mRNA_P-littoralis_Contig625.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig625.50.1
Unique NamemRNA_P-littoralis_Contig625.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig625.50.1 vs. uniprot
Match: A0A6H5KRV9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV9_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 4.270e-33
Identity = 89/199 (44.72%), Postives = 115/199 (57.79%), Query Frame = 3 
Query:    3 GILADFGLVVRKEDASSRLNIGAGTVDYSALEVNTTGSVLASELFSVAACFIEQMLSMCPFNGEQLLKASIEPRSSLAAEREPLAETVEDCTED---------LSSLEEDEEDYDALRAEYELEIATASSRLEEVRVQEWRLGVRGDEWRPDTAALAALSEMGQPLPFFMETLEEESRTVEERQDAATEEAKRCPRKVF 572
            G+LADFGL   KE A     IGAGTV+Y A EV TTGS L SELF+V+ CF+E MLS  PF+G+ LL AS   RS L   ++ L   +    E+          + +E    D +A        IA ASSRLE  R  EW LG+R DEWRP+  AL+AL+    PL  ++   + ++R+ E ++D AT EAK  PRKVF
Sbjct:  504 GLLADFGLCTHKEVAVLPWQIGAGTVEYQATEVATTGSSLCSELFAVSVCFLEMMLSHNPFDGKALLLASERRRSYLEGVKKELLHFLSHLPEEGHTRGRVVPENHMESQNTDREA--------IAEASSRLENTRRTEWLLGIRSDEWRPNAEALSALARTEVPLEMYVVPSQADTRSREIKEDWATVEAKSSPRKVF 694
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BLAST of mRNA_P-littoralis_Contig625.50.1 vs. uniprot
Match: D7FLV9_ECTSI (Serine/threonine protein kinase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV9_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 8.490e-32
Identity = 87/191 (45.55%), Postives = 111/191 (58.12%), Query Frame = 3 
Query:    3 GILADFGLVVRKEDASSRLNIGAGTVDYSALEVNTTGSVLASELFSVAACFIEQMLSMCPFNGEQLLKASIEPRSSLAAEREPLAETVEDCTEDLSSLEEDEEDYDALRAEYELE-IATASSRLEEVRVQEWRLGVRGDEWRPDTAALAALSEMGQPLPFFMETLEEESRTVEERQDAATEEAKRCPRKVF 572
            G+LADFGL   KE A     IGAGT +Y A EV TTGS L SELF+V+ CF+E MLS  PF+G+ L  AS   RS L   R+ L   +    ED +       D+       E E +A ASSRLE  R  EW LG+R DEWRPD  AL+AL+    PL  ++   + ++R+ E +++ A  EAK  PRKVF
Sbjct:  457 GLLADFGLCTHKEIAVLPWQIGAGTPEYQATEVATTGSSLCSELFAVSVCFLEMMLSRNPFDGKALRLASERRRSYLEGVRKELLHVLSHHAEDGNYRGHLAPDHHMESQNNEREALAEASSRLENTRRTEWLLGIRSDEWRPDAEALSALARTEVPLEVYVVPSQADTRSREIKENWAGVEAKSSPRKVF 647
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BLAST of mRNA_P-littoralis_Contig625.50.1 vs. uniprot
Match: D7FGS5_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS5_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.580e-31
Identity = 85/194 (43.81%), Postives = 116/194 (59.79%), Query Frame = 3 
Query:    3 GILADFGLVVRKEDASSRLNIGAGTVDYSALEVNTTGSVLASELFSVAACFIEQMLSMCPFNGEQLLKASIEPRSSLAAEREPLAETVEDCTEDLSSLEE----DEEDYDALRAEYELEIATASSRLEEVRVQEWRLGVRGDEWRPDTAALAALSEMGQPLPFFMETLEEESRTVEERQDAATEEAKRCPRKVF 572
            GI+ DFGL V+KE A    +IG GT +YSA EV TTGS L+SELFSV+ CF+EQMLS  PF+GE LL AS   R+ L    E      +   + +++       D E   A R  + L +  A S L+++R  EW LGVR  +W+P+  A +AL  M  PL  +++  E ++RT E+R+ AA+ EAK  P KVF
Sbjct:  325 GIITDFGLCVQKEVAILPSHIGDGTANYSAKEVATTGSRLSSELFSVSVCFLEQMLSRNPFDGEALLLASEGRRAYLQRVGEEQLNIAKRLVQGVNAWVALPYGDTEIRAAERQAHTLALEEAYSTLKDIRSTEWSLGVRNGQWQPNAVARSALDSMVVPLTLYVKPSETDTRTREDREHAASGEAKNSPLKVF 518
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig625.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KRV9_9PHAE4.270e-3344.72Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FLV9_ECTSI8.490e-3245.55Serine/threonine protein kinase, putative n=1 Tax=... [more]
D7FGS5_ECTSI2.580e-3143.81Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig625contigP-littoralis_Contig625:149690..152578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLV9
PFAMsPkinase,Pkinase_Tyr
Model size857
Max annot lvl2759|Eukaryota
KEGG koko:K07198
KEGG Pathwayko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,ko05418,map04068,map04140,map04150,map04151,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410,map05418
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.82e-14
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota
EC2.7.11.11
Descriptionprotein serine/threonine kinase activity
Cds size411
COG categoryG
BRITEko00000,ko00001,ko01000,ko01001,ko03029,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig625.50.1prot_P-littoralis_Contig625.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig625 149854..152296 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791305.3654077-UTR-P-littoralis_Contig625:149689..1498531680791305.3654077-UTR-P-littoralis_Contig625:149689..149853Pylaiella littoralis U1_48UTRP-littoralis_Contig625 149690..149853 +
1680791305.430054-UTR-P-littoralis_Contig625:152296..1525781680791305.430054-UTR-P-littoralis_Contig625:152296..152578Pylaiella littoralis U1_48UTRP-littoralis_Contig625 152297..152578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791305.3812208-CDS-P-littoralis_Contig625:149853..1498831680791305.3812208-CDS-P-littoralis_Contig625:149853..149883Pylaiella littoralis U1_48CDSP-littoralis_Contig625 149854..149883 +
1680791305.3924634-CDS-P-littoralis_Contig625:150311..1505121680791305.3924634-CDS-P-littoralis_Contig625:150311..150512Pylaiella littoralis U1_48CDSP-littoralis_Contig625 150312..150512 +
1680791305.404533-CDS-P-littoralis_Contig625:151485..1516171680791305.404533-CDS-P-littoralis_Contig625:151485..151617Pylaiella littoralis U1_48CDSP-littoralis_Contig625 151486..151617 +
1680791305.4152615-CDS-P-littoralis_Contig625:152248..1522961680791305.4152615-CDS-P-littoralis_Contig625:152248..152296Pylaiella littoralis U1_48CDSP-littoralis_Contig625 152249..152296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig625.50.1

>prot_P-littoralis_Contig625.50.1 ID=prot_P-littoralis_Contig625.50.1|Name=mRNA_P-littoralis_Contig625.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
MLSMCPFNGEQLLKASIEPRSSLAAEREPLAETVEDCTEDLSSLEEDEED
YDALRAEYELEIATASSRLEEVRVQEWRLGVRGDEWRPDTAALAALSEMG
QPLPFFMETLEEESRTVEERQDAATEEAKRCPRKVF*
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mRNA from alignment at P-littoralis_Contig625:149690..152578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig625.50.1 ID=mRNA_P-littoralis_Contig625.50.1|Name=mRNA_P-littoralis_Contig625.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2889bp|location=Sequence derived from alignment at P-littoralis_Contig625:149690..152578+ (Pylaiella littoralis U1_48)
CAGGGATCCTCGCTGACTTCGGCCTGGTAGTCCGGAAGGAGGACGCGTCC
TCGCGGCTGAACATCGGAGCCGGAACGGTGGATTACTCCGCCCTGGAGGT
CAACACGACGGGGTCGGTGCTCGCGTCCGAGCTGTTTTCGGTTGCGGCTT
GCTTCATCGAGCAGATGCTCAGCATGTGCCCCTTCAATGGAGAGGTAAGG
GCCGGTGTCCGCAAAGCATCGTCGAGACTCCTTTACGGCACAAGAGTATT
GCAGGAAAAAATCATGTTTGCAGGTGCAAGCGAGAAGTCACGAAAGCAAG
CTGGCTTTTTTTTCCGCCAGGGTAAGGAAATATTGTACCAACAGAGGTTA
GTGTAGAAAGGGTCGTCTGAGAACTTTGACAATGCTCTCCCAAGAGCAAT
ACTCACTCACCCGCACCATTGATATTGCCGCTGCATATCAAACGGTAAAC
CCTTTTTGAGGTTTTGCTGTGAATGCGGTCCCGATTCGATGCTCAAGTTC
GTGCAATTTTCCCACGTGTTTACTAGGGTCTTTTTGACTAATGTACTGCC
CGTTTCTCGATTTGGTTGTCGCGTTTGTTTTCTGAAATCCCCTACATGCT
GTCACAACGCATGACGGAACAGCAACTTCTCAAAGCTAGCATCGAGCCTC
GGAGTAGCCTGGCGGCGGAGCGAGAACCCCTCGCCGAGACAGTCGAGGAC
TGCACGGAAGACCTCTCCAGCCTGGAGGAAGACGAGGAGGACTACGACGC
CCTTCGAGCAGAATACGAGCTGGAGATTGCCACGGCGTCTTCACGGCTGG
AGGAAGTGAGGGTGCAGGAATGGGTGAGACATTGAGACGGGTTGTCGATT
TTGTGCTTGTTCCGTGATTTCGTTCGCGTCGTAGTGCCTGATGAGGGCAG
GGCGGTCAGGAGTTTATTCTTTTTTTTCTGCGAGTGATCTACTCCATATC
TAGATGAATCGCACTTTTGGTTTGTGCACATGGATATGGTCTGTATGTTC
GCGCTAGCAAATGCTACCTTTGACGTCTAGATTTCCTCTACAGAACATGC
TTCAAGATTTTTTTTCCCCGATTTCCCGTGGGTTTGGCTAAGTTTGCAGA
CCATTTTTTTTTTCCCGCGTCTGGAAGCGCAAAAAATTCTTATTTTTGAT
CAACGCTTGTCGAGAAACGCCAAATCAAGCGGCCATCAAGCTTATTTTGC
TTCGCTTGGGTGCGGTTTCTGCGAAGGTGCCCTTCTCCAGAAAAAAAAAT
ATTGAAAGGCAAAACTTCACGAATCTGGTTGCAGGTGGCACATCTCTCAG
AGCAATCAATAGCGGCACGATTGCAAGAAGTTTCACGCGCATCATGCTTG
GACTTGAGGAACCCTCAAAGCGCGGATGGTCCTTGGACTATAGACCGCAC
AAAGCTGCTTGTCAGCTGGACTTCATTTTTGTGGGATTCAATGCTGTATG
TATCGTTAGTTTCATCATTTTTCATATTTTTTCGCCATTTTTCTTCATCG
TGCCTCATGGTTCATCAAAACATGCCGTCTGATATATGTGTAGTAATTGC
TTTTGCCCATGGTAGTGGGTGTGTCATATGATCGTGTTCTTCTCTATGTG
TTTTGCCTGGTGTCTTAAAATTACTTCGTACGAGGTATTAATTTATTGCA
TTTCACTGGAGTCCACCAGGACTTAGTTAGAAACTGGTCGGTCTTCGCCC
TTGCCACCCAACCCGTCTGCGGCGCACTCGCCCGCTTTGTTTCTGCGCTT
TACTCACGGGGCATTGAAACAAACTCCACAACAACAAATGGAACAGCGGC
TGGGCGTGCGCGGCGATGAGTGGCGCCCGGACACCGCAGCCTTGGCGGCG
CTGAGCGAGATGGGCCAGCCCCTGCCGTTTTTCATGGAAACGCTGGAGGA
AGAAAGCCGGACGGTCGAGGAGAGACAGGCGAGACCCGCAAGGGGTGCAT
ACAAGATTGCCTCGACCCTTTTCGCACAAACAATACGTCAAGTACTGCAG
ATTAACCGTTCCGGGGCGCCGTTGAATAAAACGTCCGTATTTGGTACAAA
GTGAGCTCTACCTGACGGGAATAGTCTTGTCCAAAGAAGAGGCCTCTCAC
TCATCTTTACCACAGTCGGTATGCCCCGTTCAAAGTCACACCTACTGTAT
GTGGTGCATCTGCCCTTCGAGCCGACCAAATTGGCACAAGTATCTTGTTG
GCCCTACACTCCTCAGCACTACGTAGGGAGATACCGATCGAATCGGCGTT
TTTTGTGTTCGATGATGTGACGAGGGTTGTCCTGGGCCGAAAGGCTACGT
TCATTGTGTAGAGGTGAGGCTGCACGAGAAAGGGACAACCCCTGCGGCTT
CTTCGGGCGTACTGTATTGTGACCGGCACTTGTTCGTGAGGTGGACTTAT
CCACCAGGCCACTCAATTAGCGCTAGCCTGAGTGGTCGAGTGGATAGCTG
ACTGAGTGGTCTAGGGGATAAGTCAACCTAGCGAACAGCACTGTCAAAAT
GAGGCATGCACCGAGCTCATGCCCTCCCCGCACCCCCGCCGACCCTCCCT
TCTCCCCAGGACGCAGCAACGGAAGAAGCCAAACGCTGCCCCCGCAAAGT
GTTTTGAGATAGGCTGGATGGAGTGGCTGCCGGGTTCGACCAGAGCGCCC
TGCGACGAGGGGCTGCGAAAGGCCGTTGAGTTCGTGATCGGCAACGGGAT
GCTCGCAGCCAACCCCGAGGAAAGGCCCAAGACCGCCGGTGCCGCGAGGG
AACTCCTCCACGAGGCTTTGAAGATCTACAGGCTGGAGCAGGAGAAGAGC
TTAGAGGACGAGTAGCGGGTCGAGGAATCGGAATCTGGGTAGGACGGCGA
GGCAAGAGATTCTGGTGGATTAAAGAGAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig625:149690..152578+

>mRNA_P-littoralis_Contig625.50.1 ID=mRNA_P-littoralis_Contig625.50.1|Name=mRNA_P-littoralis_Contig625.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig625:149690..152578+ (Pylaiella littoralis U1_48)
ATGCTCAGCATGTGCCCCTTCAATGGAGAGCAACTTCTCAAAGCTAGCAT
CGAGCCTCGGAGTAGCCTGGCGGCGGAGCGAGAACCCCTCGCCGAGACAG
TCGAGGACTGCACGGAAGACCTCTCCAGCCTGGAGGAAGACGAGGAGGAC
TACGACGCCCTTCGAGCAGAATACGAGCTGGAGATTGCCACGGCGTCTTC
ACGGCTGGAGGAAGTGAGGGTGCAGGAATGGCGGCTGGGCGTGCGCGGCG
ATGAGTGGCGCCCGGACACCGCAGCCTTGGCGGCGCTGAGCGAGATGGGC
CAGCCCCTGCCGTTTTTCATGGAAACGCTGGAGGAAGAAAGCCGGACGGT
CGAGGAGAGACAGGACGCAGCAACGGAAGAAGCCAAACGCTGCCCCCGCA
AAGTGTTTTGA
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