mRNA_P-littoralis_Contig625.14.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig625.14.1 vs. uniprot
Match: D7G6X1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X1_ECTSI) HSP 1 Score: 535 bits (1379), Expect = 1.830e-181 Identity = 334/479 (69.73%), Postives = 369/479 (77.04%), Query Frame = 2
Query: 59 RMVSDRCLGAALFCACSASVVLGFVPSAGTGCAGAVRSRQR-VEAGGTSMTP-PHTRHHRSFAGAPVIQGRTTAGTRRVGKNGRTGRRRSTSVQMVGFGETFFGVGGPEVAVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVTNLTSIVDDQIQNAEKIASGEKKPPDYFAPDEEFSMSDEEEFEDVTIDEYGRMVYDGQPEKPPPIRDEDRAPFWEGLGDKISEKISEFDTEKGPLKEASKFAQQLSGAVNEKVMGTETVDAP-----ADVGAGAAWEG-ADAATAAAASGAAGVGMPNGWKAPTSGLGMDKETQMANDVPSELDAARDTAPAGELLTIDEQFERLDSIAALEEERATMMQRLEAKIEAKIGNIKGELLELVDEDFQEKRAKINQEFAAKAEXXXXXXXXXXXXXXXXXXDEVAE----------------AETAVVPTGSGANKAPTERSTAATGIEMEEQ 1423
RM +R LG AL CACSA V LGFVP+ G AVRSR+ VE G TS+ + SFAGAPV+QGR AG RRVG+ GR GRR ++VQMVGF TFFGVGGPEV VVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTV NLT+IVDDQIQNAE+IASGEKKPPDYFAP+EEF MSDE+EFEDVTIDEYGRMVY+GQPEKPPPI+DEDRAPFWEGLGDKIS+K++EFD E+GPLKEASKFAQQLSGAVNEKVMG + AP +DVGAGAAWEG A+A AAGVGM NGWK PTS LGM++ ++ANDVPSELDA ++ EL TIDEQFERLD+IAALEEERA+ MQRLEAKIEAKIGNIK ELLELVDEDFQEKR KI+Q+FAA+AE XXXXXXXXXXXXXX AET N P ERSTAA GI+MEE+
Sbjct: 37 RMAPNRRLGVALACACSAGVALGFVPNVGNA---AVRSRRGGVEGGCTSIIGIGGASQYGSFAGAPVLQGRPAAGQRRVGRRGRHGRR--STVQMVGFDNTFFGVGGPEVVVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVNNLTTIVDDQIQNAEQIASGEKKPPDYFAPEEEFPMSDEDEFEDVTIDEYGRMVYEGQPEKPPPIKDEDRAPFWEGLGDKISDKLNEFDKEEGPLKEASKFAQQLSGAVNEKVMGIDRAAAPTDSSTSDVGAGAAWEGPAEAVAGXXXXXAAGVGMANGWKPPTSELGMEETVELANDVPSELDAPSGSSATSEL-TIDEQFERLDTIAALEEERASTMQRLEAKIEAKIGNIKNELLELVDEDFQEKRTKIDQQFAARAETKAAXXXXXXXXXXXXXXXXXXXXXVESAGXXXXXXXXXAETTPATAAPSPNATPPERSTAAAGIKMEEK 509
BLAST of mRNA_P-littoralis_Contig625.14.1 vs. uniprot
Match: A0A835Z5Z6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z6_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.400e-37 Identity = 116/304 (38.16%), Postives = 154/304 (50.66%), Query Frame = 2
Query: 341 GFGETFFGVGGPEVAVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVTNLTSIVDDQIQNAEKIASGEKKPPDYFAPDEEFSMSDEEEFEDVTIDEYGRMVYDGQPEKPPPIRDEDRAPFWEGLGDKISEKISEFDTEKGPLKEAS-----KFAQQLSGAVNEKVMGTETVDAPADVGAGAAWEGADAATAAAASGAAGVGMPNGWKAPTSGLGMDKETQMANDVPSELDAARDTAPAGELLTIDEQFERLDSIAALEEERATMMQRLEAKIEAKIGNIKGELLELVDEDFQEKRAKIN 1237
G GE+FFG+G PE AVVL VGYFVLGP EL KL K G LVGQ RD GLGT TNL +I++ +++ E A+G + E+ D++E+ED+ + A + G D ++ + D E+ L E S KFA Q+SG N++V+ E AP G G A +ANDVP L A + LTIDEQFERL+ +AALEEERA +MQRL+ EAK+ ++GELLELVD DF+ +RAK++
Sbjct: 6 GPGESFFGIGAPEAAVVLAVGYFVLGPTELYKLTKSIGTLVGQFRDFGLGTATNLQNIMEKELRTVEDKAAGRSTLDREWGNLEDAPAGDDDEYEDIXXXXXXXXXXXXXXXXXXXVSAPKPAKDFFGGADGGGDEYEDLDVEEF-LAETSASNNNKFAAQMSGDWNKQVLEQEAAVAP---GGGVAG-------------------------------------LANDVPQSLQAGGEPRE----LTIDEQFERLEKLAALEEERAALMQRLDDAFEAKMRAVRGELLELVDSDFRARRAKLS 264
BLAST of mRNA_P-littoralis_Contig625.14.1 vs. uniprot
Match: K0R3M1_THAOC (Sulfotransfer_1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R3M1_THAOC) HSP 1 Score: 62.8 bits (151), Expect = 2.050e-6 Identity = 49/149 (32.89%), Postives = 70/149 (46.98%), Query Frame = 2
Query: 182 VEAGGTSMTPPHTRHHRSFAGAPVIQGRTTAGTRRVGKNGRTGRRRSTSVQMVGFGETFFGVGGPEVAVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVTNLTSIVDDQIQNAEKIASGEKKPPDYFAPDEEFSMSDEEEFED 628
AG T P T H+R +Q RT R R+ +TS+ +G GVG PEVAV L+VGYFVLGP +L KLVK+ G V R +G + +++Q++ E + + + D F+ + D E F D
Sbjct: 38 TRAGRTVAHQPQTNHNRHH---DALQRRT---------GNRQARQSTTSLNFMGSDGGILGVGAPEVAVTLLVGYFVLGPSDLYKLVKEIGKFVQNFRTLGTEAAKSFEGTMENQLE-IEGLRKAQAELNDAFSFRRSINTDDTEAFSD 173
BLAST of mRNA_P-littoralis_Contig625.14.1 vs. uniprot
Match: A0A7S1CRH9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CRH9_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.870e-6 Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 2
Query: 320 STSVQMVGFGETFFGVGGPEVAVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVTNLTSIVDDQIQNAE 541
STS+ ++G GVG PE+A +LVVGYFVLGP EL KLVK+ G V R + S +++Q++ E
Sbjct: 19 STSLNVLGGDGGILGVGAPEIATILVVGYFVLGPSELYKLVKEIGKFVQNFRSLSTEASKQFESTMENQLELTE 92
BLAST of mRNA_P-littoralis_Contig625.14.1 vs. uniprot
Match: A0A7S2S1E5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S1E5_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.940e-6 Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 2
Query: 311 RRRSTSVQMVGFGETFFGVGGPEVAVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVTNLTSIVDDQIQNAEKIASGEKKPPDYFA 583
++ S V +G E FGVG PE+ VVL+VGYFVLGP EL LVK+ G V +R +G ++DQ+ E + +K+ D F+
Sbjct: 90 KKTSGMVMNLGGAEGIFGVGAPELVVVLIVGYFVLGPTELYSLVKEIGKFVQNIRSLGTDAAKTFEDSMEDQLDMKE-LREAQKELNDAFS 179
BLAST of mRNA_P-littoralis_Contig625.14.1 vs. uniprot
Match: B7FXN1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXN1_PHATC) HSP 1 Score: 59.7 bits (143), Expect = 1.200e-5 Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 2
Query: 320 STSVQM-VGFGETFFGVGGPEVAVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVTNLTSIVDDQIQNAEKIASGEKKPPDYFAPDEEFSMSDEEEF 622
STS+ M +G G+GGPE+ +L+VGYFVLGP +L KLVK+ G + +R +G T S +++Q+Q +++ +++ D F+ ++ D E F
Sbjct: 69 STSLNMFMGSDGGLLGIGGPELFTILLVGYFVLGPSDLYKLVKEIGKFIQNIRSLGTDLSTTFESNMENQLQ-LQELRKAQRELTDAFSFRRSINVDDSEAF 169
BLAST of mRNA_P-littoralis_Contig625.14.1 vs. uniprot
Match: A0A7R9ZB23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZB23_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.840e-5 Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 2
Query: 362 GVGGPEVAVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVTNLTSIVDDQIQNAE 541
GVG PEVAV+++VGYF+LGP +L KLVK+ G + +R +G+ + + ++DQ++ E
Sbjct: 44 GVGAPEVAVIVLVGYFILGPTDLYKLVKEIGKFIQNIRTLGVEASKSFENTMEDQLEIQE 103
BLAST of mRNA_P-littoralis_Contig625.14.1 vs. uniprot
Match: A0A7S2M850_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M850_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 3.740e-5 Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 2
Query: 320 STSVQMVGFGETFFGVGGPEVAVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVTNLTSIVDDQIQNAE 541
STS+ ++G GVG PE+A +LVVGYFVLGP EL KLVK+ G V R + S +++Q++ E
Sbjct: 76 STSLNVLGGDGGILGVGAPEIATILVVGYFVLGPSELYKLVKEIGKFVQNFRSLSTEASKQFESTMENQLELTE 149
BLAST of mRNA_P-littoralis_Contig625.14.1 vs. uniprot
Match: A0A7S0T9M5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T9M5_9RHOD) HSP 1 Score: 55.8 bits (133), Expect = 5.220e-5 Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 2
Query: 320 STSVQMVGFGETFFGVGGPEVAVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVTNLTSIV--DDQIQNAEKIASGEKKPPDYFAPDE 592
S S + G F GVG EVAV+LVVG+ VLGP EL+KL ++ G + G LR + +L SIV D + K+ P PDE
Sbjct: 41 SASSLRMSLGGGFLGVGSMEVAVILVVGWVVLGPKELIKLTREVGKIFGSLRGIATNARNSLQSIVEADSLTEEFNKVVQSVTDP---LTPDE 130 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig625.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig625.14.1 >prot_P-littoralis_Contig625.14.1 ID=prot_P-littoralis_Contig625.14.1|Name=mRNA_P-littoralis_Contig625.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=455bp MVSDRCLGAALFCACSASVVLGFVPSAGTGCAGAVRSRQRVEAGGTSMTPback to top mRNA from alignment at P-littoralis_Contig625:21116..25621+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig625.14.1 ID=mRNA_P-littoralis_Contig625.14.1|Name=mRNA_P-littoralis_Contig625.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4506bp|location=Sequence derived from alignment at P-littoralis_Contig625:21116..25621+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig625:21116..25621+ >mRNA_P-littoralis_Contig625.14.1 ID=mRNA_P-littoralis_Contig625.14.1|Name=mRNA_P-littoralis_Contig625.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1365bp|location=Sequence derived from alignment at P-littoralis_Contig625:21116..25621+ (Pylaiella littoralis U1_48)back to top |