mRNA_P-littoralis_Contig625.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig625.16.1
Unique NamemRNA_P-littoralis_Contig625.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig625.16.1 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 1.060e-125
Identity = 186/198 (93.94%), Postives = 194/198 (97.98%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIKMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKEKAAAEADLTAVAPVLEQFGF 594
            MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIP+PYDKKKRMVVPNALQVI+MAPGRRFCVLGRLSEEVGWPH +LIKRLEAQRKIKSEAYYV+KK AKQLK+KA AEA+L AVAPVLE++GF
Sbjct:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 198
[Close]
BLAST of mRNA_P-littoralis_Contig625.16.1 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA)

HSP 1 Score: 289 bits (739), Expect = 2.660e-93
Identity = 141/197 (71.57%), Postives = 170/197 (86.29%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIKMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKEKAAAEADLTAVAPVLEQFG 591
            + E PV VDGRGHLLGRLAS+VAK+LL GQKV+VVR EQI ISGSLVRNKVKY Q++KKR NTNP RGP+HFRSPARIFWRT+RGM+P KT RG+ A+ARL  FEGIP+P+DK+KRMVVP AL+V+++APGR+ CVLGRLS EVGW HGDL++RLEA+RK++SEA+Y +KK   QL+ KA A ADL+AV PVLE +G
Sbjct:    2 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYG 198
[Close]
BLAST of mRNA_P-littoralis_Contig625.16.1 vs. uniprot
Match: A0A5J4Z3W8_PORPP (60S ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP)

HSP 1 Score: 258 bits (659), Expect = 2.930e-81
Identity = 128/197 (64.97%), Postives = 153/197 (77.66%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIKMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKEKAAAEADLTAVAPVLEQFG 591
            M+E+ V VD R HLLGRLAS+VAKELL GQKVVV RCE I +SG  +R K KY+ + +KR NTNP RGP+HFR+P+RIFWRTVRGMLP KT RG+EAL RL  FEGIP PYDK KRMVVP+AL+V+++AP R+ CVLGRLS EVGW + D++ RLE +RK+ S AYY  KK   +LK KA   ADL+ V PVLE FG
Sbjct:    1 MYESVVVVDARAHLLGRLASIVAKELLCGQKVVVTRCEAIEMSGRFIRKKNKYLMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFG 197
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BLAST of mRNA_P-littoralis_Contig625.16.1 vs. uniprot
Match: A0A7S0LS12_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS12_9EUKA)

HSP 1 Score: 257 bits (657), Expect = 5.110e-81
Identity = 127/183 (69.40%), Postives = 151/183 (82.51%), Query Frame = 1 
Query:   16 VTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIKMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKEKAAAEADLTA 564
            V +DG+GHLLGRL S++AK+LL G+KVVVVRCE + ISGSL RNKVKY Q+ KKR NTNP RGP+HFRSPARIFWRT+RGMLP KT RG+ ALARL+CFEGIP PYDKKKR+VVP+AL+ +++   R F VLG LS+EVGW + DL+ +LEAQRKIK +AYY EKK    LK KAAA ADL+A
Sbjct:   12 VVIDGKGHLLGRLCSIIAKQLLFGKKVVVVRCEALIISGSLTRNKVKYAQFMKKRMNTNPNRGPFHFRSPARIFWRTLRGMLPHKTVRGQSALARLACFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQVALKSKAAASADLSA 194
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BLAST of mRNA_P-littoralis_Contig625.16.1 vs. uniprot
Match: W7TSL6_9STRA (60s ribosomal protein l13a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSL6_9STRA)

HSP 1 Score: 258 bits (658), Expect = 6.850e-81
Identity = 129/196 (65.82%), Postives = 161/196 (82.14%), Query Frame = 1 
Query:   16 VTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIKMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKG---AKQLKEKAAAEADLTAVAPVLEQFGF 594
            V +DGRGHLLGRL+S+VAKELL GQKVVVVRCE++ ISG LVRN  +YMQ+ +KR NTNPKRGP+H+R+P+RI WRT+RGMLP KT RG +ALARL+ FEGIP+PYD KKR+VVP AL+++++ PGRRFC L RL+ EVGW H DL+ RLEA+RKIK+EAYY +KK    AK L E+ AA ++L+AV  VL  FG+
Sbjct:    8 VVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAA-SELSAVNNVLAGFGY 202
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BLAST of mRNA_P-littoralis_Contig625.16.1 vs. uniprot
Match: F0Y3B4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3B4_AURAN)

HSP 1 Score: 255 bits (652), Expect = 3.420e-80
Identity = 128/197 (64.97%), Postives = 154/197 (78.17%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIKMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKEKAAAEADLTAVAPVLEQFG 591
            +F+  V VDGR H+LGRLAS++AKELL GQKVVVVRCEQ+ +SGSLVRNKVK+  + KKR NTNPKRGP H+RSPAR+ WRTVRGMLP KT RG++ALARL CFEG+P PYDK K+MVVP AL+V+++ PGRRF VL RL+ E GW H  LI ++E +R  +S  +Y  KK A  LK KA A ADL+ VA VLE FG
Sbjct:    2 VFQDSVLVDGRTHMLGRLASIIAKELLCGQKVVVVRCEQLCVSGSLVRNKVKFTAFLKKRTNTNPKRGPIHYRSPARMLWRTVRGMLPHKTHRGQQALARLQCFEGVPPPYDKMKKMVVPEALKVLRLKPGRRFTVLARLASEFGWKHEALIAKMEEKRVARSAEFYAAKKSATALKAKATAAADLSKVADVLEAFG 198
[Close]
BLAST of mRNA_P-littoralis_Contig625.16.1 vs. uniprot
Match: A0A6V1NQ00_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQ00_HETAK)

HSP 1 Score: 254 bits (648), Expect = 1.320e-79
Identity = 131/197 (66.50%), Postives = 157/197 (79.70%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIKMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKEKAAAEADLTAVAPVLEQFG 591
            MFE  V VDGRGHLLGRLAS+VAK+LL GQKVV+VR E+I +SGSL+R K ++ Q+ KKR NTNPKRGP HFRSPA+IFWRTVRGM+P KT RG  A+ARL CFEGIP P+DKKKRMVVP AL+V+++   R+   LG L+ EVGW    LI+RLEA+RKI+S+AYY++KK A  LK KAAAEADL+ VA VL   G
Sbjct:    1 MFEDTVVVDGRGHLLGRLASIVAKQLLCGQKVVLVRAEEIVMSGSLIRKKTQFAQWLKKRTNTNPKRGPIHFRSPAKIFWRTVRGMIPHKTVRGTAAMARLQCFEGIPHPWDKKKRMVVPEALKVLRLKAHRKNTKLGTLAGEVGWEKAGLIERLEAKRKIRSQAYYLKKKAAVVLKTKAAAEADLSPVAAVLAPLG 197
[Close]
BLAST of mRNA_P-littoralis_Contig625.16.1 vs. uniprot
Match: A0A7S2DZL3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZL3_9STRA)

HSP 1 Score: 254 bits (648), Expect = 1.410e-79
Identity = 128/200 (64.00%), Postives = 158/200 (79.00%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIKMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKEKA--AAEADLTAVAPVLEQFGF 594
            M E  + VDGR HLLGRLASVVAKELL GQKVV+VRC+Q+ ISGSLVRNKVKY Q++KKR NTNP +GPYHF+SPA++ WRT+RGM  +KTARG+EALARLS FEGIP PYDKKKR V+P AL+V+++ P R + VLG L+  VGW H DL+KRLE +RK+++ A+Y +KK   QL+EKA  AA  +L  V  VLE  G+
Sbjct:    1 MLENTIIVDGRDHLLGRLASVVAKELLSGQKVVIVRCDQVCISGSLVRNKVKYAQFRKKRMNTNPSKGPYHFKSPAKMVWRTIRGMCHQKTARGQEALARLSTFEGIPHPYDKKKRQVIPAALRVMRLKPSRNYTVLGELANAVGWKHQDLLKRLEDKRKVRAAAFYEKKKAKTQLREKAEKAAAGELAKVNEVLEASGY 200
[Close]
BLAST of mRNA_P-littoralis_Contig625.16.1 vs. uniprot
Match: A0A7S1TQI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQI9_9STRA)

HSP 1 Score: 253 bits (646), Expect = 2.730e-79
Identity = 126/199 (63.32%), Postives = 159/199 (79.90%), Query Frame = 1 
Query:    1 MFEAPVT-VDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIKMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKEKAAAEADLTAVAPVLEQFGF 594
            MF    T +D RGHLLGRLAS++AKELL GQKV VVRCE+I ++GSL+RNKVK+  Y++KRH TNPK+GP H+RSPAR+ WR VRGMLP KTARG+ ALARL+ FEGIP+PYDKKKR+VVP AL+V+++ PGR+F VL  L+ EVGW H DLI+RLE +RK++++A+Y +KK A   K  A A  DL+AV PVLE  G+
Sbjct:    1 MFSPNATLIDARGHLLGRLASIIAKELLCGQKVTVVRCEEICVTGSLLRNKVKWANYRRKRHLTNPKKGPIHYRSPARMLWRVVRGMLPHKTARGQAALARLATFEGIPAPYDKKKRVVVPEALKVLRLQPGRKFTVLKTLANEVGWKHKDLIERLENKRKLEAQAFYEKKKAAAAQKRAATAAVDLSAVTPVLEANGY 199
[Close]
BLAST of mRNA_P-littoralis_Contig625.16.1 vs. uniprot
Match: A0A7S1TDT8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT8_9RHOD)

HSP 1 Score: 250 bits (639), Expect = 2.980e-78
Identity = 122/198 (61.62%), Postives = 154/198 (77.78%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIKMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKEKAAAEADLTAVAPVLEQFGF 594
            MF  PV VDGRGHLLGRLAS VAKELL GQ+VVVVRCE I  SG  +RNK KY+ + +KR NTNP RGP HFRSP+++FWRTVRGMLP KT RG +ALARL  FEGIP+PYDK KRMVVPNAL+V+++ P R++C LGR++ EVGW + D++ RLEA+RK+ SEAYY +KK   +L+ +A A A +  +   L+ +G+
Sbjct:    1 MFSGPVVVDGRGHLLGRLASTVAKELLNGQQVVVVRCEDIDQSGKFIRNKNKYLIFLRKRMNTNPTRGPIHFRSPSKMFWRTVRGMLPHKTQRGADALARLKVFEGIPAPYDKTKRMVVPNALRVLRLRPDRKYCRLGRIASEVGWKYADVVDRLEAKRKVSSEAYYEKKKAEGKLRVQAKANAAIQEMETKLQNYGY 198
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig625.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W9_ECTSI1.060e-12593.9460S ribosomal protein L13a n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z9N1_9STRA2.660e-9371.5760S ribosomal protein L13a n=1 Tax=Tribonema minus... [more]
A0A5J4Z3W8_PORPP2.930e-8164.9760S ribosomal protein L13a n=1 Tax=Porphyridium pu... [more]
A0A7S0LS12_9EUKA5.110e-8169.40Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
W7TSL6_9STRA6.850e-8165.8260s ribosomal protein l13a n=1 Tax=Nannochloropsis... [more]
F0Y3B4_AURAN3.420e-8064.97Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6V1NQ00_HETAK1.320e-7966.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DZL3_9STRA1.410e-7964.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1TQI9_9STRA2.730e-7963.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1TDT8_9RHOD2.980e-7861.62Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig625contigP-littoralis_Contig625:29281..35334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6W9
Preferred nameRPL13A
PFAMsRibosomal_L13
Model size1337
Max annot lvl2759|Eukaryota
KEGG rclassRC01978
KEGG koko:K02872,ko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,ko03010,map00785,map01100,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002237,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008407,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010243,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016477,GO:0017148,GO:0019222,GO:0019439,GO:0019538,GO:0022416,GO:0022625,GO:0022626,GO:0023052,GO:0030323,GO:0030324,GO:0030595,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0035295,GO:0040011,GO:0042221,GO:0042330,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045087,GO:0045184,GO:0045947,GO:0046483,GO:0046683,GO:0046700,GO:0046907,GO:0048246,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0050900,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051591,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060326,GO:0060425,GO:0060541,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070972,GO:0071214,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071493,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097452,GO:0097529,GO:0104004,GO:1901193,GO:1901194,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904688,GO:1904689,GO:1905517,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
Exons5
Evalue4.89e-130
EggNOG OGsCOG0102@1|root,KOG3204@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L13, eukaryotic/archaeal
Ec32 orthologEc-01_011950.1
EC2.8.1.8
DescriptionBelongs to the universal ribosomal protein uL13 family
Cds size597
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig625.16.1prot_P-littoralis_Contig625.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig625 29281..34594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791304.1505876-CDS-P-littoralis_Contig625:29280..294161680791304.1505876-CDS-P-littoralis_Contig625:29280..29416Pylaiella littoralis U1_48CDSP-littoralis_Contig625 29281..29416 +
1680791304.1695108-CDS-P-littoralis_Contig625:30142..302521680791304.1695108-CDS-P-littoralis_Contig625:30142..30252Pylaiella littoralis U1_48CDSP-littoralis_Contig625 30143..30252 +
1680791304.184917-CDS-P-littoralis_Contig625:32030..320901680791304.184917-CDS-P-littoralis_Contig625:32030..32090Pylaiella littoralis U1_48CDSP-littoralis_Contig625 32031..32090 +
1680791304.1988077-CDS-P-littoralis_Contig625:33187..333491680791304.1988077-CDS-P-littoralis_Contig625:33187..33349Pylaiella littoralis U1_48CDSP-littoralis_Contig625 33188..33349 +
1680791304.2098835-CDS-P-littoralis_Contig625:34465..345941680791304.2098835-CDS-P-littoralis_Contig625:34465..34594Pylaiella littoralis U1_48CDSP-littoralis_Contig625 34466..34594 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791304.2247856-UTR-P-littoralis_Contig625:34594..353341680791304.2247856-UTR-P-littoralis_Contig625:34594..35334Pylaiella littoralis U1_48UTRP-littoralis_Contig625 34595..35334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig625.16.1

>prot_P-littoralis_Contig625.16.1 ID=prot_P-littoralis_Contig625.16.1|Name=mRNA_P-littoralis_Contig625.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=199bp
MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNK
VKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALAR
LSCFEGIPSPYDKKKRMVVPNALQVIKMAPGRRFCVLGRLSEEVGWPHGD
LIKRLEAQRKIKSEAYYVEKKGAKQLKEKAAAEADLTAVAPVLEQFGF*
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mRNA from alignment at P-littoralis_Contig625:29281..35334+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig625.16.1 ID=mRNA_P-littoralis_Contig625.16.1|Name=mRNA_P-littoralis_Contig625.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6054bp|location=Sequence derived from alignment at P-littoralis_Contig625:29281..35334+ (Pylaiella littoralis U1_48)
ATGTTCGAGGCACCGGTTACCGTAGATGGCCGCGGCCACCTGCTCGGGCG
CCTGGCGTCTGTTGTAGCGAAGGAGCTGCTTGGCGGCCAGAAGGTGGTCG
TCGTGCGATGCGAGCAGATCACCATCAGCGGCTCTCGTGAGTACTGTTTT
GCCCGCCCCTCTCTGTCGGAGCGCACCGCATACGAGTACTCGTTCCCCAA
GCGGCATGCCCGCCATTGCCTTTTACCTCACTGTCGCTGCCTGGCTAACA
TCATGCATCCCGAACAGGAAAGTGCATGAGGACTTGGATTGTAGTGCCTT
GCCTCAGCGGAAAGTTTTAGCAAAGTGAACGTAGTTTGGTGTCTTGAGTA
CCGTAAACTGGCGGAAGACATCAAGACGAGAGAATGGCAGAGGGTGTGGT
TCCTGGCGACCAGGGGATGATTCGAGGTTGCCACACTGGCCGGAGAATGC
CGAGACGTTTTTGCACAGCACCAGCATCAGCCACGTTGAAAGTTGCCGTA
ATTCAATTGTGGGATGGTGGGATGGAACTCAGGCGAGGTTTTGTGACCAT
TCCGTAGTGTGCTGGGAGATATGACAGCAAGCCTCGCGAACAGATTTTCC
AGGTCAACCCTTTCCTGTGTACCTGTACTTCGGTATCGAACAATATGATA
CTTCGAAATACTTTTTAGGGCAACACAAGAAGCAACGAGCAGTTTGCAGC
TGGGGTGCTGCCGTTATCATGTGTTCGCGTACCCTCGTACATCATGGCAA
CCAATAATATATGTCGTTGCAGCAGGTGGCGTTGTGTCGCACAGGTCGCA
CGCAGGTCAACCCCCCTCGCATCCCCTTCCTCATCCTGTGCTTTCTCTCT
TTTCTCCCCCAGTGGTCCGGAACAAGGTGAAGTACATGCAGTACAAGAAG
AAGAGGCACAACACCAACCCGAAGCGCGGGCCGTACCACTTCCGCTCGCC
TGCCCGCATCTTCTGGCGGACGGTAAGCTTTGCTTATACTGCCATATTGT
TGGCGGTACATCAAACGCGTGTGATAGGTTGGCCGCAGCTGACAGCTGTG
GTGGGTTTGTCAAACTGCTGTACCAGGCATTGTGTACCAGCATTCCATAG
CAGTATTATACGAAGCCCGATACAGCTACATTCATCCTTTTGCACCATAT
CGTATACTCCGAGTATACCATAACACATCTGGGGTACATCCAGCATGTAG
TCCATGTTCGGTGCGACGGATACGCGATGGCAGCTTACTTGGATTTTTTT
TCTATCACCCTAAGCTGCCCAACAGCACCACTGTGTTGCCCAAGACGAAA
CACGACCCGGTTTTAAAGCGCCTTTCCAGGAGGAACCTGCTTGCTCTCGT
TGTCCAACGGAGGGCTGCAGTTGAGCAGTGCCCCCGGTGAGGTTCCGTCG
ACCATGTCCGGTGTTGTCACCCCCACAACCGTCTTCGGCGAGATCTAAGA
TTCGTATCATGTACATTTTCTCGTGCGGATCATATCAACGTGTTTGGGCA
TCGAAAGCGCCTGAAGAACAAAGTACTGTCGTGTCCCGGTTTACCGGCCT
CCAGTTTACCGGTTCGCCCTGTTTACCAAGTTTTTTCTCGTGCCACCTCG
TCACCCCAGTCTACCGGTCGTATGCCGGTATACCGGGGTGGTCCATTTCT
TCATACCTGTGGATCCCCTCCTGCTGCTGCACACTCACACACACGCTGCT
GCAAACAACACAACACAACACAACACGCTGGGTGTTGCGGGCAGCAGTCA
ACACTTACCTACACACCATGCCAGCAGTATAGCAGGAACACGGCCAAGTA
GAGAAAGACAGCAGTAGCCGCTGCTGTACTGCGTAGTGGGGGTGTTCATG
AGACGATGAGTTCGTGTGTCACATCTTATGGTTAGTGTGTCATGCAATGG
ATCTGGTGATAAACAATCATGAGCATTTAGTGTTTTTGGAACTGTTTCAA
TCGAGTGCAGTCCTGATGGTGCACTTCAAGCACTGCAGTCGTAACTGACC
TGCTGCCTTCAATGTATAGCAGTATTGTACACTCGTGCACCAATAACACT
GTAGTTGCAGGCTACCCCAACAGCAGGAGAAACACAGACACGCCATATCG
AAGGCTGTGTACCGTAATCATGCGAGTCATCGCACCCCCGTGTTAGCTTT
TTTGCATTCCGTATTGCTCCACAACCAGGAGAGTACCACTGCCGAAAAGG
GTGGTTTTGGAAAGATCTCGCCGAGAGCTTTCGTATGACGGGTCGTTTGG
TGTTCGCACTCTCCTGGTTGTGGAGCAATACGGAATGCAAAAAAGCTAAC
ACGGGGGTGCGATGACTCGCATGATTACGGTAGATACATCTGCTCTTCTT
GTGCATGTGCGGTCGTTTTCCCCCGTTTACCGGCATGCACCGGTAAAAAG
GTGCTTGTTTACCGGTACATGCCGGTTTACTGGTTTACAGATTTGCCCTG
TTCACCGGTTCTTTTTTTTCTTGCCACTACTGTAGGGGCCGGTAAACCGG
GACATCGACTGTGCTTTCTCTTCATGGTGAGAATCCGACTCAATATCACT
GTTGCGAGTGAGCTGTTTGCCTGTGCCGTCTGTCCAGCCTCGTGGTATTC
CATATGAGTATCACAGGACGTGATACAGATCAATTACGCTTTTTCGTTTC
CTACCCCCAATGTCAATGGTGCACGCGATACATATCATGACGTGTGTACC
CCCTGTAATGGCTCTGCGATGGCTGTGTCTCGCGTTTCTATGCACCCCAG
GTGAGGGGCATGCTTCCCCGCAAGACGGCCAGGGGCGAGGAGGCGCTCGC
GCGTCTTTCGGTAAGTGCCGTTCTCGATGGGCAGAGAACAGGGAGATGTT
AGCGTACATGATGCCACAGGCGTTTGTTACCTGTCTTGAACGATAATCTG
ACTGTACACATAATATACTTGGAAGTACTCGGAGCAGTGCTATGACACCA
TTGTTTTGAACTGCTCGCAGTGGCGTCCCCCATCTCTTCACCGGCGGGGG
CAACAAGAGGTTCATGATGGTTATTTGTTTCCTCCAAAAATATGACCTGA
CTGTACAAACATGCACTTTTATGGCACCACTGTTGAAGTACCCACAGTTA
CACAGCAGTGCGTGTCCCCATCTCGTCTCCTGGTGGACAACAGAATAAGC
GCAGATACCGTCCTGAGTTCTGCGGTCCACGGCGAATGTCTAGAAGTGGT
ACGTAGATCCTGCCGCAGGCTACCCTCCCACGATTTTTTCGGTATTCTGA
CATTGTTACGAACAATCCCCGACGTACGGATACCGTGGTGATTTCTGCGG
TCCACTACGAATGTCTGGAAGTGACTAATATCCTGCCTGAATCTACCCTC
CAAGGTTCTTTCAGTATGCGGACGTGATTGGCCAATACCGGTAGTCCTTC
GGCGGCGACGCGGAGAACCAAGTCAGAATCGTAGCCGACGGAGGAAAATA
TTGACAAACCACTCAGTATACCTGAGCATTGGAGGTTAGCCTGCGACAAA
ATCTACGGTCAAATCTAGACATTTGTGATGAATCGCAAAACCCACGCGGT
ATCTGTGCTGCCAATACCGCAGGGAACTCCTCGTACACCATGTCAGTGAA
CTAAAAGAGACTTTTAAGGTTAGCATGCGACAGGGTCTGCGTTCACTTGA
AGACATTCGTGATGGACCGCAGAGCGCACGACGGTATCTGTACTGTTGGT
GCCCCCATGGGGATAAAGATGACACTGCTGTCAGTTCCCCACACTTTCTG
GGTATCAATTTGGATAGATGTTCATGTAATTGATTCACGCGAAAGAAGTA
TTGAACTAAGAGGTTCTGCCCCTTGTTGCCTAATCTACACCCCCTCCGCC
TAACGCCGTCCTGAACATGTGCTCCTGCTCTACCATCTTTCTGCCCCCGA
TTTGCAGTGCTTCGAGGGCATCCCGTCCCCCTACGACAAGAAGAAGCGTA
TGGTGGTGCCCAACGCTCTTCAGGTGATCAAGATGGCGCCCGGCCGCCGG
TTCTGCGTGCTCGGACGCCTCTCGGAGGAGGTTGGCTGGCCGCACGGAGA
CCTGATCAAGCGCCTGGAGGTAAGAGCATTCAATAGCATGTGGTTGTGTC
TAGTGTCAGCCTTCCCATTCGCTGTGTGTTTGTCACGCCATGCGTTGTCT
CTCATGCGGCGTGTACTTACATTGTATGATGTATGATCATTGACGCCGTT
CCGTCGCTCAGACAGTGGTGGTTTTTCTTAAGTTTGCAGGTGTCTAGGCA
CGCACCCGGCGCTTCTCATGGAGTACTTGGAGTCGGAAGCGTTACGAACC
AGGATTGATTTGTTCGGCGTTTGCGTGGTCTGGGTACATCTTTTTTTGCT
GTTTGGCGTTGTCATCTTGAAATCAGACGACACCCATGTACTCCACACTC
TTGACACTTTTTCCCTTTGCACCCCGTGCGATTCTTCTCTGTGCCGAGTC
CACAATTTGGTTCAGCGCATAGTGTAGGGGGTATTTAGGGTCGAGGTGTT
GTCGTGATTCTGTACAAATAGGTCTGGTCGAGCTGCAATTTCCTTGTGTG
GGGCGATATTCGAGCGGTTGCGTCCGCATGGCGCGTACGCGCTTCCACTG
CTGTCCTCTTGCAGCCACAACCGAGAGGTGGTTGCCGATGCTCATGTTGG
TGGCTTTGAAGCGTAAGGCGAGGCGGAAATTGACGGGCCAATGTCAAGTT
TGCTTCACCTCGTGTTTTGCTCTACGTTCGACTTCTCAGGTGTAGACCTT
GGTGTTTACAAGACCTGCAAAGACTCACGCCCTCACATGCATCGTCGCGT
GCTTAAGTTGAAGTCCGTGTTGTGAGATTAAATACATTTTTACGCTCGGG
AATTGTGAGAGCCGGTGTGCGAAACATGCGTCACAATTCTGGCCAGCTTT
CGAGCTTCGCTTGTCTACTGATTTTTTGCATGAAAAGTCGCCGTCGTTTG
AAGTATTTTTCTTTCTACGAGATGAACATGGGTTGTCAAAGTTCGCTTCA
TGCGTATATTCTCTTTTTTTTTTTTTTTAATTTCAGGCCATGGAGTGGCA
TTAGAAGCACCATTTCTCGCTACCTTACCTCCTGGTCCGAGATCGGCGCG
GTTTGAAGTGATCTTCACTCCACCGAAAAATTCTGACGTATTCCCTCCTC
GCCTCCTACCCTCAAACGTCAAATCTCACTTTCAGGCCCAGCGCAAGATC
AAGTCTGAGGCGTACTACGTGGAGAAGAAGGGAGCCAAGCAGCTCAAGGA
GAAGGCCGCGGCAGAGGCAGACTTGACTGCCGTCGCACCCGTGCTTGAGC
AGTTCGGCTTCTAACTCGATTGCTGTACCGTAACCTCGCAGTAGCTCCAG
ATTCGTTTGATTCGTTGCGCCTCTGGCCGCCGCCGGCAGCTTGCAGTTTG
TTCGCACTCTGGCTTGGTTTTTTCCGCGTCTAGCGGGTGAGGGGCTAAAT
GTGGCTGGGATTTTCTCTACCTCTGGTCTCTGGTTTGTCAGTCGATGAGT
TGATCTGTATAGACCTTGCTGTTGGAGTCCCTGAAGTGCGTACTATGGAC
GGCTGTCAGCGAACGAAGAACCCAGGGCGGTAGCCACGTAGACTCGGAGG
AGTTTCGGGAGTCTGGAGGATATCCTCTCGAATTTTGCTACCGCGTTGGT
TTCACCCCCGGTCAGGTGTGGCGGAATAAATAATGAGGCTTCACGTGTTT
TTGGCTCTCGGTCTTGTCCTTTTTGCGAACATGCCGCACCTTTTGTGAGG
TACTTGGCTTTTTAGCTCTGCCGTTCGCGGACACGACCTCACGACAGCGA
CAAAAAATCCGCGTCAGTTTGTTGTCCGATAGTTGTGCCGAGGGTGATGA
ACTCTTCGTGCGCGAGGCGGAGGGCGCAAAAGTACGTCAAACTGTGCGCG
ATGTCCCGTTTCAATCGCTACGGCATCGTATCCCCTCGAGAGGAGAGTCT
GGATGCCTCCACAGCACTTGCATCACTGGATGCTATCGACGTCCCCTTAC
TTTACTGCAGTAGTTTCAACAAGCACATGGGGCTACATAAATTTTCCTGT
CCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig625:29281..35334+

>mRNA_P-littoralis_Contig625.16.1 ID=mRNA_P-littoralis_Contig625.16.1|Name=mRNA_P-littoralis_Contig625.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=597bp|location=Sequence derived from alignment at P-littoralis_Contig625:29281..35334+ (Pylaiella littoralis U1_48)
ATGTTCGAGGCACCGGTTACCGTAGATGGCCGCGGCCACCTGCTCGGGCG
CCTGGCGTCTGTTGTAGCGAAGGAGCTGCTTGGCGGCCAGAAGGTGGTCG
TCGTGCGATGCGAGCAGATCACCATCAGCGGCTCTCTGGTCCGGAACAAG
GTGAAGTACATGCAGTACAAGAAGAAGAGGCACAACACCAACCCGAAGCG
CGGGCCGTACCACTTCCGCTCGCCTGCCCGCATCTTCTGGCGGACGGTGA
GGGGCATGCTTCCCCGCAAGACGGCCAGGGGCGAGGAGGCGCTCGCGCGT
CTTTCGTGCTTCGAGGGCATCCCGTCCCCCTACGACAAGAAGAAGCGTAT
GGTGGTGCCCAACGCTCTTCAGGTGATCAAGATGGCGCCCGGCCGCCGGT
TCTGCGTGCTCGGACGCCTCTCGGAGGAGGTTGGCTGGCCGCACGGAGAC
CTGATCAAGCGCCTGGAGGCCCAGCGCAAGATCAAGTCTGAGGCGTACTA
CGTGGAGAAGAAGGGAGCCAAGCAGCTCAAGGAGAAGGCCGCGGCAGAGG
CAGACTTGACTGCCGTCGCACCCGTGCTTGAGCAGTTCGGCTTCTAA
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