mRNA_P-littoralis_Contig626.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig626.8.1
Unique NamemRNA_P-littoralis_Contig626.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 411 bits (1056), Expect = 4.080e-137
Identity = 307/413 (74.33%), Postives = 329/413 (79.66%), Query Frame = 3 
Query:   39 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVFAQPDKGFEASDESDGSGGTVGESSATKQERREAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHRQRTSSEYQGTSNGGRGEESSSGRXXXXX-----------ADADGSWERGARAPGDGPSSGGTPFSSASQPSSRAAA--PPPSLSTGNVMDWRGVAGRGXXXXXXXXXXXGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXX-MNSIGGMDRRR 1235
            MNVIQEIKRINERELEQGVSGKASWH+EYKDSAWVFAGGF YDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQ+STILAVDNFNGI+LLGRTIRVDHKHKYSLPAEVREKAEK++EER+ARGEAPS KGPQWRPGVAYEGKQLATSH+FHKGVDVFA+P++G  +SD+SDG+GGT+GES+           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXX   X         +  SSE+    NGGRGEE   GR                ADA G+WERGARAPGDGPSSGGTPFSS+SQPS RA A  PP  LS+GNVMDWRG+ GR            GRGXXXXXXXXX      XXXXXXXXXXXXX MNS+GGMDRRR
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSDGAGGTLGESAXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHGKDEKTRSSEHPRAGNGGRGEERVGGRHDHRRGKEPPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAG---------GRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402
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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 230 bits (587), Expect = 6.350e-67
Identity = 115/183 (62.84%), Postives = 144/183 (78.69%), Query Frame = 3 
Query:   39 MNVIQEIKRINERELEQGVSG-KASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVFAQPDKGFEASDESDG 584
            MNV++EI+R+NE+EL++G +G + SWH +YKDSAWVF G     L+EGD+LCVMSQWGEIED++L R+K TGKSKGF F+KYE+QRSTILAVDN NGI+LL RT+RVDHK KY+LP EV EKAE++E+ R+  GE   G GP+W+PG AYEGK+L   HD  KGVD+FA   +G E   E DG
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFAPVQEG-EVDAEEDG 182
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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 220 bits (560), Expect = 9.340e-66
Identity = 118/188 (62.77%), Postives = 139/188 (73.94%), Query Frame = 3 
Query:   39 MNVIQEIKRINERELEQGVSGKA-SWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQ---WRPGVAYEGKQLATSHDFHKGVDVFAQPDKGFEASDESDGSG 590
            MNVIQEIKRINE EL +GV+G A SWH +Y+DSA+VF GG  YDL EGD+LCV SQWGE+EDINL R++ TGKSKGF FIKYE+QRST+LAVDNFNG+ELLGR IRVDH  KY LP+ +REK E +EE     G  P G G +   +RPG AYEG +LA   + HKGVD++  PD      D  DGSG
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYG--PEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGPD------DSDDGSG 181
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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 218 bits (555), Expect = 4.240e-65
Identity = 105/171 (61.40%), Postives = 136/171 (79.53%), Query Frame = 3 
Query:   39 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEE---ERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVFA 542
            MNV++EI++INEREL++G++G ASWH++YKDSAWVF GG  Y+LTEGD++CV+SQWGEIEDINL R++DTGKSKGF F+KYE+QRSTILAVDN NG +LLGR +RVDH  KY LP E+++K + Q+E   E+   G  P      W+PG AYEGK++  SH   +GVDV+A
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAA-WKPGHAYEGKEIRGSHTLAQGVDVWA 170
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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A485KUA3_9STRA (Aste57867_11943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA3_9STRA)

HSP 1 Score: 208 bits (530), Expect = 3.980e-60
Identity = 106/167 (63.47%), Postives = 128/167 (76.65%), Query Frame = 3 
Query:   39 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVF 539
            MNVI+EI+R+NE+ELEQGV  + SWH+ Y+DSAWV+ GG SY+LTEGDILCV SQ GEIEDINL R+KD+GKS GFCFIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K E   +E +   +   G     RPG AYEGK+LA  +D H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGYEGSWHHIYRDSAWVYIGGLSYELTEGDILCVFSQVGEIEDINLVRDKDSGKSMGFCFIKYEHHMSTVLAVDNFNGSSLLERMLRVDHVHKYKLPKELRDK-EDNVDEPVDENDEMRG-----RPGHAYEGKELANKYDIHEGVDVF 161
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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.500e-59
Identity = 105/167 (62.87%), Postives = 130/167 (77.84%), Query Frame = 3 
Query:   39 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVF 539
            MNVI+EI+R+NE+ELEQGVS + SWH+ Y++SAWV+ G  SY+LTEGDILCV SQ GEIEDINL R+KDTGKS GFCFIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K   +++E +   +A      + +PG AYEGK+LA  +D H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSYEGSWHHIYRESAWVYVGSLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSLGFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDK---EDDEGVLDDDAEL----RGQPGHAYEGKELANKYDIHQGVDVF 160
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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.870e-59
Identity = 107/167 (64.07%), Postives = 125/167 (74.85%), Query Frame = 3 
Query:   39 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVF 539
            MNVI+EI+R+NE+ELEQGVS + SWH+ Y+DSAWV+ GG SYDLTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K     EE +        +G   +PG AYEGK+L    D H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERLLRVDHVHKYKLPKELRDK-----EENVVADHDDELRG---KPGHAYEGKELENKFDIHQGVDVF 159
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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A024UQN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQN5_9STRA)

HSP 1 Score: 209 bits (531), Expect = 5.150e-59
Identity = 109/167 (65.27%), Postives = 126/167 (75.45%), Query Frame = 3 
Query:   39 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVF 539
            MNVI+EI+R+NE+ELEQGV  + SWH+ Y+DSAWV+ GG SY+LTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K    EE  +A  E   GK     PG AYEGK+LA   D H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGIEGSWHHIYRDSAWVYVGGLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERMLRVDHVHKYKLPKELRDK----EENEVADDEELRGK-----PGHAYEGKELANKFDIHQGVDVF 158
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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 201 bits (511), Expect = 7.110e-59
Identity = 98/168 (58.33%), Postives = 126/168 (75.00%), Query Frame = 3 
Query:   39 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQ--EEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDV 536
            MNV++EI+R+N++EL+QG+  + SWHY Y+DSAW++ G  SY+L+EGD+LCV SQ+GEIEDINL R+K+TGKS GF FIKYE+ RST+LAVDNFNG  LL RT+RVDH HKY LP E+R+K + Q  EEE   RG+          PG AY+GK L   +D H+GVD 
Sbjct:    1 MNVVKEIERLNQQELDQGIGYEGSWHYIYRDSAWIYVGSLSYELSEGDVLCVFSQFGEIEDINLVRDKETGKSMGFAFIKYEDHRSTVLAVDNFNGSTLLERTLRVDHVHKYKLPKEIRDKEDAQDFEEEEKLRGQ----------PGHAYKGKDLENKYDIHQGVDT 158
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BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 200 bits (509), Expect = 4.650e-57
Identity = 103/168 (61.31%), Postives = 128/168 (76.19%), Query Frame = 3 
Query:   39 MNVIQEIKRINERELEQGVSGK-ASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELLGRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYEGKQLATSHDFHKGVDVF 539
            MNVIQEIKRIN+RELE G++G  ASWH +YK+SAWV+ G   Y LTEGDILC MSQWGEIEDIN  R+KDTGK KGF F+KYE+QRST+LAVDNFNGIEL+ RT+RVDH  KY LP EV++K ++ EE+    G+       ++ PG AY+  +LA+ +D  KG D+F
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPKGFAFVKYEDQRSTVLAVDNFNGIELVDRTLRVDHCEKYRLPKEVQDKEDQLEEDAKLLGKQHDSSS-KFGPGHAYKDMELASKYDIAKGQDLF 167
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig626.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK4_ECTSI4.080e-13774.33RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9D1V2_9STRA6.350e-6762.84RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2RL84_9STRA9.340e-6662.77Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835YJH4_9STRA4.240e-6561.40RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A485KUA3_9STRA3.980e-6063.47Aste57867_11943 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0X0J2_9STRA1.500e-5962.87RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4H400_9STRA2.870e-5964.07RRM domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A024UQN5_9STRA5.150e-5965.27Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9ZVW6_9STRA7.110e-5958.33U2 snRNP component IST3 n=1 Tax=Thraustotheca clav... [more]
A0A7S3YEY6_HETAK4.650e-5761.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig626contigP-littoralis_Contig626:19304..22560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPK4
Preferred nameRBMX2
PFAMsRRM_1,zf-CCCH
Model size1558
Max annot lvl2759|Eukaryota
KEGG koko:K07919,ko:K13107,ko:K14807
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006401,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007623,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042752,GO:0042789,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048511,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070274,GO:0070727,GO:0071011,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097525,GO:0097659,GO:0120114,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
Exons4
Evalue1.06e-139
EggNOG OGsKOG0126@1|root,KOG0126@2759|Eukaryota
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-12_000920.1
EC3.6.4.13
DescriptionmRNA-containing ribonucleoprotein complex export from nucleus
Cds size1200
COG categoryL
BRITEko00000,ko01000,ko03009,ko03041,ko04031,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig626.8.1prot_P-littoralis_Contig626.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig626 19342..22240 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791306.0476625-UTR-P-littoralis_Contig626:19303..193411680791306.0476625-UTR-P-littoralis_Contig626:19303..19341Pylaiella littoralis U1_48UTRP-littoralis_Contig626 19304..19341 +
1680791306.1147218-UTR-P-littoralis_Contig626:22240..225601680791306.1147218-UTR-P-littoralis_Contig626:22240..22560Pylaiella littoralis U1_48UTRP-littoralis_Contig626 22241..22560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791306.0617468-CDS-P-littoralis_Contig626:19341..195631680791306.0617468-CDS-P-littoralis_Contig626:19341..19563Pylaiella littoralis U1_48CDSP-littoralis_Contig626 19342..19563 +
1680791306.077319-CDS-P-littoralis_Contig626:20099..202281680791306.077319-CDS-P-littoralis_Contig626:20099..20228Pylaiella littoralis U1_48CDSP-littoralis_Contig626 20100..20228 +
1680791306.0888696-CDS-P-littoralis_Contig626:20792..209571680791306.0888696-CDS-P-littoralis_Contig626:20792..20957Pylaiella littoralis U1_48CDSP-littoralis_Contig626 20793..20957 +
1680791306.103893-CDS-P-littoralis_Contig626:21556..222401680791306.103893-CDS-P-littoralis_Contig626:21556..22240Pylaiella littoralis U1_48CDSP-littoralis_Contig626 21557..22240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig626.8.1

>prot_P-littoralis_Contig626.8.1 ID=prot_P-littoralis_Contig626.8.1|Name=mRNA_P-littoralis_Contig626.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=400bp
MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDIL
CVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQRSTILAVDNFNGIELL
GRTIRVDHKHKYSLPAEVREKAEKQEEERIARGEAPSGKGPQWRPGVAYE
GKQLATSHDFHKGVDVFAQPDKGFEASDESDGSGGTVGESSATKQERREA
KRKRKEARAEARERKKKAKDSSTGSSSTRSHTKKKKKHDHKDKKQTEGRG
GGGGGGAGVHRQRTSSEYQGTSNGGRGEESSSGRRGGGGADADGSWERGA
RAPGDGPSSGGTPFSSASQPSSRAAAPPPSLSTGNVMDWRGVAGRGSGGR
GGGGRGGGRGGGRGGRESGGRGGGGGGRQGGGGRGSEGMNSIGGMDRRR*
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mRNA from alignment at P-littoralis_Contig626:19304..22560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig626.8.1 ID=mRNA_P-littoralis_Contig626.8.1|Name=mRNA_P-littoralis_Contig626.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3257bp|location=Sequence derived from alignment at P-littoralis_Contig626:19304..22560+ (Pylaiella littoralis U1_48)
CAGCGTTGACGTATAATCAATACCCCCTGCTTGGAGCCATGAACGTGATC
CAGGAGATCAAGCGCATCAACGAGAGGGAACTGGAGCAGGGAGTGTCGGG
CAAGGCCTCCTGGCACTATGAGTACAAGGACAGTGCCTGGGTTTTCGCTG
GAGGCTTTTCCTACGACCTCACCGAGGGCGACATCCTGTGTGTCATGTCG
CAGTGGGGAGAGATCGAGGACATCAATCTGTGCCGAGAGAAGGACACAGG
GAAATCTAAGGTACTGCGCGAGGTTTCTACTACTCCGTATATAGCAGCTG
TATAAGCGTAAGCTAGTGCTTGTTTTTAGAAATGTGAAAGAGAAACGGGA
TACAAATTATCGCGCTGTTGTGACGGTTGCCCCTTCTGAAGGCTGGAGGC
TGTCCCAATCAGAACAACAGCCGAAACGGGAGCAGCTCCTCCGTTAGGGC
CTCCTGCTAGTGCTTGCCTTACGATCATATCATAAAGCTACCATTCGACC
AATACCTCAGCACCTCGGAACACTCCGAGGCGATTGATCCTCACCAACTA
GCGGTCTCATTTACTTGATAAGTACTTCGAAGAAGAAAGATAAAATATGC
ATTCTACAACGGCCGAGGGGAGGTTGGTCCGTGAAGTACTTGCATAATCT
GGACCCTCGATCCACATCAGCTACTTTCGGACTACCCCTGGCCGCCCGCT
ACGTCGTACTATTGACCTGCACTGGTGATATAATACCGCTCACGAATCCT
TCAACTTAGATCCCAATCGATGACTGATATGTACCACGTATTTCAGGGAT
TTTGCTTCATCAAGTACGAGAACCAACGGAGCACAATCCTAGCAGTGGAC
AATTTTAACGGCATCGAGCTGTTGGGGCGCACGATTCGAGTCGACCACAA
ACACAAGTACTCCCTGCCCGCGGAGGTGAGGGCACTCACTGAGAGCGAAC
GAGGCATGCTGGCAGACACTGGATGATGGAGGCTGGCTCCCAGACTATCA
TGAAATGAACATCAGCCTCTCTTCAAAGTAAAATGTACGATCATAGATCA
CAGCTGTGCGTGTTGTGTACCTGGTACTGTTTTACGTCCGTTTCCACTGA
TGGTGTTGCTCCCACTTTGGAACCCCCCCTTCCCCCGTTTTCGGCAAAAA
TAAACTTTTAACACACGAAGTGCCAGGTACAGCAACAGTAGAATCACAGC
AGTCCTAGCAGTTGCTCAGGTGCTTCGCATACAATGTTCGGCACTTCTGC
TCTACTTACGCTGTCTACGTACATGTACTTCACCCGGGGGGGAACAACAT
TGGTCCCGTGTATGCAGGGCGACCGGCGGTGCACAGCAACCTCGGAGCCA
ATCTTTTATCATTTTTTTCATCATTTGGTGCATACAGCAGCAGCATGTGC
ATGCCTTGCTCTTGTTATCCGTTCATGTGCTGTGCCATAGTGTCCATGAG
ACGAATGTTTTTCACGAAAGTACGTCGCTGAAACAACAGGTGAGGGAGAA
AGCGGAGAAGCAGGAGGAGGAAAGAATCGCTAGGGGCGAGGCGCCCTCGG
GGAAGGGGCCGCAGTGGAGGCCGGGCGTCGCCTACGAAGGAAAACAGCTG
GCCACCTCACACGACTTCCACAAGGGTGTCGATGTATTTGCACAACCAGA
CAAGGTGACCGCACAAAAATTACCACATTGGCGTGCGCTGCGACTTCCCT
GATTTGTGACGAATGTTTTTGGAAGGAGTCTTGCCCTACCTTTCATCGCA
GACAAGGCGTAGAAGTGGTCTGTGCCTGCAGGCTGCAGAGATAGTGGAGG
GTTATGATAAAGAAAACGTGATGTCAAATACGATTCATGCACTGGCTGAT
TGACAACGGGCGAAGATACTCAATGGGATACTCTTAGGACTAAAATAAGT
ATTTTTCTTTCGGTAGTGACTTTTTGGTCGCTCGAACTAGGTTTACGGCT
CTCAGCTTTCCTCTCACTTTGAGTTTACAGACAAGATAGAGAAGAGAAAC
ATCAATCGTTGCCAAGGCTAGTTGATCAATCCACCGAAGTACCTCCACGT
TTTTACCGTCGAAATCACGCTAAGTTTGCCCCGAGTACCGCAGTCCTCTT
TTCGACTCTTGCAAATATCATATGCAGTCTATCATATTTGTCCAAGCCGG
GACGCTCATTCCTATCGTTCTGAACTCAGCAAGCTGCCGCACGCTATCGC
ATGCGACATGTGTTTTTGCTCCCGGGTATATAACGTATTGTTTTCGCGCA
CAGGGTTTTGAGGCAAGCGATGAGAGCGACGGTAGTGGAGGAACAGTGGG
CGAGTCCTCGGCGACGAAGCAAGAACGGCGGGAGGCGAAGCGGAAGCGAA
AAGAAGCACGGGCGGAAGCAAGAGAGCGGAAAAAGAAGGCCAAAGATTCC
TCCACCGGCAGTAGCAGCACCAGAAGTCACACAAAGAAAAAAAAGAAGCA
CGACCACAAGGACAAGAAACAAACAGAAGGCCGCGGCGGCGGCGGCGGCG
GCGGCGCGGGGGTGCACCGGCAGAGAACGTCAAGCGAATATCAAGGCACC
AGCAACGGCGGGCGGGGTGAAGAAAGTTCTAGTGGCCGGCGTGGTGGCGG
CGGTGCGGACGCAGATGGTTCGTGGGAGCGGGGCGCACGCGCACCCGGCG
ACGGTCCTTCCTCCGGCGGCACCCCCTTCTCTTCTGCGTCGCAGCCTTCG
AGTCGTGCGGCGGCGCCTCCGCCGTCCCTATCGACCGGCAATGTCATGGA
CTGGAGGGGCGTTGCAGGGCGTGGCTCTGGCGGACGAGGAGGAGGAGGAA
GGGGCGGGGGTAGGGGTGGTGGCCGAGGGGGGAGAGAGAGTGGCGGGCGA
ggGGGGGGTGGAGGCGGCCGACAGGGTGGTGGTGGGCGCGGGAGCGAAGG
GATGAACTCAATCGGAGGCATGGATCGCCGACGGTAGTCAACGCTCTATT
TTACGATTGTTTTTGTTACCGCCGGTAAAATGGGCTTGTTGTGCTGGCAA
TGAAAGTGACCCAGGTGCACGTCTGTCCCGTAGTTACAGACGCGAGCAGA
TTCTTTGGGGACGTTAGAAAAATAACCGCTTCCCCCGTGACTCGGTGTGG
GTGAGGAGTTCAGGCATTTATGTGGTTTTGGTGACTGTTGGACGCGGATG
ACCTCCCTTGACTTGTGGGATTTGGATTGGGAGGCCGCGGCAGGTCATTT
CGTGGCGAGTTTTCAATGAAAAGTCCTTCCTGGGAGAGAAAAAACTGTAC
ATAACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig626:19304..22560+

>mRNA_P-littoralis_Contig626.8.1 ID=mRNA_P-littoralis_Contig626.8.1|Name=mRNA_P-littoralis_Contig626.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1200bp|location=Sequence derived from alignment at P-littoralis_Contig626:19304..22560+ (Pylaiella littoralis U1_48)
ATGAACGTGATCCAGGAGATCAAGCGCATCAACGAGAGGGAACTGGAGCA
GGGAGTGTCGGGCAAGGCCTCCTGGCACTATGAGTACAAGGACAGTGCCT
GGGTTTTCGCTGGAGGCTTTTCCTACGACCTCACCGAGGGCGACATCCTG
TGTGTCATGTCGCAGTGGGGAGAGATCGAGGACATCAATCTGTGCCGAGA
GAAGGACACAGGGAAATCTAAGGGATTTTGCTTCATCAAGTACGAGAACC
AACGGAGCACAATCCTAGCAGTGGACAATTTTAACGGCATCGAGCTGTTG
GGGCGCACGATTCGAGTCGACCACAAACACAAGTACTCCCTGCCCGCGGA
GGTGAGGGAGAAAGCGGAGAAGCAGGAGGAGGAAAGAATCGCTAGGGGCG
AGGCGCCCTCGGGGAAGGGGCCGCAGTGGAGGCCGGGCGTCGCCTACGAA
GGAAAACAGCTGGCCACCTCACACGACTTCCACAAGGGTGTCGATGTATT
TGCACAACCAGACAAGGGTTTTGAGGCAAGCGATGAGAGCGACGGTAGTG
GAGGAACAGTGGGCGAGTCCTCGGCGACGAAGCAAGAACGGCGGGAGGCG
AAGCGGAAGCGAAAAGAAGCACGGGCGGAAGCAAGAGAGCGGAAAAAGAA
GGCCAAAGATTCCTCCACCGGCAGTAGCAGCACCAGAAGTCACACAAAGA
AAAAAAAGAAGCACGACCACAAGGACAAGAAACAAACAGAAGGCCGCGGC
GGCGGCGGCGGCGGCGGCGCGGGGGTGCACCGGCAGAGAACGTCAAGCGA
ATATCAAGGCACCAGCAACGGCGGGCGGGGTGAAGAAAGTTCTAGTGGCC
GGCGTGGTGGCGGCGGTGCGGACGCAGATGGTTCGTGGGAGCGGGGCGCA
CGCGCACCCGGCGACGGTCCTTCCTCCGGCGGCACCCCCTTCTCTTCTGC
GTCGCAGCCTTCGAGTCGTGCGGCGGCGCCTCCGCCGTCCCTATCGACCG
GCAATGTCATGGACTGGAGGGGCGTTGCAGGGCGTGGCTCTGGCGGACGA
GGAGGAGGAGGAAGGGGCGGGGGTAGGGGTGGTGGCCGAGGGGGGAGAGA
GAGTGGCGGGCGAggGGGGGGTGGAGGCGGCCGACAGGGTGGTGGTGGGC
GCGGGAGCGAAGGGATGAACTCAATCGGAGGCATGGATCGCCGACGGTAG
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