTSSAFFAKTPARSLRASCVRCGDLEAATRCFSC
SRFQGTGRGKYCKDCFEACHPFYRVRHKWVRLEDVDQQNYRASLERNIAD
IQGLLHSASNWGIELYTQDADTTGGDAIKEVARLDEALSIKIRDLKDLTC
EDEDRTKVSAIAARSMEAFARKFQKRYEESEIADAEAGGIGGKAQ*
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mRNA from alignment at P-littoralis_Contig627:50050..52833-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig627.10.1 ID=mRNA_P-littoralis_Contig627.10.1|Name=mRNA_P-littoralis_Contig627.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2784bp|location=Sequence derived from alignment at P-littoralis_Contig627:50050..52833- (Pylaiella littoralis U1_48)
TTTCGTCGCTGCTTTGTAGACGAAATCACGCCGCGTATCACGTCTTCCTT
CCCCCGGACACCGGACACTCCCCCTGCTTGTCTCTCAGCCATCGTGAGGG
GCGCTGCAGGTGCGTACTAGACCAGTGGCGGAAGACGTACGCAAAGCGAT
GCCAGCAGCAGAGCGTTCTCCTGAGGGTTTATGAGGCATTTTCTATCTGA
TGGAAAGAGCATGTGTAAATGCCCGATGTTTCGAGGCGATGGTTCAAGCG
TTGATGGAGCCAGCGAAGGAAGTTCAAGACTCTCAGACAAGCGTGGATGA
GAGGCATCATGCACAACAGCAGTGGGAGCTACTTAAATTCGAAGACGGAG
TGCACCAACAACACATGTCATTGTCGGATGCCGACCCCTCTGGTTTCTAT
ACCAGTTCAGCATTCTTCGCCAAGACCCCCGCAAGGGTGTGTTGCGTGTG
CATGACTTGCAATCCCATTTGCTGGAGGCTAGTCTGCACTGGTCGGATTC
TGCTGTGATTTAGGGAGGTGTTTCGGATCTTTCTGAATATCCATGCTATG
GCATTAGACTATACTCGGAGGATCTATTTAAATAACCTGTTTTGAGAGTA
CTATCGCTGTACTTAGTAAATTGCGAACATCATACTTGTATACGAAAAAA
TACTACCAGTAACTTTTTGGTTTCATTTTTATTCGGCGCATCAGCCGGCG
GTCACACAGGAGGAAGGTCAACATAATTTTATTTGGTACTCTTCCTTCTG
CGGTGCTTTCCTTAATTTCTATCGCGACAAGGGTCCAGCCGTCCCTTTCC
CTAGTCAACCATGGAGTCAGGTCTCTGTACTGTTTACGTACCCGCGAAGT
ACTTTTCGTATTCATTTCGCCAGGCATGGTGTGGTGAGAAAGAAAACAGT
TCACTGAGAATCGAACGCACACAGCTCCGTGTCAGAAGATATCGAGGATA
CCCACCACGGCTGTTCGGCATAATTCATACTCGGAGTATAAGAAAATATC
CAGATTGTGTGACATGACCAGGCAAGATTTGAACTGGCGTCCCTGCCGTC
ACATGGTTTCGATGTTACCAACCGCTGTATCCATCCGTGGATGAAACAGG
TTGCGCCAACAGCGATGTTGTTACAAGAATTTAGGGATCCCCGTATTTTT
TACGTAGCCTCTCTCGAATCTGATCCCCTCTTGCTTCGCTTTCTGCTTGC
AGTCCTTGCGCGCTAGTTGTGTACGATGCGGCGATTTAGAAGCGGCCACA
CGCTGCTTCAGCTGTTCAAGATTCCAAGGGACCGGGCGGGGAAAGTATTG
CAAGGATTGCTTCGAAGCATGCCACCCGTTTTACAGGGTGAGACACAAAT
GGGTGCGGTTAGAGGATGTGGATCAACAAAATTACAGAGCGAGCCTGGAA
AGGAACATTGCCGATATCCAAGGGTTGCTTCATAGTGCTTCGAACTGGGG
GATCGAGCTTTACACCCAGGATGCCGACACGACGGTGAGATGCTGAACGG
TTCTGCCTTTCCTGCAACTCTTCACGGCCCCACGCATAAAACTTCTTGGT
CTACTCCTCTGTCTGTGAGCAAGAGTTTGTAGCTGATCGCAGCACGATGA
CCAACATATTTTCTTTGTGTGCGCTCCTGCAACATTGCACCATTTGTACT
TTCCTCCCTTTCTGTAGGTATGATCCTCTTCTCGCCCCACCCCCTCCCCC
GTCCCCCGTCTCTTTCAGGGTGGCGATGCTATCAAAGAAGTGGCCCGGCT
AGATGAGGCTCTCTCTATCAAAATCAGGTACAGGAGAGAAAAAACATAAC
CTGGTACTGTTATTTGGGCAACAAATTCACCACGAGCATTGCCGGCCTGT
TGATAGGACGGAAAAACTCTACGAGAGTTCAGAGTGGTTGCAGGTATTTT
TCCACCTGCCATCTTCACGCGAACTTCTTCGGGAAACGTCCTTCTTGCAC
TTTCTCGTAAAAGGAGACACGTGACGAGAAACGAACTCCCGGCGATTGCG
ACTTAGCCGCTACTTCGAAGTAGATCACTCCGTCACTGAGGAAAATCATC
CGGTCCGTAACAGTGAAAACTCTACAGCAGTCTTTGAGTGTTCAATGTTT
GCAATGCCGGCCTTCATCTCACTTCACCAATGCGCTCCTTTCTTCGTCAC
AGAGACCTGAAGGACTTGACTTGCGAAGACGAAGATCGCACAAAGGTGGG
TTGTGGTTTTTTTTCTTCGTGCATTTTGAATATCCCGCTGCTTGCGACCT
TTGGCTCCATCTCGAGGAAAAGGTCAGGAAATGGATGGTACGTAGTACTG
AATTGCAGAGGATATCATTATGGGGATGTCAGGCATACCATTTGCCTGCC
TGCATACGCGTACTTGCTAGAGCCACGGCTTAGCTTCATATCAAGAAGAG
TCAACATGATTCCGACTACATTAGCGCTACCGGTGCCCCCCGTTTTTGAT
ATAATTTCTTCCTCAGGTGTCTGCGATTGCAGCGAGATCGATGGAGGCGT
TTGCGCGAAAGTTTCAGAAAAGATACGAAGAGAGCGAGATTGCCGATGCA
GAGGCGGGTGGTATTGGGGGAAAGGCGCAGTAGTATTGCCTTGAAGCACC
ACCTACCCAACTGGGGTGTGGTGAACGGTTGCAGGGTGAGTTTTCGCTAG
CGTGCTTACAATGTACTTCCGGACCCAAGAATTTTCATTCATCGCACTTT
GGATATATTTCTCTTTGCCAACCATTGAGAGCTCTAAGAATCAAGACCGA
ACATCTTACGAACTACTCAGGATAATCATTGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig627:50050..52833-

>mRNA_P-littoralis_Contig627.10.1 ID=mRNA_P-littoralis_Contig627.10.1|Name=mRNA_P-littoralis_Contig627.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=738bp|location=Sequence derived from alignment at P-littoralis_Contig627:50050..52833- (Pylaiella littoralis U1_48)
ATGGAAAGAGCATGTGTAAATGCCCGATGTTTCGAGGCGATGGTTCAAGC
GTTGATGGAGCCAGCGAAGGAAGTTCAAGACTCTCAGACAAGCGTGGATG
AGAGGCATCATGCACAACAGCAGTGGGAGCTACTTAAATTCGAAGACGGA
GTGCACCAACAACACATGTCATTGTCGGATGCCGACCCCTCTGGTTTCTA
TACCAGTTCAGCATTCTTCGCCAAGACCCCCGCAAGGTCCTTGCGCGCTA
GTTGTGTACGATGCGGCGATTTAGAAGCGGCCACACGCTGCTTCAGCTGT
TCAAGATTCCAAGGGACCGGGCGGGGAAAGTATTGCAAGGATTGCTTCGA
AGCATGCCACCCGTTTTACAGGGTGAGACACAAATGGGTGCGGTTAGAGG
ATGTGGATCAACAAAATTACAGAGCGAGCCTGGAAAGGAACATTGCCGAT
ATCCAAGGGTTGCTTCATAGTGCTTCGAACTGGGGGATCGAGCTTTACAC
CCAGGATGCCGACACGACGGGTGGCGATGCTATCAAAGAAGTGGCCCGGC
TAGATGAGGCTCTCTCTATCAAAATCAGAGACCTGAAGGACTTGACTTGC
GAAGACGAAGATCGCACAAAGGTGTCTGCGATTGCAGCGAGATCGATGGA
GGCGTTTGCGCGAAAGTTTCAGAAAAGATACGAAGAGAGCGAGATTGCCG
ATGCAGAGGCGGGTGGTATTGGGGGAAAGGCGCAGTAG
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