mRNA_P-littoralis_Contig625.22.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig625.22.2
Unique NamemRNA_P-littoralis_Contig625.22.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig625.22.2 vs. uniprot
Match: D7G6W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W8_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 5.850e-128
Identity = 228/307 (74.27%), Postives = 261/307 (85.02%), Query Frame = 1 
Query:  160 AKRVRRRQSRLNINDA-LSSMVDVHDVAYWSQWRLAIHGVCAQFEAAAQVEVDAWSRERVDHVSISRQQALSSEIRHLEAQLGKHTSMNAKLEAASFENAEALAKTESARVTAAAVVTRLQAQISHEKQAASVSARELEKKISLSTIAYQGLEESLHQAEAAKLEAQDKGAELLREAARTAAEMSEVRLAMATALEESRAEKHNREALQADLAVLREKYSALKRRFVDAGKKVEAVRAERDALRRERAVLEDKLADVEKFQSSKRGQALDRMEQELAAERMARVELEADRDDLQSQLAAALHATGRT 1077
            A+R R++Q R     + L ++VD HD+AYWSQWRLAIHGVCA+FEAAAQVE DAWSRER+DHVSISRQQALSSE+RHLE QLGKHTSMNAKLEAA  ENA ALA  ESAR+ AAA V+RLQAQIS++++ A  SAR+LE+KISLSTIAYQGLEESL Q + AK +A+ K   LLRE+ART  E+ E RLA++ ALEE+RAEK  REALQ+DL  LREKYSALKRRFVDAG+KVEAVR ERDALR+ERA L+DKLADVEKFQSS RGQALDRMEQ+LA+ERM RVELEADRDDLQSQLAAAL A  R+
Sbjct:   12 AQRQRQQQHRHCAKGSKLLNIVDAHDIAYWSQWRLAIHGVCARFEAAAQVEADAWSRERLDHVSISRQQALSSEVRHLETQLGKHTSMNAKLEAALCENAGALATAESARIAAAATVSRLQAQISYDQETAKASARDLEEKISLSTIAYQGLEESLQQVQEAKRQAEAKCEGLLRESARTDEELREARLAISRALEEARAEKERREALQSDLTALREKYSALKRRFVDAGRKVEAVRGERDALRQERATLQDKLADVEKFQSSNRGQALDRMEQDLASERMQRVELEADRDDLQSQLAAALQAAARS 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig625.22.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6W8_ECTSI5.850e-12874.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig625contigP-littoralis_Contig625:40470..43469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1734
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011960.1
Cds size948
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791304.263005-UTR-P-littoralis_Contig625:40469..406011680791304.263005-UTR-P-littoralis_Contig625:40469..40601Pylaiella littoralis U1_48UTRP-littoralis_Contig625 40470..40601 +
1680791304.312821-UTR-P-littoralis_Contig625:42815..434691680791304.312821-UTR-P-littoralis_Contig625:42815..43469Pylaiella littoralis U1_48UTRP-littoralis_Contig625 42816..43469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791304.2753186-CDS-P-littoralis_Contig625:40601..409881680791304.2753186-CDS-P-littoralis_Contig625:40601..40988Pylaiella littoralis U1_48CDSP-littoralis_Contig625 40602..40988 +
1680791304.2851558-CDS-P-littoralis_Contig625:41417..417501680791304.2851558-CDS-P-littoralis_Contig625:41417..41750Pylaiella littoralis U1_48CDSP-littoralis_Contig625 41418..41750 +
1680791304.3010695-CDS-P-littoralis_Contig625:42587..428151680791304.3010695-CDS-P-littoralis_Contig625:42587..42815Pylaiella littoralis U1_48CDSP-littoralis_Contig625 42588..42815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig625.22.2prot_P-littoralis_Contig625.22.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig625 40602..42815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig625.22.2

>prot_P-littoralis_Contig625.22.2 ID=prot_P-littoralis_Contig625.22.2|Name=mRNA_P-littoralis_Contig625.22.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=316bp
MPAVTSVEKAKRVRRRQSRLNINDALSSMVDVHDVAYWSQWRLAIHGVCA
QFEAAAQVEVDAWSRERVDHVSISRQQALSSEIRHLEAQLGKHTSMNAKL
EAASFENAEALAKTESARVTAAAVVTRLQAQISHEKQAASVSARELEKKI
SLSTIAYQGLEESLHQAEAAKLEAQDKGAELLREAARTAAEMSEVRLAMA
TALEESRAEKHNREALQADLAVLREKYSALKRRFVDAGKKVEAVRAERDA
LRRERAVLEDKLADVEKFQSSKRGQALDRMEQELAAERMARVELEADRDD
LQSQLAAALHATGRT*
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mRNA from alignment at P-littoralis_Contig625:40470..43469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig625.22.2 ID=mRNA_P-littoralis_Contig625.22.2|Name=mRNA_P-littoralis_Contig625.22.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3000bp|location=Sequence derived from alignment at P-littoralis_Contig625:40470..43469+ (Pylaiella littoralis U1_48)
GCGGAACGCGCCCTGTGCAGTAGCTACCCCAACCGTGGGTACCTGCGCGA
GGGCGTACGCCTCATCGGGAGCAGCCACCACCTTTACCTCACGCTCATAT
TCTACCGTAGAGATCTCGTAAATGTCAAGGTTATGCCTGCCGTAACCTCT
GTCGAAAAAGCCAAACGGGTTCGGCGACGACAGTCCCGTCTGAACATCAA
CGATGCGTTGAGTAGCATGGTTGATGTTCACGACGTCGCGTACTGGAGCC
AATGGCGCCTCGCCATACACGGGGTGTGCGCCCAGTTTGAAGCAGCAGCA
CAGGTCGAAGTGGATGCATGGTCTCGGGAGCGAGTCGATCATGTCAGCAT
CTCAAGGCAGCAGGCTTTGAGCAGCGAAATTAGACATCTCGAGGCCCAGC
TTGGCAAGCACACGAGCATGAATGCCAAGCTGGAGGCGGCGTCATTTGAG
AACGCGGAGGCGCTGGCTAAGACGGAGTCGGCACGGGTAACCGCCGCAGC
TGTTGTTACTCGATTACAGGTCGGGTAACGTTGTTTGTGTGTATAATACT
ATGTTCGTGTGATGCCTACAGTTTGTGCCTAGATATGTTGTCATCGTTAA
GGCCAGGAGAAGCAGCTATAACACCCGGCTGCTGACTGCTGCTGTCATTT
GATCCCACTGCTGAAGCTGATTACTGCTGGCTGCATATCCTGTATGAGAC
GTGACGTCGATTGGTCTCACCCATGCCATTATCAAGAAACTGCTTATAGC
TGCCGCTCTCTGTTTTTACTGGTGTCGGTGTACACTATGTTTTACTTCTT
ATCTTCAGTCAACCTCAGCGGCATAGCGGTCTGGTACTGTTGACGCTTGA
AATGGCGGGGCATTTTTCAGCCGGATCGTGTTTGCTTCAGAGAAGCTCAA
GTTTATCTACGAACACGGGCAATGAATGCGTGCTTTTTTGCCGGACAGGC
CCAGATATCGCACGAAAAGCAGGCCGCAAGCGTCTCTGCCAGAGAGCTGG
AAAAGAAGATATCCCTTTCCACCATCGCTTACCAAGGGTTGGAAGAATCC
CTCCATCAGGCCGAGGCCGCAAAGCTTGAAGCTCAAGACAAGGGCGCGGA
GCTTTTGCGAGAGGCAGCAAGGACGGCGGCAGAGATGAGTGAGGTACGGT
TAGCGATGGCCACGGCGCTGGAGGAATCACGGGCGGAGAAACATAATAGA
GAGGCGCTGCAGGCAGACCTGGCGGTCCTCCGCGAGAAGTATAGTGCTCT
CAAAAGACGTTTCGTCGACGCGGGGAAAAAGGTGCGCATGCACAATAGCA
GTAGTCCGTGGAGGGGAGAATGTCGACGGTCTACAATACGCAGAAGTGGT
TCGTTGTGGAGGCGTGTGTCGGTGTCATATCAAGTAGTCTGAGTCTGTCT
CCAAGAAGGAAGATCAAGACTTCGTCGCCTCGTGCGTTCATTATTTTTGC
GCTGCTGGCATTAGTGTCCCCCCCCCCAATACCCGCGTATGCTGCGATGT
CAACAAGTAGTCGCGACCAATGGTGAGTTCGTGCTGGAGGCGGTGGATTT
AGGGGCAGACTGAAACCGATTCGCGCTCGAAAATTAGATGAGTGATGCTC
TCGACATGGCATCCATGTTGTGGAACAAACGAATTTAATTCATTGGAGAA
GAAGGAAAAAGCGGATATCACGGATGGCTCAAGCAGGCCTTCAACGTGTA
CAGCTACAGCTGTGGTATGCCTGATGACCCGCGTGAGGAAGAGGAAGGTG
TACGTGATTGTTGATTTCTTTGTTCTTTCAATCCCCGTAAAGTGTTGGAA
TGGTTCATTCCTCGCAGAATTTTCCGCGCTGAATGTGCGTGAGAGGTTTC
CGGGTGTGGAGCTTGGGTGGGAGGCCTGTGTGAAACCCGCGCGCAACCGA
ACGAACCATTTCTCACAGACAGTAAAACTCTATACGAACGCCTGTCTTGT
GGTAGCCCGGGATGCTTCGGTATTCAGCTTCTTATCGTTCGGCCTTTTCA
AAGGCCAGAGCGGGACTTCGACCTGCAAAAGTATTCCTAGAACAGCTTTA
CCGTCATATCCCTTCGAGGATTCCCATTACCCCCTACACAAACTTGACTT
ATCACCGCAACCAAAAAGGTGGAAGCCGTGCGGGCCGAACGAGACGCCTT
GCGCCGAGAGCGTGCAGTGCTAGAAGATAAACTAGCGGACGTGGAAAAGT
TCCAGAGCTCTAAACGAGGCCAAGCGTTAGATCGAATGGAGCAGGAACTG
GCCGCGGAGAGAATGGCGAGGGTGGAACTAGAGGCAGATCGGGACGATCT
GCAATCCCAATTGGCCGCCGCTCTTCACGCCACTGGGAGGACGTAAAATT
GGCAGAATTGTGATGCAATCTGGGTGTGTTGCCACTGCTGTTGCGTTATG
CTTCACAATGATTGCGACGGCTTGTGTTGAGTGAGCATATTAGTAAAGAG
ATAGTAGTGGGTGCTCAGGGCACACACCCCTCTGTAAATTTATTGTGAAA
ATACTTGTAGTCATCTGGCGTCTTGAATTCGCCGTCAGCACGAGGATCGT
GCCGCTGAAGGTCTCGGTAGCCCAGACGTGGAGCGTGGGTAAGCCTGGTC
ATCACCGACACCAAACGTCAACGTGTTGCGGCTGCCGAAAGTGCAGCCAG
CTCTGTTGTGGCGAAACAACCTTCCACGCACCGCGATGTAGAGAGCAAGA
GGTTTGGTGTATGATACGGAGGACCTGGTTGGAGGGTGAAATGTATATTG
GCATATTGGCGGCGGGATTGGCACGAGGTGATGACGTCACAGGTGAAGTG
AACTCAAACTTCAGCTCGTGTCTTATCCACCGTCGGGAATGAGAGGGCTC
CAAACATCCACCGCTTCGCGGATTAAATAACATTGGTAGGGCAGTTGTAC
GACGTGAGGGATGCCTCACACTCAGTTTGTGGTGAATGGAAACATCACGA
GATTCACGTGAAGGCCCTCTCGAATACCACGCTCACTAGCAGCAAGATGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig625:40470..43469+

>mRNA_P-littoralis_Contig625.22.2 ID=mRNA_P-littoralis_Contig625.22.2|Name=mRNA_P-littoralis_Contig625.22.2|organism=Pylaiella littoralis U1_48|type=CDS|length=948bp|location=Sequence derived from alignment at P-littoralis_Contig625:40470..43469+ (Pylaiella littoralis U1_48)
ATGCCTGCCGTAACCTCTGTCGAAAAAGCCAAACGGGTTCGGCGACGACA
GTCCCGTCTGAACATCAACGATGCGTTGAGTAGCATGGTTGATGTTCACG
ACGTCGCGTACTGGAGCCAATGGCGCCTCGCCATACACGGGGTGTGCGCC
CAGTTTGAAGCAGCAGCACAGGTCGAAGTGGATGCATGGTCTCGGGAGCG
AGTCGATCATGTCAGCATCTCAAGGCAGCAGGCTTTGAGCAGCGAAATTA
GACATCTCGAGGCCCAGCTTGGCAAGCACACGAGCATGAATGCCAAGCTG
GAGGCGGCGTCATTTGAGAACGCGGAGGCGCTGGCTAAGACGGAGTCGGC
ACGGGTAACCGCCGCAGCTGTTGTTACTCGATTACAGGCCCAGATATCGC
ACGAAAAGCAGGCCGCAAGCGTCTCTGCCAGAGAGCTGGAAAAGAAGATA
TCCCTTTCCACCATCGCTTACCAAGGGTTGGAAGAATCCCTCCATCAGGC
CGAGGCCGCAAAGCTTGAAGCTCAAGACAAGGGCGCGGAGCTTTTGCGAG
AGGCAGCAAGGACGGCGGCAGAGATGAGTGAGGTACGGTTAGCGATGGCC
ACGGCGCTGGAGGAATCACGGGCGGAGAAACATAATAGAGAGGCGCTGCA
GGCAGACCTGGCGGTCCTCCGCGAGAAGTATAGTGCTCTCAAAAGACGTT
TCGTCGACGCGGGGAAAAAGGTGGAAGCCGTGCGGGCCGAACGAGACGCC
TTGCGCCGAGAGCGTGCAGTGCTAGAAGATAAACTAGCGGACGTGGAAAA
GTTCCAGAGCTCTAAACGAGGCCAAGCGTTAGATCGAATGGAGCAGGAAC
TGGCCGCGGAGAGAATGGCGAGGGTGGAACTAGAGGCAGATCGGGACGAT
CTGCAATCCCAATTGGCCGCCGCTCTTCACGCCACTGGGAGGACGTAA
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