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Homology
BLAST of mRNA_P-littoralis_Contig626.6.1 vs. uniprot
Match: A0A6H5KYC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYC3_9PHAE) HSP 1 Score: 334 bits (856), Expect = 1.550e-107 Identity = 210/394 (53.30%), Postives = 247/394 (62.69%), Query Frame = 2
Query: 14 MTSTPRHDAEQGHQQIWSASRSXXXXXXXXXXXXXXXXXXQAQRRYRSLFHQAAKEYRAWREGEDDSQRALGSAFHLLDRLRILQPDGETGGNISLGGLENLPGCRELLIRKHTMELERVMRLWRALVQQMKGQVSRVEESLAEAWQLHRSDPARA-RRPLHRPAP---PXXXXXXXXXXXXXXTLAPARETSSPQQQAAVAVGLRSSSSLASHASA-SGLQQRLSNRGGAGEGGGCGGDAGLPRPPTTQGGAAALAPSPRAGRSSGGQQAGLLGAGXXXXXXXXXXXAYA-------AVSGGGGVWRATNTTLVGPAEYLQWLGDLSSMMVHEQWRKEELLARVAFGPEAEAAANRAHVQARWSSRSQDSFLDQSVIDAAIASSQLVPPPRSR 1159
M + R D E+ QQ WS S+ QAQRRYRSL+HQAAKEY AWR+GE DSQRALGSAFHL+DRL++ +PD +TGG+I+LGGLE LPGCRELLI KHT ELERVMRLWRALV+QM+GQVSRVEE LAEAWQLHRSDPARA R+P H P P P T+ P+ Q A+ AVG+RS+S SHA+A G QQR+ + G + G G G P+ + +G A + R G G QAGL G A++ G T +VGPAEYLQWLGDLSSM+VHEQWRKEELL RVAFGPEA +A RAHVQA WSSRS SFLDQ IDAA ++Q+VPP +SR
Sbjct: 1 MATPSRRDVEEEQQQTWSGSKVRVGGVLARQPSPSPAKARQAQRRYRSLYHQAAKEYWAWRKGEGDSQRALGSAFHLIDRLQLFEPDQQTGGDINLGGLEKLPGCRELLIHKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRQPRHPPPPSPSPTLPTAQSRSPGNAFTMPPS------PQHASAAVGVRSTS--VSHATAPKGRQQRVDHVGA--KEGDVDGSTGNPQHSSREGAEVAASSQGRLGDIGNGLQAGLPATGGMKDGDRAGAVVSEIPEETTRAMATGEDRAGGVTTVVVGPAEYLQWLGDLSSMLVHEQWRKEELLLRVAFGPEAASARLRAHVQAHWSSRSAHSFLDQPSIDAATTAAQVVPPLKSR 384
BLAST of mRNA_P-littoralis_Contig626.6.1 vs. uniprot
Match: D7FPK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK5_ECTSI) HSP 1 Score: 262 bits (669), Expect = 3.650e-80 Identity = 170/337 (50.45%), Postives = 200/337 (59.35%), Query Frame = 2
Query: 14 MTSTPRHDAEQGHQQIWSASRSXXXXXXXXXXXXXXXXXXQAQRRYRSLFHQAAKEYRAWREGEDDSQRALGSAFHLLDRLRILQPDGETGGNISLGGLENLPGCRELLIRKHTMELERVMRLWRALVQQMKGQVSRVEESLAEAWQLHRSDPARARRPLHRPAPPXXXXXXXXXXXXXXTLAPARETSSPQ--QQAAVAVGLRSSSSLASHASA-SGLQQRLSNRGGAGEGGGCGGDAGLPRPPTTQGGAAALAPSPRAGRSSGGQQAGLLGAGXXXXXXXXXXXAYA-------AVSGGGGVWRATNTTLVGPAEYLQWLGDLSSMMVHEQWRKE 994
M + R D E+ QQ WS S+ QAQRRYRSL+HQAAKEY AWREGE+DSQRALGS FHLLDRL++ +PD +TGG+++LGGLE LPGCRELLI KHT ELERVMRLWRALV+QM+GQVSRVEE LAE WQLHRSDPARA PAPP + +P + P Q A AVG+RS+S ASH +A G QR+ + G + G G G PR + +G A +P R G G QAGL G A++ GG T VGPAE+LQWLGDLSSM+VHEQWRKE
Sbjct: 1 MATPSRRDVEEEQQQTWSGSKVRGGGVLGRQPSPSPAKARQAQRRYRSLYHQAAKEYWAWREGENDSQRALGSVFHLLDRLQLFEPDQQTGGDVNLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEGWQLHRSDPARALLQPRHPAPPSPSPPLPTAL----SRSPGNAFTIPPSPQHAGAAVGVRSTS--ASHTTAPEGRLQRVHHVGA--KEGDIDGSTGNPRHSSLEGAEVAASPQGRLGDIGNGLQAGLPATGGMKEGDRAGAVVSEIPGETARAMAAGGDRAGGVTTMTVGPAEHLQWLGDLSSMLVHEQWRKE 329
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1491 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_000930.1 |
| Cds size | 1149 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791305.930036-UTR-P-littoralis_Contig626:14259..14440 | 1680791305.930036-UTR-P-littoralis_Contig626:14259..14440 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig626 14260..14440 - |
| 1680791305.9412947-UTR-P-littoralis_Contig626:14584..14732 | 1680791305.9412947-UTR-P-littoralis_Contig626:14584..14732 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig626 14585..14732 - |
| 1680791306.017892-UTR-P-littoralis_Contig626:19167..19180 | 1680791306.017892-UTR-P-littoralis_Contig626:19167..19180 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig626 19168..19180 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791305.9551308-CDS-P-littoralis_Contig626:14732..14900 | 1680791305.9551308-CDS-P-littoralis_Contig626:14732..14900 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig626 14733..14900 - |
| 1680791305.9656951-CDS-P-littoralis_Contig626:15349..15928 | 1680791305.9656951-CDS-P-littoralis_Contig626:15349..15928 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig626 15350..15928 - |
| 1680791305.9785433-CDS-P-littoralis_Contig626:16586..16718 | 1680791305.9785433-CDS-P-littoralis_Contig626:16586..16718 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig626 16587..16718 - |
| 1680791305.9910257-CDS-P-littoralis_Contig626:17094..17196 | 1680791305.9910257-CDS-P-littoralis_Contig626:17094..17196 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig626 17095..17196 - |
| 1680791306.0041866-CDS-P-littoralis_Contig626:18999..19167 | 1680791306.0041866-CDS-P-littoralis_Contig626:18999..19167 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig626 19000..19167 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig626.6.1 >prot_P-littoralis_Contig626.6.1 ID=prot_P-littoralis_Contig626.6.1|Name=mRNA_P-littoralis_Contig626.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=383bp
MTSTPRHDAEQGHQQIWSASRSRGGDGAGGQPSPSPAKARQAQRRYRSLF HQAAKEYRAWREGEDDSQRALGSAFHLLDRLRILQPDGETGGNISLGGLE NLPGCRELLIRKHTMELERVMRLWRALVQQMKGQVSRVEESLAEAWQLHR SDPARARRPLHRPAPPPSPSPPLPSTPTTETLAPARETSSPQQQAAVAVG LRSSSSLASHASASGLQQRLSNRGGAGEGGGCGGDAGLPRPPTTQGGAAA LAPSPRAGRSSGGQQAGLLGAGGRSGGSQVEAMAYAAVSGGGGVWRATNT TLVGPAEYLQWLGDLSSMMVHEQWRKEELLARVAFGPEAEAAANRAHVQA RWSSRSQDSFLDQSVIDAAIASSQLVPPPRSR* back to topmRNA from alignment at P-littoralis_Contig626:14260..19180- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig626.6.1 ID=mRNA_P-littoralis_Contig626.6.1|Name=mRNA_P-littoralis_Contig626.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4921bp|location=Sequence derived from alignment at P-littoralis_Contig626:14260..19180- (Pylaiella littoralis U1_48) TGCCGGCCTCATCATGACTTCTACGCCCCGACACGATGCAGAACAGGGGC
ATCAGCAAATCTGGTCAGCATCTAGGAGTCGAGGGGGAGATGGGGCGGGG
GGTCAACCGAGCCCAAGTCCAGCGAAGGCTAGACAAGCACAGCGTCGGTA
CCGATCTCTATTTCACCAGGCCGCCAAAGAGGTACTATCTTACAGCAAGT
AAGAGACTGCCGAGCATTCTGGCGGCTCAATGAATTATTTCCTTCTGATA
AACGAATTATCCAATGATCTTACCGCCGTGTGCCGTGTGGCTGCTGCCGC
CGACCATGGGTGTCACACTCATAATACGATACAATATACTCCGTACAGTA
TGTATATCATACATTGCACACAAGTCTGGCTCTCTGCTTTTGTTCACAAT
TCACACACAGATGCTGTACTGCTGTGCGTTCACGATCTATCGCGTTGTTT
TCTACTGAAATATTTCTTCGCCGCACAATGCATGTCGTATCGCTCTTGCT
CTTGCTCTTGCTCATCTGCGATCGGAGACAAACGCCATTGTTGCAGGTCT
ATAAGATAGACCGTGCACAACCGAAACGTTGTTTTCTTATTTTCCCTCAT
CCTCGATGAGCGTGCTTAACATATATTTCGAAGTACTTCGAAGTACTCGT
AGTTGCTGTGTCTGAGGCTGGGTCTTAACCGGAAATCAAAATCAAAGTTC
ATATTAGAGGTGGAAAATCCAAAGAACACATCCTGTGATCGGGTGAAATG
AGGAGGAGTCAGCTTCCGCCCTGCAGCACAGAGACGGCTCTTCCCATCTA
ACTTATATATTCCAAATCCTAATTATGATTTCAAATAAATGATTTCGTAT
TCAATTGAAATCAAAGTTGGCGAAACGTAACACATAAAATTGAGATATTG
CTCATTTCTGGTCTACTCGATGGTCTTGGGCAGGTTCTTCTGCTGTCTCA
CAGAAACTACTTACTGTTTGTATCGGAGCGGAGCAACACGTACGTACGAA
CACACATGTGTATTAGTATGCTCTGCAGGACCAACAACAGCAGCAGCAGC
AAGGGGTGAGGTGTGAGACGAGGTGTGAGACATGGTTGCGATTTTTCGCC
ACACAAGGAGGAGGGAACCCAGTCGTTGGCTCTCCAAGCTGGTCTTCCGT
GCAAGCCACTTTTCACCAGCATACATGCACACACACCATCCATGCTGCCC
CGCATACATATGCCATCGGATTGGTCTTTCTTGGTGTTGCTATCGCCACG
TCCACAGCTTTTGTTTGTAGGGACCAAAGCGCTGTACAAGTCCCGAGGAT
GCTCCGTTATTCAATTCTGATTTCGATTTCGGCAATTTTGGTTAAGACAC
CTTCGAATCAAAACCACAATTGGGTTGGATCTTCCAGCTCTAATATGAAC
TTTGATTTCTAATTTTGATTTTGATTTTCCGGTGAAGATCCAGCCTGAGA
GCCTTCGCTTACTGGTGGTACTACTGTAATCTTGGTCAATCAAAACAAAT
ACCTGGTAGTATTTCTCAGAGAGCGCAGCCTTCGCCGTAACAAAATTACT
TCTTTAGGCTGCAGACGGAGCGATTGCATTCAAATGCACCAACATATTTT
TGCATAAGCGCATCATATGAACACAACCCAGGACTCTGAACGCCGATTTC
ACGCACGTCGTGCAGCCCGCCCCAAGCCACAGCGAACACCAGATACACCG
TCGACAACCCGAAACAAGTGGAGGTTGTAGCAAATTTACTACAGTATGGA
GCAGAAGACCATCCGTGCATCGACCGGTACCACCTTCCATCCGTAGTCCC
GATAGCATCTAACGCTGAGTTCACGTCAAAGTCTACCGTCGCTATCGCCA
CCACATCGTCGTTGCCTGAGTTCTACTCTATGTCCTGAACTCGCTAGAGA
CTTAAGTTCGTTTTGAAACTCTTCCCCCGAAACACTTGCGTTTGTGTCTG
TGCTCACGATGATGGTGAACAACTTGTGCTGCAGTACCGGGCATGGCGAG
AAGGCGAGGATGACTCGCAGCGAGCACTAGGATCCGCGTTCCACCTGCTT
GATCGCCTCCGGATCCTTCAGCCGGACGGAGAGACGGTGATTCTTTGCAC
TTTTGATTTTCATTGGGGATTGCCTTGCATTTGAAGCCGAGTTGGCGCTG
CGCAGATAGAGGTGATTCGTGTACGTGCACTACAGGGATCGCACTCGTGG
TCCGAAACCCATGTTCTTGGTTTCACCGATATTCTTCGATTCGAATCATA
GCGTTACGCGCCATATCATACCATATCACGTAGTCTTGGCAACAAGAACC
CACAACGACACGAAATCCGCGGGGGGGTTCTCCTCCCCCCCACCTCCCGT
GGTCTTGAGAGGGGTGCACGATCAGTGGTTAAGCACCAAGGCGCGCAACT
AACTGAGCAGATGCTAACACTCTTCCGCTCCTCGCGCGCATTACGTTGCC
CTTTGTCCTTAGGGCGGTAATATTAGTCTCGGCGGCCTGGAGAACCTGCC
CGGATGTCGGGAGCTCCTGATCCGCAAGCACACCATGGAGCTGGAGCGGG
TCATGCGCCTCTGGCGCGCGCTCGTGCAGCAGATGAAAGGGCAGGTGACC
ATGCCGACAACGGTCACTTTTTTTGTCAGGGTACTTTTCTAGGTACTTTC
CACCACTAGTTTGTCACGGACAAACGATGGATCAACGCTGGATGGATGCG
ACGCGCCCGAGCGATTTGCGATAACAGCTGACGCGTACAAGTGGGGCGCT
ACTGGCCTCCGTCCGTCCGTTTCCTTTTTTTTCTTCGATTTGTGCCGTGA
AATCGCGGAAGTCTCCACTCCCTTCTGCTTTAAGGTTCCTACCGCTGCAC
GCGCCTCGACTACACGTGGCCGGAAAAGACCCGGTGCTGTTCGACTGCTG
TGAATATTGGTTCATATCCCTTCCTACTTCCGATCTCGTGTACACCCAAT
GCACATCTGGTCCAACAATGTAGGCATCTTGTGGTATACGCCAGTGCCAC
ATTCCACACCGACTACATAACAACAAGCATATTTGTTATCTCTTGTGAGA
GTTTGTCTTATGCGTTGCGAGCATGTGCCTCCCTCCGCGTAAAACGACAC
ATATTATCGTAGCAGTACTGATTCTTTACTACGTACAGAGTAGGCGCGAA
CCTTATCAATTTCCACGTGAAGTGGGCACGAACGTTTTTATCAAATGTTG
TTTCATCGAAACCGACCCCCTTCGTTTGTCTCAACCGACCTCCCGGCAGC
AGGTGTCTCGTGTCGAAGAGTCACTTGCCGAAGCCTGGCAGTTGCACCGC
TCCGACCCGGCTCGAGCGCGTCGACCACTACACCGCCCTGCGCCGCCACC
GTCACCGTCCCCGCCGCTACCTTCGACACCGACGACCGAAACCCTAGCCC
CAGCCCGGGAGACCTCCTCGCCGCAGCAACAGGCTGCCGTGGCGGTCGGG
TTACGATCATCATCGTCACTGGCAAGTCACGCCTCCGCTTCCGGACTCCA
GCAGCGTTTGTCAAACCGTGGCGGGGCTGGTGAGGGCGGTGGTTGCGGTG
GTGACGCGGGTCTTCCTCGCCCCCCCACCACACAAGGGGGTGCGGCGGCG
TTGGCACCATCGCCTCGGGCTGGACGTAGCAGCGGTGGGCAACAAGCGGG
TTTGTTGGGGGCGGGTGGCAGAAGCGGAGGAAGCCAAGTGGAAGCGATGG
CCTATGCGGCTGTATCGGGCGGCGGTGGGGTATGGCGAGCGACGAACACC
ACGTTAGTGGGGCCTGCGGAGTACCTGCAGTGGCTCGGAGATTTGTCCAG
CATGATGGTCCACGAACAGTGGCGAAAGGAGGTGTGACTCAGCAGTGCAT
TTTTGCTGAGTTTGTCTTGGATTCTTGGGGTATGTTTCGTTTCTGGCGGA
GAGGCGTGTTCTGGTTCGTGACACGGCCTGAGGTATTTTTTTATATCCGT
TGGTACTTGTCCATCCTCTGCTGGCTTGCCAGGAGGTACGCGAAGGAGCA
AGAGCACGGTGTGGGGTGGGCAAGATGTGCTCACGCTAAATAGCGGCTGA
CCTAAATATGCCTCCTGTTGGCTTCATGCAACGGAAGCCAAGTACCACTG
TTCTACCTCTGAAGCGTAGGTATCCCACTCCGTCAGCACCACCCCCTCAC
CCAAGAGGCGCGAGGCGCTCGAGATGACCGTTCAGCATTCCAAAGCTTGC
TTACTTAACCCTTCGCCCCCACTCTACTCGCTCTCTCTCTCTCCTCCTCC
GCTCCTTTTTCGCCGCTCCACCCACGGCAGGAACTGTTGGCGCGCGTTGC
GTTCGGACCCGAGGCAGAGGCGGCGGCGAACAGGGCCCACGTGCAGGCCC
GCTGGTCGTCGCGATCGCAGGATAGCTTTCTCGACCAATCCGTCATCGAT
GCGGCCATCGCCTCCTCGCAACTCGTGCCGCCCCCGCGGAGTCGATAGTA
CTAAAAAATGCCTTACACCTGTGGGTGGTATGCGCGCTGCTGCTGCTCGA
CAGATGAGCTGCCTGCTGACAATATCCACGATGGTCGCGAATGCACTCCT
TCCATATTCCCTGGTATGTGTTGACCTAGGGGTAACTCCAGCCTCAGTTG
CAGCCCCCCCCGTTGTTATTCCCCCGCAAGAGAGAGGGGGAGAAAGGGTT
CTGAGCGGAACAGCAAAACGGTCGTACACATGCACGCCGTATCGGACGAA
CAGGGTCGCCCTTGAGAACTGGGGCCACAGCGTTCGGAAGAATATACGCG
GTTGGACCTCGTGCAAAAATTACCGGCTCCCCGCTATTTTGTTGTCGATT
GTTGGTTGCACGGCCAGGTCGACTAGCCTCGCAACAGGTTTGTTGGGGTT
GTCTGGATTCACCAGAGTGCACGGAATCACTCAATACATTTTTGTTCCTT
CACTCTGTAAATGTGGGCTCG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig626:14260..19180- >mRNA_P-littoralis_Contig626.6.1 ID=mRNA_P-littoralis_Contig626.6.1|Name=mRNA_P-littoralis_Contig626.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1149bp|location=Sequence derived from alignment at P-littoralis_Contig626:14260..19180- (Pylaiella littoralis U1_48) ATGACTTCTACGCCCCGACACGATGCAGAACAGGGGCATCAGCAAATCTG GTCAGCATCTAGGAGTCGAGGGGGAGATGGGGCGGGGGGTCAACCGAGCC CAAGTCCAGCGAAGGCTAGACAAGCACAGCGTCGGTACCGATCTCTATTT CACCAGGCCGCCAAAGAGTACCGGGCATGGCGAGAAGGCGAGGATGACTC GCAGCGAGCACTAGGATCCGCGTTCCACCTGCTTGATCGCCTCCGGATCC TTCAGCCGGACGGAGAGACGGGCGGTAATATTAGTCTCGGCGGCCTGGAG AACCTGCCCGGATGTCGGGAGCTCCTGATCCGCAAGCACACCATGGAGCT GGAGCGGGTCATGCGCCTCTGGCGCGCGCTCGTGCAGCAGATGAAAGGGC AGGTGTCTCGTGTCGAAGAGTCACTTGCCGAAGCCTGGCAGTTGCACCGC TCCGACCCGGCTCGAGCGCGTCGACCACTACACCGCCCTGCGCCGCCACC GTCACCGTCCCCGCCGCTACCTTCGACACCGACGACCGAAACCCTAGCCC CAGCCCGGGAGACCTCCTCGCCGCAGCAACAGGCTGCCGTGGCGGTCGGG TTACGATCATCATCGTCACTGGCAAGTCACGCCTCCGCTTCCGGACTCCA GCAGCGTTTGTCAAACCGTGGCGGGGCTGGTGAGGGCGGTGGTTGCGGTG GTGACGCGGGTCTTCCTCGCCCCCCCACCACACAAGGGGGTGCGGCGGCG TTGGCACCATCGCCTCGGGCTGGACGTAGCAGCGGTGGGCAACAAGCGGG TTTGTTGGGGGCGGGTGGCAGAAGCGGAGGAAGCCAAGTGGAAGCGATGG CCTATGCGGCTGTATCGGGCGGCGGTGGGGTATGGCGAGCGACGAACACC ACGTTAGTGGGGCCTGCGGAGTACCTGCAGTGGCTCGGAGATTTGTCCAG CATGATGGTCCACGAACAGTGGCGAAAGGAGGAACTGTTGGCGCGCGTTG CGTTCGGACCCGAGGCAGAGGCGGCGGCGAACAGGGCCCACGTGCAGGCC CGCTGGTCGTCGCGATCGCAGGATAGCTTTCTCGACCAATCCGTCATCGA TGCGGCCATCGCCTCCTCGCAACTCGTGCCGCCCCCGCGGAGTCGATAG back to top
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