mRNA_P-littoralis_Contig626.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig626.11.1
Unique NamemRNA_P-littoralis_Contig626.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig626.11.1 vs. uniprot
Match: D7G2T1_ECTSI (Putative transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T1_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.760e-20
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = 2 
Query:    2 RAMACTIPLMSCLGNLLGVTTQAAFVETLILVYVGGKTGLGTAVTGVLLILSIVLRPLLPILTPGHVSGALTVIISLRLAVFLR 253
            R+MAC IP MS +GN +GVTTQAAFV+++ILV+ GGKTGL   VTG LL+++ V+ PLLP+L P HVSGALTV+ISLR    ++
Sbjct:  274 RSMACAIPCMSLVGNFMGVTTQAAFVQSMILVFAGGKTGLSAVVTGALLLMTTVMWPLLPLLAPAHVSGALTVVISLRFFTVIK 357
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig626.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2T1_ECTSI1.760e-2061.90Putative transporter n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig626contigP-littoralis_Contig626:70667..74200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1604
Hectar predicted targeting categorysignal peptide
Exons4
Cds size690
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig626.11.1prot_P-littoralis_Contig626.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig626 71269..72586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791306.9629285-UTR-P-littoralis_Contig626:70666..712681680791306.9629285-UTR-P-littoralis_Contig626:70666..71268Pylaiella littoralis U1_48UTRP-littoralis_Contig626 70667..71268 -
1680791307.002998-UTR-P-littoralis_Contig626:72586..726641680791307.002998-UTR-P-littoralis_Contig626:72586..72664Pylaiella littoralis U1_48UTRP-littoralis_Contig626 72587..72664 -
1680791307.0123749-UTR-P-littoralis_Contig626:73326..734231680791307.0123749-UTR-P-littoralis_Contig626:73326..73423Pylaiella littoralis U1_48UTRP-littoralis_Contig626 73327..73423 -
1680791307.0273416-UTR-P-littoralis_Contig626:74063..742001680791307.0273416-UTR-P-littoralis_Contig626:74063..74200Pylaiella littoralis U1_48UTRP-littoralis_Contig626 74064..74200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791306.9770172-CDS-P-littoralis_Contig626:71268..719511680791306.9770172-CDS-P-littoralis_Contig626:71268..71951Pylaiella littoralis U1_48CDSP-littoralis_Contig626 71269..71951 -
1680791306.9884303-CDS-P-littoralis_Contig626:72579..725861680791306.9884303-CDS-P-littoralis_Contig626:72579..72586Pylaiella littoralis U1_48CDSP-littoralis_Contig626 72580..72586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig626.11.1

>prot_P-littoralis_Contig626.11.1 ID=prot_P-littoralis_Contig626.11.1|Name=mRNA_P-littoralis_Contig626.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=230bp
MFGMSILLIPFSFDFVDAVCLAAVLGFLCQAVGVLAALLWGAWCGTRNKV
AVSSPEVECETQSGATFGYRHVDGELQRSTGTHSTSVDNQESIVKEGALR
SQLAAPRNISHTVNLNSAPASPTPMRRQSAPTSPFHKYETLRHGHERAVP
SKMQPLDPNKLGLFMRLQAWFSTHNHSSTAPAEKSMQTAEAAPAAPPADP
VAVHWALALVATLELVLSAISDRNQDDEE*
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mRNA from alignment at P-littoralis_Contig626:70667..74200-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig626.11.1 ID=mRNA_P-littoralis_Contig626.11.1|Name=mRNA_P-littoralis_Contig626.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3534bp|location=Sequence derived from alignment at P-littoralis_Contig626:70667..74200- (Pylaiella littoralis U1_48)
CCGTGCTATGGCCTGCACCATACCGTTGATGTCCTGCCTCGGGAATCTGT
TGGGCGTCACCACCCAGGCAGCATTCGTTGAAACTCTGATCCTCGTATAT
GTCGGAGGCAAAACTGGTTTAGGCACAGCCGTTACAGGTGCGTGCACGAG
CATGCTGCCGTATACTGTGCGTCCAAATCACTGCTTACTTCGTTCGTAAA
ATATCTTTCGATGTCTTGTAGTGTCGATGAATTCAACACCGCGTAGAAAA
CGTTTATCCTGCGTCCCGGAATAGAAAAATCGGCTATAAACTCCAACGTC
TCGAACATTTACCCCAGTTGATATACTATCATTAGTGACTACCCCGCGTT
TGGTACCTCCTGAAGTTCGCGTCTGGGCAGCCGATCGTGAACACTCGAAT
TCGACTGCATGAAATGGATGGATTTAGCCGCCCAGTTCCTTCAGAGACCT
CGCTGAGTCCAAGTTTTGTTGACCTAAATTTCAGCAGGACCTCACGTATG
TTGGTGCGCGAGCATAGACAAGCGGTGGTCGTCGAGGCTGTCTTGTTGTT
AGTTGTGATACTGGTCAAGACGGCGAGATACAGTGATAGCCCCTTCAGGC
TTGACTCCTCCTGCGCATCACCACAATATGTCGCGTATTACATCGTCTCG
CGACAAGGATCATATCTCAGACGCTTGATCAACGCTACGCGTTCAAGTGC
TCGTCTTCAAAAGTGTAATCAGAGGGCTGGCCAGACCCACTAAGAGTAGA
TTATGTTTGCTTGTTGCTTGCTGCTAGGGGTTTTGCTCATCCTGAGCATC
GTTTTACGTCCACTGCTTCCCATACTTACTCCGGGGCACGTCTCGGGAGC
TCTGACGGTCATCATCAGCTTGAGGTGCGCTTCGACTCGCAAACGGCTTG
CGTCAAATCCTAGGAGTATGTACTTTACGTCGGCTGAGACACAATGATAG
TTGTGGAGAAGAAAAATCCCTACTTCGTAATAAAGAAACAATCTACATCG
CGCGCGCGCACGCGTGTGTGTGGACTTCCCAGCAAATCAGCGCCGACGTC
ACAACGGTAATAGCTCTGTTGATAGCAAATAGCAGCAATCTGAGATCACC
GGTAGCGCATGGTTGTCATCGTATCTGAACAACGCGCTATGATCAATACA
GCAACAGCAGCGGCTACGGATTCATTACGCTCATGTCTGTCAAGATTTAA
CGCATATTGTGCTTCAGGCGCTCGGTACGGAATCCTGGAAAGTATCACGA
ACGTTCAGCGTGGAGCAAAGTCGAGTCCCAGAAAGTATGCAAGTTCATCG
TTTGATCCCCTTCCTTCGATATTTTTGGGGGCTTACAAATTTTACTTTAG
TTGCGCATCCCGGCCCCTAATACTTTCTCCCAAGTTCTCGATCCAATACG
ACGTGGTGAGCGTCACTGATACGGCTTCCATTTGGTAGGGGATCTCCGTT
TATGAACGACGGGAAAAGTTACCAGCCTGCGACGGGTGTAGGCCTACTCT
CATCTGTCCCCGCCCCCCATTTGCTGGTAACCTAAGGCTTGCTGTGTTTC
TACGGGAACCAGGTATTTCACCGTCATACGGAGGGTCGATATCACGCTCC
CGAGCAACCTTCTGATGTTTGGTGAGTTGGTGCCACGTATTCACTCACAT
ACTTGTAGTCGGTTGGGCCTCACCACGTCTCGGGATTTAATTCAATGCTT
GAAGATAAGATATAGAAAACGAAGAGACAATTGAGCTTCGAACGCCTACG
AAATATTTCCGGAGTGGTTGGGCTGACGAGGACTAATCCTGGTGTTAGTC
TAGACAGGACAAACAAACGTCATGATAGCCGTACGATCTACCCCATTTGG
AGTTGGCTACGAGGTACAAGTTGGGAAGGCCAGTAATAAGATCGCCTGGT
GTTGAACATGTAACGGTTACACGTGCGCACGGCATGAGTGTTGCTTGGTC
CCCCCTTTCATGTTGAGGAGATCGGGAGCAAAGGGTGTAGTACTCGGGTT
CGGTCGAACTGCTCTCAGGCACCCAGCACAACAAGGGTCGTTGCCCTCTT
CACGTTCAGACGATTGTTGTTCGCAAGATACCGCAGTCCAGCAGTACTAA
AGTGAGAACGCACCGATTGGCACAAGACAATATAACCAGAACTTAAACCC
TCGCTGAAACGCTTGGAGGTTAAAGTCGCAGTTTTTTTTGTCCTCAACAA
CCTCTCACGCCATACTCCGTCCACGGCTACTGTTTTGAACCCCCTCCAGG
TATGTCAATCCTGTTGATCCCGTTTTCTTTCGACTTCGTGGATGCGGTGT
GCCTCGCGGCTGTCCTCGGATTTCTATGCCAAGCCGTTGGCGTGCTCGCA
GCATTGCTGTGGGGTGCTTGGTGCGGCACCCGCAACAAGGTGGCTGTTTC
GTCGCCGGAGGTTGAATGCGAAACGCAGTCCGGTGCAACCTTTGGCTACC
GGCATGTGGATGGGGAACTCCAAAGATCGACAGGGACTCACTCGACCTCT
GTCGACAACCAAGAGAGCATTGTTAAAGAGGGTGCGCTACGCTCCCAGTT
GGCCGCCCCCAGAAATATCTCGCACACGGTAAACCTGAATTCGGCACCTG
CTTCACCCACGCCGATGAGACGGCAATCCGCACCAACAAGCCCGTTCCAT
AAGTACGAAACGCTTCGCCACGGGCACGAACGCGCCGTCCCAAGTAAGAT
GCAACCGCTGGACCCAAACAAGCTGGGTCTTTTCATGCGACTACAAGCGT
GGTTTTCCACGCACAACCATTCCTCGACAGCACCAGCCGAAAAGTCAATG
CAAACAGCAGAGGCAGCGCCGGCGGCACCGCCGGCTGATCCTGTTGCCGT
GCACTGGGCGCTTGCTCTCGTTGCAACGTTGGAGCTTGTCCTTTCGGCGA
TCAGTGACCGGAATCAGGACGACGAAGAATAAATCGAAAACGTTAACACA
GCAACGCACTTACATGGCGAAATGCACGGCGTAACCTGCGTGGGGGCAGG
AATCGAGCCTGGACCGTGCTTGCCGCGGTGTCGGGGTGTGGTTAGAATGC
CTGGCCAGCTGTGGTTACCGCTTTCTGTGAGATTTAGTATGTAGCGACAA
AGAGCAGACACTCGTAACAGAATGAAGACAGGGTAAGATTTAGACGGTGT
GGACGGGTCATTGTCGCGGAATAATGACTAAAATTGGGGATGTCGGCAGG
GTCATAAATGGGTAATGATGCCATGGTAACCAGTGTGGAGCTGACCCGAC
CACTACGTGCGTAGGCTGAGCTAGTTCTATTTGCTACTCCTGTGTTTTCT
CTTTTCGTCAGAACCAGTGGACAGTGAGGGGCACCATGAGGAGCCGTGTA
TACCGTTTCCTAAATTGGTATGCAGTCTTTACTGTAAGCTACGACGCCTC
TACTGGGCTCTGAATTGGATTTCCCGTCTCTATGCTTCTGGACATATCTC
GCCGGGGGACTCTGGATAGATCTACTGTTCGCAAGATTACTGTGACAGAC
ATAAGACTACCCTGAGGGGCAGCATATGCGGGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig626:70667..74200-

>mRNA_P-littoralis_Contig626.11.1 ID=mRNA_P-littoralis_Contig626.11.1|Name=mRNA_P-littoralis_Contig626.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=690bp|location=Sequence derived from alignment at P-littoralis_Contig626:70667..74200- (Pylaiella littoralis U1_48)
ATGTTTGGTATGTCAATCCTGTTGATCCCGTTTTCTTTCGACTTCGTGGA
TGCGGTGTGCCTCGCGGCTGTCCTCGGATTTCTATGCCAAGCCGTTGGCG
TGCTCGCAGCATTGCTGTGGGGTGCTTGGTGCGGCACCCGCAACAAGGTG
GCTGTTTCGTCGCCGGAGGTTGAATGCGAAACGCAGTCCGGTGCAACCTT
TGGCTACCGGCATGTGGATGGGGAACTCCAAAGATCGACAGGGACTCACT
CGACCTCTGTCGACAACCAAGAGAGCATTGTTAAAGAGGGTGCGCTACGC
TCCCAGTTGGCCGCCCCCAGAAATATCTCGCACACGGTAAACCTGAATTC
GGCACCTGCTTCACCCACGCCGATGAGACGGCAATCCGCACCAACAAGCC
CGTTCCATAAGTACGAAACGCTTCGCCACGGGCACGAACGCGCCGTCCCA
AGTAAGATGCAACCGCTGGACCCAAACAAGCTGGGTCTTTTCATGCGACT
ACAAGCGTGGTTTTCCACGCACAACCATTCCTCGACAGCACCAGCCGAAA
AGTCAATGCAAACAGCAGAGGCAGCGCCGGCGGCACCGCCGGCTGATCCT
GTTGCCGTGCACTGGGCGCTTGCTCTCGTTGCAACGTTGGAGCTTGTCCT
TTCGGCGATCAGTGACCGGAATCAGGACGACGAAGAATAA
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