mRNA_P-littoralis_Contig625.15.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig625.15.2
Unique NamemRNA_P-littoralis_Contig625.15.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 417 bits (1073), Expect = 7.050e-140
Identity = 209/248 (84.27%), Postives = 222/248 (89.52%), Query Frame = 2
Query:   32 MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAKALQEKAQAAEGVGVAEGDRDARAALKLSMDNILMGLVEKYIDGDGEGEAG-----RGVKRKVGGAATAASSANAS 760
            MEFPGA EDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDKACNNEQCRMQ VDP+EGLLNLTGLEFML +LPPEMSFL PGQPAP GPQPRRLFVIKKQVRKS +SVEVQAIYY+MEGVIYQ PTVQKLIKSRLNKFTHHLNNAFVELSKL+ L DS GGYDW WQKEAK LQEKA+AAEGVGVAE DRDA+AALKLSMDNILMGLVEKYIDGDGEG+ G     RG KRK  G A  ++S +A+
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEAVTSASLDAA 248          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 7.190e-92
Identity = 138/150 (92.00%), Postives = 143/150 (95.33%), Query Frame = 2
Query:   32 MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVE 481
            M+FPGA EDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDP+EGLLNLTGLEFML +LPPEMSFL PGQPAP GPQPRRLFVIKKQVRKS +SVEVQAIYY+MEGVIYQ PTVQKLIKSRLNKFTHHLNNAF E
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGE 150          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.940e-45
Identity = 97/216 (44.91%), Postives = 126/216 (58.33%), Query Frame = 2
Query:   53 EDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGV-DPKEGLLNLTGLEFMLEDLPPEMSFL-QPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAKALQEKAQAAEGVGVAEGDRDAR-AALKLSMDNILMGLVEKYIDGDGEG 691
            ED  Q SF D +WL+ + LGPE A+DYFALSPFYD+  NNE CRMQG+ D    +  +TG+E+++E+LPPE   L +PG P    PQPR L VIKKQ RKS+T  EV+ +YY+M+G IYQ P+   LI SRL K    L+ +F  L  L   N + G YDW W  EA                     A  +A++   D IL+ LV +Y   +GEG
Sbjct:   16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPAHN-ARGAYDWPWNAEAXXXXXXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A2R5GW25_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA)

HSP 1 Score: 126 bits (316), Expect = 7.950e-29
Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 2
Query:   71 SFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSF-LQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAKALQEKAQAAEG 583
            SF+D  W++ +GL   N LDYFA SPFYD +CNNE  RMQ +          GLE ML D+PP + + L P    PV      LF++ KQ R S+T V  QA+YY+++ VIYQ P++Q+LI +RL+K T+HL NAF ++ K +    S G   +TW  +  A +   Q+AEG
Sbjct:   65 SFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEYRLLPSGHEPV------LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARYAPSQG---FTWHFDGDAHRAWRQSAEG 216          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 118 bits (296), Expect = 2.520e-26
Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 2
Query:   47 APEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAK 550
            A  D    SF D VWLQ + L P+  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L  LP     L           P++L+VI+KQ R SRT VE  A+YYV++G +YQ P +  ++ SRL K ++ +N AF  L+     + + G Y W +  + K
Sbjct:    5 AHADDYNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYEL--LPNAAKQL-----------PQQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG-YAWDFSSKDK 157          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 114 bits (285), Expect = 5.490e-25
Identity = 66/167 (39.52%), Postives = 93/167 (55.69%), Query Frame = 2
Query:   56 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAK 550
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L              P      P++LF+I+KQ R  RT VE  AIYYV++G +YQ P +  ++ SRL K ++ +N AF  L+     + + G Y W +  + K
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYEL-------------LPNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAWDFSSKDK 157          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 111 bits (278), Expect = 5.710e-25
Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = 2
Query:   32 MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELS 487
            ME  G  +D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L  LP     L           P++L++I+KQ R  RT VE  AIYYV++G +YQ P +  ++ SRL K ++ +N AF  L+
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYEL--LPNAAKQL-----------PQQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLA 137          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 112 bits (279), Expect = 6.880e-25
Identity = 64/158 (40.51%), Postives = 91/158 (57.59%), Query Frame = 2
Query:   56 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDW 529
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ +   E L NL G+E+ L  LP     L           P++L++I+KQ R  RT VE  A+YYV++G +YQ P +  ++ SRL K ++ +N AF  L+     + + G Y W
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYEL--LPNAAKQL-----------PQQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A8K1CUM6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUM6_PYTOL)

HSP 1 Score: 111 bits (277), Expect = 9.010e-24
Identity = 65/165 (39.39%), Postives = 94/165 (56.97%), Query Frame = 2
Query:   56 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKE 544
            D    SF D +WLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L N+ G+E+ L  LP     L           P++LF+I+KQ R  RT V+  A+YYV++G +YQ P +  ++ SRL K +H +N AF  L+     + + G Y W +  E
Sbjct:    8 DDYNASFHDTIWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEYEL--LPNAAKQL-----------PQQLFLIQKQRRLGRTQVKPLAVYYVLDGRVYQAPNIHAMLTSRLKKCSHRVNKAFHALAAGVRFSPTEG-YAWDFSSE 155          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: K3WSB9_GLOUD (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB9_GLOUD)

HSP 1 Score: 111 bits (277), Expect = 1.030e-23
Identity = 65/167 (38.92%), Postives = 95/167 (56.89%), Query Frame = 2
Query:   56 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAK 550
            D    SF D +WLQ + L  +  + YFALSPFYD++CNNE+ +MQ  G+D    L N+ G+E+  E LP     L           P++LF+I+KQ R  RT VE  AIYYV++G +YQ P +  ++ SRL K ++ +N AF  L+     + + G Y W +  + K
Sbjct:    8 DDYNASFRDTMWLQSFPLNAQTVIHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEY--EVLPNTAKQL-----------PQQLFLIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHTLAAGVRFSPTEG-YAWDFSSKDK 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKW4_9PHAE7.050e-14084.27Mediator of RNA polymerase II transcription subuni... [more]
D7G6X0_ECTSI7.190e-9292.00Mediator of RNA polymerase II transcription subuni... [more]
A0A835YVL9_9STRA1.940e-4544.91Mediator of RNA polymerase II transcription subuni... [more]
A0A2R5GW25_9STRA7.950e-2943.60Mediator of RNA polymerase II transcription subuni... [more]
M4C4K5_HYAAE2.520e-2641.18Mediator of RNA polymerase II transcription subuni... [more]
D0NQQ4_PHYIT5.490e-2539.52Mediator of RNA polymerase II transcription subuni... [more]
A0A0N7L744_PLAHL5.710e-2542.86Mediator of RNA polymerase II transcription subuni... [more]
A0A484EGT8_BRELC6.880e-2540.51Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CUM6_PYTOL9.010e-2439.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WSB9_GLOUD1.030e-2338.92Mediator of RNA polymerase II transcription subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig625contigP-littoralis_Contig625:25574..29071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6X0
Preferred nameMED6
PFAMsMed6
Model size1892
Max annot lvl2759|Eukaryota
KEGG koko:K01530,ko:K15128
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000428,GO:0001128,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007406,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0016043,GO:0016070,GO:0016567,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0022008,GO:0022607,GO:0030154,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051123,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0055029,GO:0060255,GO:0060284,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070847,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0072091,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
Exons5
Evalue1.45e-97
EggNOG OGsCOG5097@1|root,KOG3169@2759|Eukaryota
Ec32 ortholog descriptionMediator complex, subunit Med6
Ec32 orthologEc-01_011940.1
EC3.6.3.1
DescriptionRNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
Cds size867
COG categoryK
BRITEko00000,ko01000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig625.15.2prot_P-littoralis_Contig625.15.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig625 26568..29040 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791304.0416567-UTR-P-littoralis_Contig625:25573..265671680791304.0416567-UTR-P-littoralis_Contig625:25573..26567Pylaiella littoralis U1_48UTRP-littoralis_Contig625 25574..26567 -
1680791304.1150622-UTR-P-littoralis_Contig625:29040..290711680791304.1150622-UTR-P-littoralis_Contig625:29040..29071Pylaiella littoralis U1_48UTRP-littoralis_Contig625 29041..29071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791304.054151-CDS-P-littoralis_Contig625:26567..268131680791304.054151-CDS-P-littoralis_Contig625:26567..26813Pylaiella littoralis U1_48CDSP-littoralis_Contig625 26568..26813 -
1680791304.0667152-CDS-P-littoralis_Contig625:27081..272571680791304.0667152-CDS-P-littoralis_Contig625:27081..27257Pylaiella littoralis U1_48CDSP-littoralis_Contig625 27082..27257 -
1680791304.0776045-CDS-P-littoralis_Contig625:27617..277621680791304.0776045-CDS-P-littoralis_Contig625:27617..27762Pylaiella littoralis U1_48CDSP-littoralis_Contig625 27618..27762 -
1680791304.0890515-CDS-P-littoralis_Contig625:28052..281491680791304.0890515-CDS-P-littoralis_Contig625:28052..28149Pylaiella littoralis U1_48CDSP-littoralis_Contig625 28053..28149 -
1680791304.100822-CDS-P-littoralis_Contig625:28837..290401680791304.100822-CDS-P-littoralis_Contig625:28837..29040Pylaiella littoralis U1_48CDSP-littoralis_Contig625 28838..29040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig625.15.2

>prot_P-littoralis_Contig625.15.2 ID=prot_P-littoralis_Contig625.15.2|Name=mRNA_P-littoralis_Contig625.15.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=289bp
MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQC
RMQGVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIK
KQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVE
LSKLSTLNDSAGGYDWTWQKEAKALQEKAQAAEGVGVAEGDRDARAALKL
SMDNILMGLVEKYIDGDGEGEAGRGVKRKVGGAATAASSANASRSAAAAV
GAASSSSSAAVLGAPTVGSSAPIKNEATTIAAPTNPAR*
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mRNA from alignment at P-littoralis_Contig625:25574..29071-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig625.15.2 ID=mRNA_P-littoralis_Contig625.15.2|Name=mRNA_P-littoralis_Contig625.15.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3498bp|location=Sequence derived from alignment at P-littoralis_Contig625:25574..29071- (Pylaiella littoralis U1_48)
CGTGGTGGGAAGTCATCAAAGGACAACCGAAATGGAATTCCCCGGAGCAC CAGAAGATCCGGAGCAACGATCATTTATCGACCCTGTGTGGCTGCAGCAG TGGGGACTTGGTCCGGAGAATGCTTTGGACTACTTTGCTCTTAGTCCATT CTACGACAAGGCATGCAATAACGAGCAGTGCCGAATGCAGGGCGTGGATC CCAAAGAGGGACTCTTGAATCTCACCGGGCTAGAGTGAGTCATCGCTGCT CCTGCTGCTGCTGCGGGCGGCCGTATCGTAGGTATAGATCACTAATACTG CTCGACTTTGGAATCATGATTCACCCTATTGTTCCCCAAATCAAATCACA TCGCTGTGCAGCGAAGTATACTGAAGTATCTAGTCTCGCCCTTGGATTGA ACGACCCCGGAAACGAAATATCGTGCGACTGAGTGTTGCTGTTTATCCCG GTGCCGCCGCACGTCCATTGGGAGTTTCCTTGTAGGTTACATGTATGATA TGAGTGTTGTAAACTCCCCGAATACACCATACTTTATGGCCCGACCAGCT GTGGATCGTGGCAGTTGGCAAATCAACTGCCTGAAACCTCGCAGTATATC ACCCAAAAATCATCGCCGAGATCTCACACCCCTGGTACAATACCCTTGGA ACGCAATTCTTTTATCGTACACACCTGGTTCCATTGGCAAAGGAACAGCA GGTAGATCTTTCTCTGTTGTGGCGCATGAAAAGAACCCCATCAAGTCGGT CTAAATTCATGAGGACCTACAGGAAATCGATCAACGCGTCCAACAGAGGT CCACGGGTTGCTGGCGAGCCTGGCTCCTCCATGACAAAGTCGTAGCGACA CCCTTGCACACAAATCCTTCGAGTCTTACCCTCATAGTCCTCCGTGCCCA TCCATCCTCGGGTGATCGACAGGTTCATGCTCGAGGACCTTCCGCCGGAA ATGTCCTTCCTGCAGCCCGGCCAACCTGCCCCCGTCGGCCCTCAGCCTCG ACGCCTGTTCGTCATTAAGGTGTGAGAGGCTGCATAGCTCCACCCGACGC ACGGCGGCAAAAGAAGTAGACGGAGACACACACCTTCCGGATTTCTCTGT CTGCGATTCTGCCTTAATAGATGGTGTGTGCTGTGCATCGAGGCAAAAAA ACATGGTTTGTACCGCCCCAGAGTACAGAGATTTCCTGCACTATCCTCTC GATGGTGAAGGAGAATCATGCCATCCAGTGCACCGCTGTGATGCGCGCGG CGCTGCTTTGGAGCTCACAGCAGTGCACGAAAACGATCGCTAATTGCCCC GCGCACCAGAAACAAGTGCGCAAGAGCCGAACGTCCGTGGAGGTTCAGGC GATCTACTACGTGATGGAAGGCGTCATTTACCAGACCCCCACGGTGCAGA AGCTCATCAAGTCACGCCTCAACAAGTTCACGCACCATCTCAACAACGCT TTCGGTGAGACTCCCTCTGTCAGCGGTGGAATGGGTAAGGCTATCGGTCG ATTATGCCAGGGCGCAATGACTATTCAGCGTGCCGTATGTAGAAGGTTGA GTGATCAAAGTCCTTGGTTGTTGTCTAGAGGTTCATTTGCTGTGTGTGAA GAGAGCGACTGCCAACGGGAGTCAAGTTATCCGTATCCATCGTTCCGCGT CGCTTTGTACGCGCTCGCAATGCGTTGAGTGTAGGCGCCATCACGAACAA CGCCAGGCAGCGTAAGTCCGACGACCAGAACGCGGCGCACCTCCCATCCT CCTGGGTTCGCCCACTAACATGACGAAATTTCCAACTCCCCTTTTGCGTT GAAACTCCCACCAGTGGAGCTTTCAAAACTCTCGACACTGAATGACTCTG CCGGGGGCTACGACTGGACATGGCAGAAGGAGGCGAAAGCACTGCAAGAG AAGGCGCAGGCAGCAGAAGGTGTTGGGGTGGCCGAGGGGGACAGAGACGC AAGGGCGGCCCTAAAGCTGTCCATGGACAACATTCTCATGGTGAGCCTAG TCTGGAACCGGCTGGAGACAAGATTTTCTGTTCGCGTCGTGTTGTGTTGG GGCTGGTGCCGTGGGAGTCACAACTGATTTGTGCCCTCGTTCGCCATAAT TTCACGCACAGCTTTTTTTTAAAGGCCGGGCTCGCCCATTTTTGTCAGCA ATGGCGGTAGCGGTTCTGTGTTGTACCTTCGGAATGCTCTCCGTCATGGT TTCTCATCTTGGCCTCTTCTTAAATTTGCAACGGTGATGCCTCGCGTCCA AAAACTAGGGCCTGGTGGAAAAATACATCGATGGAGATGGAGAAGGCGAG GCCGGTCGAGGAGTGAAGCGGAAGGTGGGCGGTGCTGCCACCGCCGCGAG CTCAGCAAATGCTAGTAGAAGTGCAGCTGCTGCTGTTGGTGCTGCTAGCA GTAGTAGTAGTGCTGCTGTTCTAGGTGCTCCTACTGTTGGTAGCTCTGCG CCGATTAAGAACGAGGCTACAACAATCGCGGCACCGACAAACCCGGCCCG ATGACTGCCCGATTGGCACGTCCGTTCAGCGGGAATGCACGCCCAAGGGG TTCGTCCTCTCTCCCCCCTCGAACAAAACGTTTCTCTTTTGTGAGTGATT TCGGTGATTTCACAATGCGTTTCTATAATAGTGCTGCTTGTACAGTTCGT TCCTCGTTTTGTGTTTCTTATATGCTTTGGTCCCCCTCCCCGCACTCGTA CGGTATGTTGCGCTTCTCCGGTTGTGATGGATGACAGGCTCTCGTGCGAT GCTGTGATTCATTCGTTTGACATTCAGTGATGCTTTAGGGTAACAGGCGC AACAACGCCGTGGTGTATATTTGTGGTTGGGCTGACTCACTGCGTATCTA CTGTGATAAAATGTGACTCATCTTTTTGGGCTGAGGTTTCAGAATGTGCA TCGTGCACTGTTGTGAGAAAGTCAGCTACTGTCTACACTACTGCTGAGCT GCTGGAGGGACCCGATAGTACGCCCACGATGATCGCCACCTTTCGACTGC AGCAGATGCTCGCACCCAACCTGTGAGCTCCGTTCCTACGAGACAGCCAC GAAGTGCGCGGTGTCTGCGATGCCATCTTTCATGCGGTTGGCGTGTTTAC AGAAGTTTCGAGTTTGGAGCGAAGGAGGAGGGTGAACATCCAAGACACCG CTTTGAAGCGTCCTGAGACATGGTAGATACTGCGGGCCATAAACGTCCTC AGAATACATCACGTCCACGGTTTGTTTTCTTGCGGCAGGCGAAACGATGA ACAGGCCGAAGTGTACGTGGCAACCTTCGAAATTCAACCGGAAGCCGCTG CTGTGGGTACGCGAGTATGTGACGAGCGCATTGTCGTGCGGCTCCGGAGA CAGTGTGCGCGAAGTTTGGTAACAAGGGGCGGCTTGCAAAAATAACAGGC TTTCCTCGCTGCCTGTCGGAGGACAACCATACCCAAACCAATATTATACT TGAGGGGCGAGGGTGGGGGGAGACACTTTTGCAAGATTCAAAGAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig625:25574..29071-

>mRNA_P-littoralis_Contig625.15.2 ID=mRNA_P-littoralis_Contig625.15.2|Name=mRNA_P-littoralis_Contig625.15.2|organism=Pylaiella littoralis U1_48|type=CDS|length=867bp|location=Sequence derived from alignment at P-littoralis_Contig625:25574..29071- (Pylaiella littoralis U1_48)
ATGGAATTCCCCGGAGCACCAGAAGATCCGGAGCAACGATCATTTATCGA
CCCTGTGTGGCTGCAGCAGTGGGGACTTGGTCCGGAGAATGCTTTGGACT
ACTTTGCTCTTAGTCCATTCTACGACAAGGCATGCAATAACGAGCAGTGC
CGAATGCAGGGCGTGGATCCCAAAGAGGGACTCTTGAATCTCACCGGGCT
AGAGTTCATGCTCGAGGACCTTCCGCCGGAAATGTCCTTCCTGCAGCCCG
GCCAACCTGCCCCCGTCGGCCCTCAGCCTCGACGCCTGTTCGTCATTAAG
AAACAAGTGCGCAAGAGCCGAACGTCCGTGGAGGTTCAGGCGATCTACTA
CGTGATGGAAGGCGTCATTTACCAGACCCCCACGGTGCAGAAGCTCATCA
AGTCACGCCTCAACAAGTTCACGCACCATCTCAACAACGCTTTCGTGGAG
CTTTCAAAACTCTCGACACTGAATGACTCTGCCGGGGGCTACGACTGGAC
ATGGCAGAAGGAGGCGAAAGCACTGCAAGAGAAGGCGCAGGCAGCAGAAG
GTGTTGGGGTGGCCGAGGGGGACAGAGACGCAAGGGCGGCCCTAAAGCTG
TCCATGGACAACATTCTCATGGGCCTGGTGGAAAAATACATCGATGGAGA
TGGAGAAGGCGAGGCCGGTCGAGGAGTGAAGCGGAAGGTGGGCGGTGCTG
CCACCGCCGCGAGCTCAGCAAATGCTAGTAGAAGTGCAGCTGCTGCTGTT
GGTGCTGCTAGCAGTAGTAGTAGTGCTGCTGTTCTAGGTGCTCCTACTGT
TGGTAGCTCTGCGCCGATTAAGAACGAGGCTACAACAATCGCGGCACCGA
CAAACCCGGCCCGATGA
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