prot_P-littoralis_Contig626.8.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig626.8.1
Unique Name	prot_P-littoralis_Contig626.8.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	400

Homology

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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 411 bits (1056), Expect = 6.450e-139
Identity = 307/413 (74.33%), Postives = 329/413 (79.66%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVFAQPDKGFEASDESDGSGGTVGESSATKQERREAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHRQRTSSEYQGTSNGGRGEESSSGRXXXXX-----------ADADGSWERGARAPGDGPSSGGTPFSSASQPSSRAAA--PPPSLSTGNVMDWRGVAGRGXXXXXXXXXXXGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXX-MNSIGGMDRRR 399
            MNVIQEIKRINERELEQGVSGKASWH+EYKDSAWVFAGGF YDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQ+STILAVDNFNGI+LLGRTIRVDHKHKYSLPAEVREKAEK++EER+ARGEAPS KGPQWRPGVAYEGKQLATSH+FHKGVDVFA+P++G  +SD+SDG+GGT+GES+           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXX   X         +  SSE+    NGGRGEE   GR                ADA G+WERGARAPGDGPSSGGTPFSS+SQPS RA A  PP  LS+GNVMDWRG+ GR            GRGXXXXXXXXX      XXXXXXXXXXXXX MNS+GGMDRRR
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSDGAGGTLGESAXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHGKDEKTRSSEHPRAGNGGRGEERVGGRHDHRRGKEPPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAG---------GRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402

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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 229 bits (585), Expect = 4.840e-68
Identity = 115/183 (62.84%), Postives = 144/183 (78.69%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSG-KASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVFAQPDKGFEASDESDG 182
            MNV++EI+R+NE+EL++G +G + SWH +YKDSAWVF G     L+EGD+LCVMSQWGEIED++L R+K TGKSKGF F+KYE+QRSTILAVDN NGI+LL RT+RVDHK KY+LP EV EKAE++E+ R+  GE   G GP+W+PG AYEGK+L   HD  KGVD+FA   +G E   E DG
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFAPVQEG-EVDAEEDG 182

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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 219 bits (558), Expect = 7.900e-67
Identity = 118/188 (62.77%), Postives = 139/188 (73.94%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKA-SWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQ---WRPGVAYEGKQLATSHDFHKGVDVFAQPDKGFEASDESDGSG 184
            MNVIQEIKRINE EL +GV+G A SWH +Y+DSA+VF GG  YDL EGD+LCV SQWGE+EDINL R++ TGKSKGF FIKYE+QRST+LAVDNFNG+ELLGR IRVDH  KY LP+ +REK E +EE     G  P G G +   +RPG AYEG +LA   + HKGVD++  PD      D  DGSG
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYG--PEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGPD------DSDDGSG 181

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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 217 bits (553), Expect = 3.650e-66
Identity = 105/171 (61.40%), Postives = 136/171 (79.53%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEE---ERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVFA 168
            MNV++EI++INEREL++G++G ASWH++YKDSAWVF GG  Y+LTEGD++CV+SQWGEIEDINL R++DTGKSKGF F+KYE+QRSTILAVDN NG +LLGR +RVDH  KY LP E+++K + Q+E   E+   G  P      W+PG AYEGK++  SH   +GVDV+A
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAA-WKPGHAYEGKEIRGSHTLAQGVDVWA 170

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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A485KUA3_9STRA (Aste57867_11943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA3_9STRA)

HSP 1 Score: 207 bits (528), Expect = 3.760e-61
Identity = 106/167 (63.47%), Postives = 128/167 (76.65%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGV  + SWH+ Y+DSAWV+ GG SY+LTEGDILCV SQ GEIEDINL R+KD+GKS GFCFIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K E   +E +   +   G     RPG AYEGK+LA  +D H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGYEGSWHHIYRDSAWVYIGGLSYELTEGDILCVFSQVGEIEDINLVRDKDSGKSMGFCFIKYEHHMSTVLAVDNFNGSSLLERMLRVDHVHKYKLPKELRDK-EDNVDEPVDENDEMRG-----RPGHAYEGKELANKYDIHEGVDVF 161

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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.440e-60
Identity = 105/167 (62.87%), Postives = 130/167 (77.84%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGVS + SWH+ Y++SAWV+ G  SY+LTEGDILCV SQ GEIEDINL R+KDTGKS GFCFIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K   +++E +   +A      + +PG AYEGK+LA  +D H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSYEGSWHHIYRESAWVYVGSLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSLGFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDK---EDDEGVLDDDAEL----RGQPGHAYEGKELANKYDIHQGVDVF 160

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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 205 bits (522), Expect = 2.780e-60
Identity = 107/167 (64.07%), Postives = 125/167 (74.85%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGVS + SWH+ Y+DSAWV+ GG SYDLTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K     EE +        +G   +PG AYEGK+L    D H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERLLRVDHVHKYKLPKELRDK-----EENVVADHDDELRG---KPGHAYEGKELENKFDIHQGVDVF 159

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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A024UQN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQN5_9STRA)

HSP 1 Score: 208 bits (529), Expect = 4.820e-60
Identity = 109/167 (65.27%), Postives = 126/167 (75.45%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGV  + SWH+ Y+DSAWV+ GG SY+LTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K    EE  +A  E   GK     PG AYEGK+LA   D H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGIEGSWHHIYRDSAWVYVGGLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERMLRVDHVHKYKLPKELRDK----EENEVADDEELRGK-----PGHAYEGKELANKFDIHQGVDVF 158

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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 200 bits (509), Expect = 7.310e-60
Identity = 98/168 (58.33%), Postives = 126/168 (75.00%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQ--EEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDV 166
            MNV++EI+R+N++EL+QG+  + SWHY Y+DSAW++ G  SY+L+EGD+LCV SQ+GEIEDINL R+K+TGKS GF FIKYE+ RST+LAVDNFNG  LL RT+RVDH HKY LP E+R+K + Q  EEE   RG+          PG AY+GK L   +D H+GVD 
Sbjct:    1 MNVVKEIERLNQQELDQGIGYEGSWHYIYRDSAWIYVGSLSYELSEGDVLCVFSQFGEIEDINLVRDKETGKSMGFAFIKYEDHRSTVLAVDNFNGSTLLERTLRVDHVHKYKLPKEIRDKEDAQDFEEEEKLRGQ----------PGHAYKGKDLENKYDIHQGVDT 158

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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 199 bits (507), Expect = 4.790e-58
Identity = 103/168 (61.31%), Postives = 128/168 (76.19%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGK-ASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVF 167
            MNVIQEIKRIN+RELE G++G  ASWH +YK+SAWV+ G   Y LTEGDILC MSQWGEIEDIN  R+KDTGK KGF F+KYE+QRST+LAVDNFNGIEL+ RT+RVDH  KY LP EV++K ++ EE+    G+       ++ PG AY+  +LA+ +D  KG D+F
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPKGFAFVKYEDQRSTVLAVDNFNGIELVDRTLRVDHCEKYRLPKEVQDKEDQLEEDAKLLGKQHDSSS-KFGPGHAYKDMELASKYDIAKGQDLF 167

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPK4_ECTSI	6.450e-139	74.33	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A4D9D1V2_9STRA	4.840e-68	62.84	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A7S2RL84_9STRA	7.900e-67	62.77	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A835YJH4_9STRA	3.650e-66	61.40	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A485KUA3_9STRA	3.760e-61	63.47	Aste57867_11943 protein n=1 Tax=Aphanomyces stella...	[more]
A0A6G0X0J2_9STRA	1.440e-60	62.87	RRM domain-containing protein n=1 Tax=Aphanomyces ...	[more]
W4H400_9STRA	2.780e-60	64.07	RRM domain-containing protein n=3 Tax=Aphanomyces ...	[more]
A0A024UQN5_9STRA	4.820e-60	65.27	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A1V9ZVW6_9STRA	7.310e-60	58.33	U2 snRNP component IST3 n=1 Tax=Thraustotheca clav...	[more]
A0A7S3YEY6_HETAK	4.790e-58	61.31	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 190..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 309..329
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..399
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..222
None	No IPR available	PANTHER	PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..250
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..250
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 34..107 e-value: 2.0E-19 score: 80.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 35..105 e-value: 8.4E-16 score: 57.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 33..111 score: 15.067479
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..108 e-value: 9.4E-24 score: 86.0
IPR045844	Ist3-like, RNA recognition motif	CDD	cd12411	RRM_ist3_like	coord: 24..112 e-value: 1.05716E-60 score: 189.387
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 25..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig626	contig	P-littoralis_Contig626:19342..22240 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig626.8.1	mRNA_P-littoralis_Contig626.8.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig626 19304..22560 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig626.8.1 ID=prot_P-littoralis_Contig626.8.1|Name=mRNA_P-littoralis_Contig626.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=400bp
MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDIL
CVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELL
GRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYE
GKQLATSHDFHKGVDVFAQPDKGFEASDESDGSGGTVGESSATKQERREA
KRKRKEARAEARERKKKAKDSSTGSSSTRSHTKKKKKHDHKDKKQTEGRG
GGGGGGAGVHRQRTSSEYQGTSNGGRGEESSSGRRGGGGADADGSWERGA
RAPGDGPSSGGTPFSSASQPSSRAAAPPPSLSTGNVMDWRGVAGRGSGGR
GGGGRGGGRGGGRGGRESGGRGGGGGGRQGGGGRGSEGMNSIGGMDRRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR045844	RRM_Ist3-like
IPR035979	RBD_domain_sf