mRNA_P-littoralis_Contig625.15.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE) HSP 1 Score: 417 bits (1073), Expect = 7.050e-140 Identity = 209/248 (84.27%), Postives = 222/248 (89.52%), Query Frame = 2
Query: 32 MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAKALQEKAQAAEGVGVAEGDRDARAALKLSMDNILMGLVEKYIDGDGEGEAG-----RGVKRKVGGAATAASSANAS 760
MEFPGA EDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDKACNNEQCRMQ VDP+EGLLNLTGLEFML +LPPEMSFL PGQPAP GPQPRRLFVIKKQVRKS +SVEVQAIYY+MEGVIYQ PTVQKLIKSRLNKFTHHLNNAFVELSKL+ L DS GGYDW WQKEAK LQEKA+AAEGVGVAE DRDA+AALKLSMDNILMGLVEKYIDGDGEG+ G RG KRK G A ++S +A+
Sbjct: 1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEAVTSASLDAA 248
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI) HSP 1 Score: 290 bits (741), Expect = 7.190e-92 Identity = 138/150 (92.00%), Postives = 143/150 (95.33%), Query Frame = 2
Query: 32 MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVE 481
M+FPGA EDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDP+EGLLNLTGLEFML +LPPEMSFL PGQPAP GPQPRRLFVIKKQVRKS +SVEVQAIYY+MEGVIYQ PTVQKLIKSRLNKFTHHLNNAF E
Sbjct: 1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGE 150
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA) HSP 1 Score: 171 bits (434), Expect = 1.940e-45 Identity = 97/216 (44.91%), Postives = 126/216 (58.33%), Query Frame = 2
Query: 53 EDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGV-DPKEGLLNLTGLEFMLEDLPPEMSFL-QPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAKALQEKAQAAEGVGVAEGDRDAR-AALKLSMDNILMGLVEKYIDGDGEG 691
ED Q SF D +WL+ + LGPE A+DYFALSPFYD+ NNE CRMQG+ D + +TG+E+++E+LPPE L +PG P PQPR L VIKKQ RKS+T EV+ +YY+M+G IYQ P+ LI SRL K L+ +F L L N + G YDW W EA A +A++ D IL+ LV +Y +GEG
Sbjct: 16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPAHN-ARGAYDWPWNAEAXXXXXXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A2R5GW25_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA) HSP 1 Score: 126 bits (316), Expect = 7.950e-29 Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 2
Query: 71 SFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSF-LQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAKALQEKAQAAEG 583
SF+D W++ +GL N LDYFA SPFYD +CNNE RMQ + GLE ML D+PP + + L P PV LF++ KQ R S+T V QA+YY+++ VIYQ P++Q+LI +RL+K T+HL NAF ++ K + S G +TW + A + Q+AEG
Sbjct: 65 SFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEYRLLPSGHEPV------LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARYAPSQG---FTWHFDGDAHRAWRQSAEG 216
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE) HSP 1 Score: 118 bits (296), Expect = 2.520e-26 Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 2
Query: 47 APEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAK 550
A D SF D VWLQ + L P+ L YFALSPFYD++CNNE+ +MQ G+D L NL G+E+ L LP L P++L+VI+KQ R SRT VE A+YYV++G +YQ P + ++ SRL K ++ +N AF L+ + + G Y W + + K
Sbjct: 5 AHADDYNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYEL--LPNAAKQL-----------PQQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG-YAWDFSSKDK 157
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT) HSP 1 Score: 114 bits (285), Expect = 5.490e-25 Identity = 66/167 (39.52%), Postives = 93/167 (55.69%), Query Frame = 2
Query: 56 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAK 550
D SF D VWLQ + L + L YFALSPFYD++CNNE+ +MQ G+D L NL G+E+ L P P++LF+I+KQ R RT VE AIYYV++G +YQ P + ++ SRL K ++ +N AF L+ + + G Y W + + K
Sbjct: 8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYEL-------------LPNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAWDFSSKDK 157
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL) HSP 1 Score: 111 bits (278), Expect = 5.710e-25 Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = 2
Query: 32 MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELS 487
ME G +D SF D VWLQ + L + L YFALSPFYD++CNNE+ +MQ G+D L NL G+E+ L LP L P++L++I+KQ R RT VE AIYYV++G +YQ P + ++ SRL K ++ +N AF L+
Sbjct: 1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYEL--LPNAAKQL-----------PQQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLA 137
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC) HSP 1 Score: 112 bits (279), Expect = 6.880e-25 Identity = 64/158 (40.51%), Postives = 91/158 (57.59%), Query Frame = 2
Query: 56 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDW 529
D SF D VWLQ + L + L YFALSPFYD++CNNE+ +MQ + E L NL G+E+ L LP L P++L++I+KQ R RT VE A+YYV++G +YQ P + ++ SRL K ++ +N AF L+ + + G Y W
Sbjct: 8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYEL--LPNAAKQL-----------PQQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A8K1CUM6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUM6_PYTOL) HSP 1 Score: 111 bits (277), Expect = 9.010e-24 Identity = 65/165 (39.39%), Postives = 94/165 (56.97%), Query Frame = 2
Query: 56 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKE 544
D SF D +WLQ + L + L YFALSPFYD++CNNE+ +MQ G+D L N+ G+E+ L LP L P++LF+I+KQ R RT V+ A+YYV++G +YQ P + ++ SRL K +H +N AF L+ + + G Y W + E
Sbjct: 8 DDYNASFHDTIWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEYEL--LPNAAKQL-----------PQQLFLIQKQRRLGRTQVKPLAVYYVLDGRVYQAPNIHAMLTSRLKKCSHRVNKAFHALAAGVRFSPTEG-YAWDFSSE 155
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: K3WSB9_GLOUD (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB9_GLOUD) HSP 1 Score: 111 bits (277), Expect = 1.030e-23 Identity = 65/167 (38.92%), Postives = 95/167 (56.89%), Query Frame = 2
Query: 56 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAK 550
D SF D +WLQ + L + + YFALSPFYD++CNNE+ +MQ G+D L N+ G+E+ E LP L P++LF+I+KQ R RT VE AIYYV++G +YQ P + ++ SRL K ++ +N AF L+ + + G Y W + + K
Sbjct: 8 DDYNASFRDTMWLQSFPLNAQTVIHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEY--EVLPNTAKQL-----------PQQLFLIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHTLAAGVRFSPTEG-YAWDFSSKDK 157 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig625.15.2 >prot_P-littoralis_Contig625.15.2 ID=prot_P-littoralis_Contig625.15.2|Name=mRNA_P-littoralis_Contig625.15.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=289bp MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCback to top mRNA from alignment at P-littoralis_Contig625:25574..29071- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig625.15.2 ID=mRNA_P-littoralis_Contig625.15.2|Name=mRNA_P-littoralis_Contig625.15.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3498bp|location=Sequence derived from alignment at P-littoralis_Contig625:25574..29071- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig625:25574..29071- >mRNA_P-littoralis_Contig625.15.2 ID=mRNA_P-littoralis_Contig625.15.2|Name=mRNA_P-littoralis_Contig625.15.2|organism=Pylaiella littoralis U1_48|type=CDS|length=867bp|location=Sequence derived from alignment at P-littoralis_Contig625:25574..29071- (Pylaiella littoralis U1_48)back to top |